Wall clock time and date at job start Tue Mar 31 2020 14:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36023 * 116.99978 * 2 1 4 4 C 1.38655 * 119.99313 * 359.72943 * 3 2 1 5 5 C 1.38129 * 120.03857 * 180.27110 * 4 3 2 6 6 C 1.38851 * 120.02026 * 359.97438 * 5 4 3 7 7 N 1.40108 * 120.00159 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99780 * 172.58427 * 7 6 5 9 9 O 1.21293 * 119.99843 * 5.03177 * 8 7 6 10 10 C 1.50695 * 119.99998 * 185.03799 * 8 7 6 11 11 S 1.81003 * 109.47361 * 184.85092 * 10 8 7 12 12 C 1.76201 * 100.00341 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99654 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00159 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46824 * 90.00340 * 16 14 12 18 18 H 1.48502 * 109.47155 * 209.99941 * 16 14 12 19 19 H 1.48495 * 109.47526 * 330.00084 * 16 14 12 20 20 C 1.46497 * 120.00287 * 352.58816 * 7 6 5 21 21 C 1.53005 * 109.47143 * 305.61090 * 20 7 6 22 22 C 1.53002 * 109.47143 * 65.60869 * 20 7 6 23 23 C 1.38830 * 119.98935 * 0.02562 * 6 5 4 24 24 C 1.38276 * 119.95776 * 359.97438 * 23 6 5 25 25 F 1.35099 * 120.00685 * 179.97438 * 24 23 6 26 26 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47008 * 300.00015 * 1 2 3 28 28 H 1.08998 * 109.47319 * 59.99593 * 1 2 3 29 29 H 1.07995 * 119.98243 * 0.24533 * 4 3 2 30 30 H 1.07998 * 119.98402 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46952 * 304.85060 * 10 8 7 32 32 H 1.09000 * 109.47873 * 64.85089 * 10 8 7 33 33 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.47433 * 185.61284 * 20 7 6 35 35 H 1.08994 * 109.46853 * 54.42552 * 21 20 7 36 36 H 1.08991 * 109.47219 * 174.42808 * 21 20 7 37 37 H 1.09003 * 109.46921 * 294.42929 * 21 20 7 38 38 H 1.08993 * 109.47282 * 66.04566 * 22 20 7 39 39 H 1.09001 * 109.46815 * 186.04358 * 22 20 7 40 40 H 1.08998 * 109.46887 * 306.04040 * 22 20 7 41 41 H 1.07996 * 120.01486 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2913 2.3747 -0.0057 5 6 1.9174 3.6060 -0.0113 6 6 3.3039 3.6802 -0.0108 7 7 3.9386 4.9293 -0.0160 8 6 5.2756 5.0064 0.1351 9 8 5.9398 3.9926 0.1840 10 6 5.9453 6.3520 0.2435 11 16 7.7410 6.1301 0.2931 12 6 8.2539 7.8113 0.4162 13 1 7.5168 8.6003 0.4399 14 6 9.6050 8.1215 0.4839 15 7 10.5033 7.1597 0.4555 16 14 10.1487 9.9037 0.6152 17 1 10.2430 10.2883 2.0465 18 1 11.4769 10.0649 -0.0292 19 1 9.1585 10.7749 -0.0673 20 6 3.1490 6.1515 -0.1856 21 6 2.3088 6.0432 -1.4598 22 6 2.2252 6.3333 1.0204 23 6 4.0611 2.5166 -0.0051 24 6 3.4337 1.2845 0.0005 25 9 4.1696 0.1515 0.0055 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2128 2.3178 -0.0061 30 1 1.3282 4.5111 -0.0162 31 1 5.6782 6.9613 -0.6200 32 1 5.6155 6.8497 1.1554 33 1 11.4476 7.3765 0.5025 34 1 3.8180 7.0085 -0.2634 35 1 1.7119 5.1320 -1.4250 36 1 1.6488 6.9073 -1.5343 37 1 2.9675 6.0132 -2.3278 38 1 2.8240 6.5177 1.9122 39 1 1.5627 7.1812 0.8460 40 1 1.6307 5.4308 1.1620 41 1 5.1396 2.5739 -0.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299560471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:37 Heat of formation + Delta-G solvation = -78.847663 kcal Electronic energy + Delta-G solvation = -25564.727306 eV Core-core repulsion = 21679.624384 eV Total energy + Delta-G solvation = -3885.102922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.88252 -42.26815 -40.58892 -38.77086 -37.27088 -34.59714 -33.32433 -31.97246 -31.50635 -29.55774 -28.10914 -28.02715 -27.62721 -24.13507 -23.60869 -23.13958 -21.09721 -19.72982 -19.19593 -18.70988 -18.39522 -17.32959 -17.22003 -16.89033 -16.84470 -16.62097 -16.14872 -16.04208 -15.96927 -15.20800 -15.08781 -14.67747 -14.60806 -14.51962 -14.04875 -13.97993 -13.90450 -13.54787 -13.24182 -13.11476 -12.90107 -12.89703 -12.75208 -12.62391 -12.43784 -12.32807 -12.06237 -11.76193 -11.36872 -11.14911 -10.77513 -10.52104 -10.29066 -9.94211 -8.73866 -8.64057 -8.35620 -6.14594 0.01509 0.12850 1.15533 1.39911 1.41845 1.42974 1.54575 1.83137 2.25102 2.26551 2.53898 2.99150 3.06386 3.23994 3.48883 3.72645 3.77676 3.97924 4.06881 4.07398 4.15431 4.21779 4.31185 4.39987 4.41681 4.45086 4.68369 4.73575 4.78384 4.80571 4.85640 4.93376 4.96754 5.03672 5.11912 5.24461 5.36459 5.40172 5.41290 5.82646 6.14842 6.19199 6.33253 6.93451 7.05815 8.73574 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002976 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.262086 B = 9404.842466 C =10494.849386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.338 6.338 3 C 0.065 3.935 4 C -0.143 4.143 5 C -0.124 4.124 6 C 0.145 3.855 7 N -0.537 5.537 8 C 0.528 3.472 9 O -0.533 6.533 10 C -0.122 4.122 11 S -0.149 6.149 12 C -0.543 4.543 13 H 0.086 0.914 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.999 3.001 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.255 1.255 20 C 0.108 3.892 21 C -0.176 4.176 22 C -0.176 4.176 23 C -0.196 4.196 24 C 0.059 3.941 25 F -0.150 7.150 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.185 0.815 30 H 0.189 0.811 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.271 0.729 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.827 -2.865 -1.694 29.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.019 3.981 4 C -0.162 4.162 5 C -0.144 4.144 6 C 0.050 3.950 7 N -0.260 5.260 8 C 0.318 3.682 9 O -0.411 6.411 10 C -0.273 4.273 11 S 0.078 5.922 12 C -0.691 4.691 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.549 5.549 16 Si 0.821 3.179 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.179 1.179 20 C 0.007 3.993 21 C -0.233 4.233 22 C -0.233 4.233 23 C -0.216 4.216 24 C 0.039 3.961 25 F -0.129 7.129 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.202 0.798 30 H 0.205 0.795 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -27.541 -4.541 -1.710 27.965 hybrid contribution 0.580 1.419 0.161 1.542 sum -26.961 -3.122 -1.549 27.185 Atomic orbital electron populations 1.23463 0.75565 1.05865 1.03021 1.86130 1.24271 1.25757 1.89073 1.19098 0.89863 0.87028 1.02159 1.21338 1.01796 0.89231 1.03804 1.21568 0.90908 1.00120 1.01795 1.17685 0.92539 0.83637 1.01172 1.45771 1.05793 1.06570 1.67912 1.20508 0.81837 0.90833 0.74976 1.90370 1.64492 1.36848 1.49360 1.23396 1.00198 0.96781 1.06922 1.85677 0.96875 1.13071 1.96595 1.23179 0.95448 0.91922 1.58531 0.89551 1.26144 0.95537 1.03750 0.93786 1.70187 1.01949 1.34809 1.47923 0.84943 0.77787 0.76395 0.78805 1.19363 1.20508 1.17870 1.21869 0.94422 0.84734 0.98264 1.22484 1.00537 1.05325 0.94976 1.22486 0.99855 1.04728 0.96216 1.22447 1.04740 0.90019 1.04431 1.17195 0.87034 0.82306 1.09583 1.91428 1.77502 1.49487 1.94500 0.86614 0.90790 0.90701 0.79782 0.79467 0.86644 0.86773 0.92015 0.87607 0.89958 0.87488 0.93203 0.92959 0.87556 0.90154 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -7.70 10.36 -93.81 -0.97 -8.67 16 3 C 0.07 1.62 6.69 22.53 0.15 1.77 16 4 C -0.14 -2.35 9.03 22.34 0.20 -2.15 16 5 C -0.12 -2.21 6.65 22.39 0.15 -2.06 16 6 C 0.14 3.98 6.08 38.11 0.23 4.21 16 7 N -0.54 -14.85 2.63 -608.77 -1.60 -16.44 16 8 C 0.53 19.95 7.63 87.66 0.67 20.62 16 9 O -0.53 -24.78 12.28 -3.07 -0.04 -24.82 16 10 C -0.12 -4.73 4.65 71.23 0.33 -4.40 16 11 S -0.15 -8.19 20.58 -56.49 -1.16 -9.35 16 12 C -0.54 -30.33 9.50 67.95 0.65 -29.68 16 13 H 0.09 4.42 7.80 -2.91 -0.02 4.39 16 14 C 0.01 0.71 5.49 84.86 0.47 1.17 16 15 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 16 Si 1.00 42.90 29.55 68.60 2.03 44.92 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 20 C 0.11 1.91 3.04 44.99 0.14 2.05 16 21 C -0.18 -2.25 8.93 71.98 0.64 -1.60 16 22 C -0.18 -2.18 9.05 71.98 0.65 -1.53 16 23 C -0.20 -6.84 9.02 22.42 0.20 -6.64 16 24 C 0.06 1.94 7.30 22.44 0.16 2.11 16 25 F -0.15 -5.57 17.11 44.97 0.77 -4.80 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 28 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 29 H 0.19 1.32 6.29 -2.91 -0.02 1.30 16 30 H 0.19 1.94 3.57 -2.91 -0.01 1.93 16 31 H 0.12 3.92 7.19 -2.39 -0.02 3.90 16 32 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 33 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 34 H 0.11 1.92 5.73 -2.39 -0.01 1.91 16 35 H 0.08 0.94 4.59 -2.39 -0.01 0.93 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.88 4.82 -2.39 -0.01 0.86 16 41 H 0.17 7.10 4.54 -61.44 -0.28 6.82 16 Total: -1.00 -81.06 346.94 5.88 -75.18 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.81 Total: 14.40 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.75 Total: -14.88 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.31 Total: -72.00 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.01 Total: -33.49 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.77 Total: -4.80 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -81.06 5.88 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299560471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.667 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds