Wall clock time and date at job start Tue Mar 31 2020 15:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36001 * 116.99801 * 2 1 4 4 C 1.38084 * 119.98802 * 0.25710 * 3 2 1 5 5 C 1.39992 * 119.81905 * 180.26820 * 4 3 2 6 6 C 1.46950 * 120.09558 * 179.74493 * 5 4 3 7 7 C 1.35138 * 119.99885 * 179.72875 * 6 5 4 8 8 C 1.41806 * 119.99979 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00074 * 179.72353 * 8 7 6 11 11 C 1.46508 * 119.99902 * 0.27228 * 10 8 7 12 12 C 1.36747 * 120.00488 * 180.27651 * 10 8 7 13 13 H 1.08001 * 119.99611 * 23.67978 * 12 10 8 14 14 C 1.39091 * 120.00562 * 203.68432 * 12 10 8 15 15 N 1.31340 * 119.99792 * 15.14462 * 14 12 10 16 16 Si 1.86800 * 120.00074 * 195.15314 * 14 12 10 17 17 H 1.48493 * 109.47226 * 89.99543 * 16 14 12 18 18 H 1.48498 * 109.46923 * 209.99765 * 16 14 12 19 19 H 1.48499 * 109.47094 * 329.99531 * 16 14 12 20 20 C 1.39982 * 119.80585 * 359.47487 * 5 4 3 21 21 C 1.37741 * 119.97349 * 0.24993 * 20 5 4 22 22 C 1.38862 * 120.17499 * 0.02562 * 21 20 5 23 23 O 1.35834 * 119.90194 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99903 * 359.97438 * 23 22 21 25 25 F 1.39898 * 109.46930 * 300.00306 * 24 23 22 26 26 F 1.39900 * 109.46637 * 59.99924 * 24 23 22 27 27 H 1.09011 * 109.46832 * 59.99904 * 1 2 3 28 28 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47299 * 299.99914 * 1 2 3 30 30 H 1.07999 * 120.08842 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.99825 * 359.73112 * 6 5 4 32 32 H 1.08003 * 120.00350 * 359.97438 * 7 6 5 33 33 H 1.08999 * 109.46567 * 84.82976 * 11 10 8 34 34 H 1.09000 * 109.46913 * 204.82351 * 11 10 8 35 35 H 1.08990 * 109.47171 * 324.82625 * 11 10 8 36 36 H 0.96998 * 120.00053 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.01517 * 180.22509 * 20 5 4 38 38 H 1.07995 * 119.91146 * 179.97438 * 21 20 5 39 39 H 1.08996 * 109.47187 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2941 2.3697 0.0054 5 6 1.9333 3.6152 -0.0003 6 6 1.1385 4.8512 -0.0003 7 6 1.7576 6.0525 -0.0003 8 6 0.9907 7.2453 0.0002 9 8 -0.2257 7.1871 0.0012 10 7 1.6080 8.4433 0.0059 11 6 3.0714 8.5133 0.0055 12 6 0.8686 9.5936 0.0122 13 1 -0.1437 9.5827 0.3884 14 6 1.4200 10.7776 -0.4661 15 7 2.5168 10.7466 -1.1880 16 14 0.6009 12.4117 -0.0813 17 1 1.1535 12.9564 1.1848 18 1 0.8611 13.3683 -1.1870 19 1 -0.8630 12.2096 0.0640 20 6 3.3316 3.6796 -0.0003 21 6 4.0740 2.5194 0.0001 22 6 3.4390 1.2845 0.0000 23 8 4.1766 0.1438 0.0009 24 6 5.5981 0.2904 0.0014 25 9 5.9947 0.9937 -1.1410 26 9 5.9937 0.9949 1.1435 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2155 2.3146 0.0091 31 1 0.0598 4.7996 -0.0003 32 1 2.8364 6.1041 0.0001 33 1 3.4381 8.4432 -1.0186 34 1 3.3900 9.4601 0.4415 35 1 3.4748 7.6887 0.5931 36 1 2.9016 11.5723 -1.5212 37 1 3.8282 4.6387 -0.0010 38 1 5.1527 2.5703 -0.0003 39 1 6.0649 -0.6945 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299594509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:49 Heat of formation + Delta-G solvation = -154.425897 kcal Electronic energy + Delta-G solvation = -27051.665360 eV Core-core repulsion = 22597.071944 eV Total energy + Delta-G solvation = -4454.593416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.57284 -47.55902 -40.57981 -38.72366 -38.50951 -37.25774 -34.85852 -32.97966 -31.75682 -30.51039 -29.49616 -27.33600 -26.65689 -26.13030 -24.85388 -23.31644 -22.54267 -20.93254 -19.36096 -18.47327 -18.40594 -18.13085 -17.08115 -16.94971 -16.55533 -16.22812 -15.95584 -15.69628 -14.94748 -14.63748 -14.35019 -14.26503 -14.08054 -14.06405 -13.94375 -13.85933 -13.81441 -13.12380 -12.84187 -12.58273 -12.38632 -12.08314 -11.96736 -11.76589 -11.50468 -11.46571 -11.35499 -11.29794 -10.98701 -10.75248 -10.41436 -10.37211 -9.56424 -9.12368 -8.60036 -8.44741 -7.79502 -7.62837 -6.49527 -3.92302 0.71202 1.28222 2.29839 2.36551 3.07294 3.13131 3.18916 3.23222 3.24593 3.72307 4.04651 4.05014 4.39710 4.43716 4.62490 4.73523 4.81721 4.93191 5.02630 5.09776 5.15621 5.19419 5.23394 5.34848 5.46696 5.63387 5.91887 6.06077 6.20296 6.27577 6.34826 6.44175 6.63939 6.73534 6.89692 6.98972 7.08803 7.28848 7.42336 8.05886 8.39529 9.09821 9.30297 9.95031 10.54200 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.002606 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.891730 B =10742.922786 C =12017.998200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.117 3.883 4 C -0.170 4.170 5 C -0.022 4.022 6 C -0.092 4.092 7 C -0.147 4.147 8 C 0.454 3.546 9 O -0.602 6.602 10 N -0.426 5.426 11 C 0.104 3.896 12 C -0.297 4.297 13 H 0.104 0.896 14 C 0.029 3.971 15 N -0.866 5.866 16 Si 0.930 3.070 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.114 4.114 21 C -0.148 4.148 22 C 0.062 3.938 23 O -0.311 6.311 24 C 0.410 3.590 25 F -0.200 7.200 26 F -0.200 7.200 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.272 0.728 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.849 -20.862 2.265 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.072 3.928 4 C -0.189 4.189 5 C -0.022 4.022 6 C -0.114 4.114 7 C -0.168 4.168 8 C 0.247 3.753 9 O -0.491 6.491 10 N -0.142 5.142 11 C -0.040 4.040 12 C -0.426 4.426 13 H 0.121 0.879 14 C -0.176 4.176 15 N -0.504 5.504 16 Si 0.756 3.244 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.132 4.132 21 C -0.167 4.167 22 C 0.019 3.981 23 O -0.229 6.229 24 C 0.319 3.681 25 F -0.181 7.181 26 F -0.182 7.182 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.454 -21.001 2.164 22.077 hybrid contribution -0.021 1.309 -0.001 1.309 sum 6.433 -19.692 2.162 20.829 Atomic orbital electron populations 1.23099 0.78264 1.03928 1.01725 1.86130 1.21305 1.25816 1.89126 1.17977 0.88500 0.85240 1.01104 1.21243 1.00145 0.90479 1.07023 1.18939 0.92797 0.92782 0.97693 1.22003 0.99619 0.89816 0.99920 1.22444 1.00155 0.93937 1.00313 1.16823 0.88146 0.83812 0.86522 1.90643 1.13838 1.87050 1.57522 1.43686 1.05787 1.05218 1.59499 1.21597 0.81069 1.00463 1.00842 1.19802 0.99644 0.84761 1.38354 0.87881 1.25470 0.96775 1.00386 0.94948 1.69977 1.20817 1.28908 1.30662 0.85862 0.79930 0.80546 0.78097 1.20124 1.20761 1.19095 1.21183 0.92957 0.98208 1.00886 1.21256 1.00698 0.90827 1.03898 1.18113 0.88039 0.85060 1.06937 1.86630 1.16566 1.30629 1.89041 1.23356 0.80538 0.92315 0.71862 1.93102 1.90621 1.82329 1.52087 1.93100 1.90653 1.82291 1.52132 0.92406 0.88218 0.92416 0.84064 0.85009 0.86439 0.92681 0.90513 0.95004 0.91800 0.84583 0.84285 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.85 10.27 -34.42 -0.35 -4.21 16 3 C 0.12 1.60 6.69 -39.19 -0.26 1.33 16 4 C -0.17 -2.30 8.78 -38.98 -0.34 -2.64 16 5 C -0.02 -0.33 5.87 -105.06 -0.62 -0.94 16 6 C -0.09 -1.63 9.41 -37.16 -0.35 -1.98 16 7 C -0.15 -2.93 8.45 -39.32 -0.33 -3.26 16 8 C 0.45 11.44 7.40 -14.90 -0.11 11.33 16 9 O -0.60 -17.18 15.81 5.12 0.08 -17.10 16 10 N -0.43 -11.04 3.00 -125.41 -0.38 -11.41 16 11 C 0.10 2.29 8.27 59.85 0.50 2.79 16 12 C -0.30 -8.25 9.23 -15.04 -0.14 -8.39 16 13 H 0.10 2.99 7.44 -52.49 -0.39 2.60 16 14 C 0.03 0.76 4.98 -17.45 -0.09 0.68 16 15 N -0.87 -22.60 10.93 55.50 0.61 -21.99 16 16 Si 0.93 20.23 29.58 -169.99 -5.03 15.20 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.11 -1.62 9.40 -39.11 -0.37 -1.99 16 21 C -0.15 -1.98 8.23 -39.53 -0.33 -2.30 16 22 C 0.06 0.84 6.51 -38.90 -0.25 0.59 16 23 O -0.31 -3.67 10.20 -33.90 -0.35 -4.01 16 24 C 0.41 3.40 5.98 101.05 0.60 4.00 16 25 F -0.20 -1.99 15.57 2.25 0.04 -1.95 16 26 F -0.20 -1.97 15.57 2.25 0.04 -1.94 16 27 H 0.06 0.45 7.67 -51.92 -0.40 0.05 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 30 H 0.14 1.62 6.28 -52.49 -0.33 1.29 16 31 H 0.13 2.43 7.45 -52.49 -0.39 2.04 16 32 H 0.12 2.02 4.21 -52.48 -0.22 1.80 16 33 H 0.05 1.23 7.88 -51.93 -0.41 0.82 16 34 H 0.08 1.76 6.75 -51.93 -0.35 1.41 16 35 H 0.03 0.58 6.38 -51.93 -0.33 0.25 16 36 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.14 1.79 6.15 -52.48 -0.32 1.47 16 38 H 0.14 1.68 5.06 -52.49 -0.27 1.41 16 39 H 0.18 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -33.50 338.79 -5.12 -38.62 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.79 Total: 3.27 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.09 Total: 0.42 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.23 Total: -33.41 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.62 Total: -25.32 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.50 -5.12 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299594509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.807 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds