Wall clock time and date at job start Tue Mar 31 2020 15:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36001 * 116.99801 * 2 1 4 4 C 1.38084 * 119.98802 * 0.25710 * 3 2 1 5 5 C 1.39992 * 119.81905 * 180.26820 * 4 3 2 6 6 C 1.46950 * 120.09558 * 179.74493 * 5 4 3 7 7 C 1.35138 * 119.99885 * 179.72875 * 6 5 4 8 8 C 1.41806 * 119.99979 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00074 * 179.72353 * 8 7 6 11 11 C 1.46508 * 119.99902 * 0.27228 * 10 8 7 12 12 C 1.36747 * 120.00488 * 180.27651 * 10 8 7 13 13 H 1.08001 * 119.99611 * 23.67978 * 12 10 8 14 14 C 1.39091 * 120.00562 * 203.68432 * 12 10 8 15 15 N 1.31340 * 119.99792 * 15.14462 * 14 12 10 16 16 Si 1.86800 * 120.00074 * 195.15314 * 14 12 10 17 17 H 1.48493 * 109.47226 * 89.99543 * 16 14 12 18 18 H 1.48498 * 109.46923 * 209.99765 * 16 14 12 19 19 H 1.48499 * 109.47094 * 329.99531 * 16 14 12 20 20 C 1.39982 * 119.80585 * 359.47487 * 5 4 3 21 21 C 1.37741 * 119.97349 * 0.24993 * 20 5 4 22 22 C 1.38862 * 120.17499 * 0.02562 * 21 20 5 23 23 O 1.35834 * 119.90194 * 180.02562 * 22 21 20 24 24 C 1.42902 * 116.99903 * 359.97438 * 23 22 21 25 25 F 1.39898 * 109.46930 * 300.00306 * 24 23 22 26 26 F 1.39900 * 109.46637 * 59.99924 * 24 23 22 27 27 H 1.09011 * 109.46832 * 59.99904 * 1 2 3 28 28 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47299 * 299.99914 * 1 2 3 30 30 H 1.07999 * 120.08842 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.99825 * 359.73112 * 6 5 4 32 32 H 1.08003 * 120.00350 * 359.97438 * 7 6 5 33 33 H 1.08999 * 109.46567 * 84.82976 * 11 10 8 34 34 H 1.09000 * 109.46913 * 204.82351 * 11 10 8 35 35 H 1.08990 * 109.47171 * 324.82625 * 11 10 8 36 36 H 0.96998 * 120.00053 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.01517 * 180.22509 * 20 5 4 38 38 H 1.07995 * 119.91146 * 179.97438 * 21 20 5 39 39 H 1.08996 * 109.47187 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2941 2.3697 0.0054 5 6 1.9333 3.6152 -0.0003 6 6 1.1385 4.8512 -0.0003 7 6 1.7576 6.0525 -0.0003 8 6 0.9907 7.2453 0.0002 9 8 -0.2257 7.1871 0.0012 10 7 1.6080 8.4433 0.0059 11 6 3.0714 8.5133 0.0055 12 6 0.8686 9.5936 0.0122 13 1 -0.1437 9.5827 0.3884 14 6 1.4200 10.7776 -0.4661 15 7 2.5168 10.7466 -1.1880 16 14 0.6009 12.4117 -0.0813 17 1 1.1535 12.9564 1.1848 18 1 0.8611 13.3683 -1.1870 19 1 -0.8630 12.2096 0.0640 20 6 3.3316 3.6796 -0.0003 21 6 4.0740 2.5194 0.0001 22 6 3.4390 1.2845 0.0000 23 8 4.1766 0.1438 0.0009 24 6 5.5981 0.2904 0.0014 25 9 5.9947 0.9937 -1.1410 26 9 5.9937 0.9949 1.1435 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2155 2.3146 0.0091 31 1 0.0598 4.7996 -0.0003 32 1 2.8364 6.1041 0.0001 33 1 3.4381 8.4432 -1.0186 34 1 3.3900 9.4601 0.4415 35 1 3.4748 7.6887 0.5931 36 1 2.9016 11.5723 -1.5212 37 1 3.8282 4.6387 -0.0010 38 1 5.1527 2.5703 -0.0003 39 1 6.0649 -0.6945 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299594509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:48 Heat of formation + Delta-G solvation = -175.651937 kcal Electronic energy + Delta-G solvation = -27052.585790 eV Core-core repulsion = 22597.071944 eV Total energy + Delta-G solvation = -4455.513846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.28487 -48.27898 -41.58875 -40.56954 -39.40064 -38.38219 -36.78271 -34.43884 -33.66702 -31.58812 -30.65928 -28.47195 -28.02218 -27.29189 -26.43786 -24.69399 -23.53744 -22.31388 -20.24354 -19.92238 -19.36823 -18.93311 -18.86046 -18.29873 -17.86786 -17.35097 -16.81998 -16.73783 -16.64061 -16.03633 -15.82665 -15.56639 -15.43387 -15.06570 -14.86262 -14.85269 -14.60620 -14.53821 -13.94159 -13.82586 -13.71765 -13.44163 -13.32203 -13.20886 -12.98194 -12.90219 -12.62621 -12.47479 -12.29035 -12.24372 -12.13633 -11.99070 -11.06418 -10.84348 -10.46517 -9.77460 -9.67726 -8.84747 -8.43171 -5.99686 -0.54837 0.21915 0.92058 1.40440 1.42193 1.53192 1.59817 2.21206 2.25689 2.41029 2.57680 2.72991 3.09540 3.16844 3.49134 3.64088 3.68164 3.72569 3.85552 4.06381 4.12499 4.20230 4.31701 4.40816 4.44361 4.48177 4.65310 4.75465 4.92148 4.94239 5.02449 5.08744 5.27694 5.36875 5.37660 5.43281 5.61080 5.68050 6.07553 6.33760 6.45199 7.11571 7.38887 8.00390 8.59881 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.002606 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.891730 B =10742.922786 C =12017.998200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.106 3.894 4 C -0.158 4.158 5 C -0.051 4.051 6 C -0.044 4.044 7 C -0.184 4.184 8 C 0.451 3.549 9 O -0.649 6.649 10 N -0.447 5.447 11 C 0.114 3.886 12 C -0.345 4.345 13 H 0.073 0.927 14 C -0.001 4.001 15 N -0.885 5.885 16 Si 0.993 3.007 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.275 1.275 20 C -0.108 4.108 21 C -0.155 4.155 22 C 0.068 3.932 23 O -0.319 6.319 24 C 0.403 3.597 25 F -0.209 7.209 26 F -0.209 7.209 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.064 0.936 30 H 0.159 0.841 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.278 0.722 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 -23.074 2.453 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.060 3.940 4 C -0.177 4.177 5 C -0.051 4.051 6 C -0.066 4.066 7 C -0.204 4.204 8 C 0.245 3.755 9 O -0.540 6.540 10 N -0.162 5.162 11 C -0.029 4.029 12 C -0.474 4.474 13 H 0.091 0.909 14 C -0.204 4.204 15 N -0.523 5.523 16 Si 0.816 3.184 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.200 1.200 20 C -0.126 4.126 21 C -0.174 4.174 22 C 0.024 3.976 23 O -0.237 6.237 24 C 0.315 3.685 25 F -0.191 7.191 26 F -0.191 7.191 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.177 0.823 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.809 -23.236 2.351 24.626 hybrid contribution -0.411 1.550 -0.067 1.605 sum 7.398 -21.687 2.284 23.027 Atomic orbital electron populations 1.23415 0.76260 1.05926 1.02344 1.86127 1.23375 1.25080 1.88928 1.18101 0.88877 0.85725 1.01273 1.21426 1.01186 0.89906 1.05136 1.18798 0.93161 0.92071 1.01109 1.22134 0.99402 0.90429 0.94591 1.22188 1.01060 0.92144 1.05005 1.17619 0.87984 0.85182 0.84668 1.90586 1.16101 1.88016 1.59346 1.43855 1.07064 1.04949 1.60345 1.21559 0.79178 1.01269 1.00875 1.19689 0.99464 0.86730 1.41469 0.90859 1.26200 0.97298 1.02852 0.94043 1.70033 1.21522 1.29950 1.30754 0.84938 0.78357 0.76503 0.78596 1.18691 1.19584 1.19999 1.21343 0.92615 0.99077 0.99598 1.21391 1.01320 0.90517 1.04155 1.18399 0.88622 0.85778 1.04790 1.86647 1.18467 1.29962 1.88608 1.24326 0.79000 0.94295 0.70927 1.93082 1.90503 1.82858 1.52693 1.93081 1.90525 1.82808 1.52686 0.91805 0.85698 0.91713 0.82331 0.86012 0.83725 0.93486 0.91945 0.91131 0.91226 0.83650 0.83083 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.18 10.27 -79.53 -0.82 -8.00 16 3 C 0.11 2.65 6.69 22.52 0.15 2.80 16 4 C -0.16 -3.95 8.78 22.66 0.20 -3.75 16 5 C -0.05 -1.46 5.87 -20.15 -0.12 -1.58 16 6 C -0.04 -1.53 9.41 23.84 0.22 -1.31 16 7 C -0.18 -7.28 8.45 22.44 0.19 -7.09 16 8 C 0.45 23.51 7.40 85.12 0.63 24.14 16 9 O -0.65 -38.77 15.81 -4.60 -0.07 -38.84 16 10 N -0.45 -23.95 3.00 -668.87 -2.01 -25.96 16 11 C 0.11 5.08 8.27 127.77 1.06 6.14 16 12 C -0.35 -20.07 9.23 84.13 0.78 -19.30 16 13 H 0.07 4.56 7.44 -2.91 -0.02 4.54 16 14 C 0.00 -0.03 4.98 84.97 0.42 0.39 16 15 N -0.89 -46.87 10.93 21.69 0.24 -46.64 16 16 Si 0.99 42.25 29.58 68.60 2.03 44.28 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.11 -2.86 9.40 22.58 0.21 -2.64 16 21 C -0.16 -3.79 8.23 22.30 0.18 -3.61 16 22 C 0.07 1.69 6.51 22.71 0.15 1.84 16 23 O -0.32 -6.61 10.20 -77.66 -0.79 -7.40 16 24 C 0.40 5.37 5.98 113.37 0.68 6.05 16 25 F -0.21 -3.61 15.57 44.97 0.70 -2.91 16 26 F -0.21 -3.56 15.57 44.97 0.70 -2.86 16 27 H 0.06 0.83 7.67 -2.38 -0.02 0.81 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 30 H 0.16 3.29 6.28 -2.91 -0.02 3.27 16 31 H 0.12 4.50 7.45 -2.91 -0.02 4.47 16 32 H 0.15 4.81 4.21 -2.91 -0.01 4.80 16 33 H 0.05 2.13 7.88 -2.39 -0.02 2.11 16 34 H 0.06 2.91 6.75 -2.39 -0.02 2.90 16 35 H 0.07 2.51 6.38 -2.39 -0.02 2.50 16 36 H 0.28 13.63 8.31 -92.71 -0.77 12.85 16 37 H 0.15 3.50 6.15 -2.91 -0.02 3.49 16 38 H 0.15 3.28 5.06 -2.91 -0.01 3.27 16 39 H 0.24 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -75.94 338.79 6.96 -68.98 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.12 Total: 15.95 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.87 Total: 3.40 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.77 Total: -72.59 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -1.68 Total: -54.25 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.40 Total: -5.77 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.94 6.96 -68.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299594509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.672 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds