Wall clock time and date at job start Tue Mar 31 2020 14:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 C 1.50704 * 109.46940 * 240.00269 * 2 1 3 5 5 H 1.08007 * 119.99799 * 240.00355 * 4 2 1 6 6 C 1.37875 * 119.99993 * 59.99826 * 4 2 1 7 7 N 1.31507 * 120.00027 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47173 * 90.00362 * 8 6 4 10 10 H 1.48505 * 109.47146 * 210.00326 * 8 6 4 11 11 H 1.48495 * 109.47069 * 330.00013 * 8 6 4 12 12 C 1.52998 * 109.47169 * 120.00295 * 2 1 3 13 13 S 1.81400 * 109.46944 * 299.99944 * 12 2 1 14 14 O 1.42093 * 110.54510 * 68.37785 * 13 12 2 15 15 O 1.42101 * 110.54078 * 291.62189 * 13 12 2 16 16 N 1.65610 * 104.44821 * 179.97438 * 13 12 2 17 17 C 1.50106 * 120.63390 * 270.02144 * 16 13 12 18 18 C 1.46912 * 106.78112 * 111.32301 * 17 16 13 19 19 O 1.42383 * 113.79012 * 56.80082 * 18 17 16 20 20 C 1.39648 * 108.63633 * 267.45808 * 19 18 17 21 21 C 1.55049 * 110.65893 * 101.01392 * 20 19 18 22 22 F 1.39900 * 109.68063 * 202.51118 * 21 20 19 23 23 F 1.39894 * 109.38790 * 82.18916 * 21 20 19 24 24 C 1.43423 * 120.63329 * 89.99849 * 16 13 12 25 25 H 1.08999 * 109.46674 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.46845 * 59.99540 * 1 2 3 27 27 H 1.08990 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47115 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47068 * 299.99986 * 3 2 1 30 30 H 1.09000 * 109.46655 * 59.99937 * 3 2 1 31 31 H 0.97007 * 120.00014 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47299 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47213 * 59.99776 * 12 2 1 34 34 H 1.09005 * 109.99131 * 230.64074 * 17 16 13 35 35 H 1.09005 * 109.99347 * 351.90908 * 17 16 13 36 36 H 1.09000 * 108.62456 * 177.91700 * 18 17 16 37 37 H 1.09004 * 108.62172 * 295.82708 * 18 17 16 38 38 H 1.09003 * 109.25450 * 221.45146 * 20 19 18 39 39 H 1.08999 * 109.25345 * 340.88981 * 20 19 18 40 40 H 1.09002 * 108.12928 * 31.13755 * 24 16 13 41 41 H 1.09005 * 108.12310 * 147.83339 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0281 -0.0184 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0530 -0.7410 3.9936 17 6 1.2837 -1.8906 4.5764 18 6 2.0205 -3.1134 4.2296 19 8 3.3722 -3.1158 4.6771 20 6 4.1820 -2.6184 3.6539 21 6 4.5563 -1.1381 3.9232 22 9 4.9030 -0.5135 2.7203 23 9 5.6375 -1.0863 4.8094 24 6 3.3335 -0.4149 4.5514 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1619 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7490 1.2492 34 1 1.2224 -1.7871 5.6598 35 1 0.2817 -1.9237 4.1484 36 1 1.5062 -3.9669 4.6713 37 1 2.0148 -3.2277 3.1456 38 1 5.0919 -3.2155 3.5932 39 1 3.6458 -2.6840 2.7072 40 1 3.4849 0.6595 4.4478 41 1 3.3098 -0.6507 5.6153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331994353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:45 Heat of formation + Delta-G solvation = -199.035158 kcal Electronic energy + Delta-G solvation = -29148.723733 eV Core-core repulsion = 24827.639866 eV Total energy + Delta-G solvation = -4321.083867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.98844 -47.06554 -39.94929 -36.81705 -36.37998 -35.99942 -35.38059 -32.14834 -31.72398 -28.41435 -27.10083 -26.46731 -25.77795 -25.27523 -22.81268 -21.90304 -19.53097 -18.97547 -17.96798 -17.64094 -17.53356 -17.16515 -16.55138 -16.01279 -15.59209 -15.41750 -15.26126 -14.77963 -14.58979 -14.18394 -13.97062 -13.48868 -13.41325 -13.30222 -13.10327 -12.99323 -12.58353 -12.46353 -12.35055 -12.17965 -11.80008 -11.76308 -11.40554 -11.24610 -11.13006 -11.10241 -10.99423 -10.77007 -10.45160 -10.34594 -10.16528 -10.02440 -9.71901 -9.70905 -9.25092 -8.73778 -8.44706 -6.07966 -4.20141 0.59354 2.67983 3.22633 3.28429 3.30431 3.32310 3.55882 3.79917 4.18385 4.20952 4.28895 4.34214 4.47890 4.58676 4.84018 4.90881 4.99406 5.14776 5.17575 5.22441 5.36272 5.44084 5.50985 5.53975 5.60846 5.76849 6.28037 6.31512 6.58176 6.63171 6.73105 6.83421 6.97310 7.25708 7.44538 7.63110 7.92672 8.03602 8.27246 8.77968 9.45528 10.93484 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.005158 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543037 B = 5427.113460 C = 5930.078421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.584 4.584 13 S 2.583 3.417 14 O -0.955 6.955 15 O -0.952 6.952 16 N -1.001 6.001 17 C 0.087 3.913 18 C 0.020 3.980 19 O -0.334 6.334 20 C 0.018 3.982 21 C 0.232 3.768 22 F -0.186 7.186 23 F -0.187 7.187 24 C 0.085 3.915 25 H 0.026 0.974 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -7.613 14.091 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.222 4.222 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.718 4.718 13 S 2.682 3.318 14 O -0.945 6.945 15 O -0.942 6.942 16 N -0.834 5.834 17 C -0.037 4.037 18 C -0.058 4.058 19 O -0.250 6.250 20 C -0.062 4.062 21 C 0.192 3.808 22 F -0.167 7.167 23 F -0.168 7.168 24 C -0.045 4.045 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.515 -6.759 14.303 16.019 hybrid contribution 0.946 -0.841 -1.390 1.880 sum 3.461 -7.600 12.913 15.379 Atomic orbital electron populations 1.22288 0.96901 1.00613 1.02364 1.17922 0.92739 0.92267 0.88807 1.22276 0.99951 0.97673 1.02260 1.20908 1.31809 1.12129 0.89282 0.92295 1.24928 0.94857 0.94951 0.98932 1.69793 1.36271 1.22477 1.23562 0.86536 0.79193 0.79394 0.82530 1.20637 1.21072 1.19923 1.30672 1.11916 1.12462 1.16779 1.06175 0.74838 0.75340 0.75423 1.93539 1.28962 1.86440 1.85564 1.93549 1.77949 1.37352 1.85361 1.58111 1.25834 1.47921 1.51577 1.21760 0.96379 0.84124 1.01408 1.22221 0.83804 0.98999 1.00772 1.87766 1.16890 1.82181 1.38204 1.23613 0.98698 0.91010 0.92857 1.23440 0.85354 0.95893 0.76075 1.93073 1.93266 1.84016 1.46356 1.93004 1.57574 1.97318 1.68951 1.21614 0.81467 1.01401 1.00030 0.95504 0.88514 0.94433 0.94260 0.88555 0.95532 0.92675 0.85790 0.86593 0.88994 0.86255 0.87851 0.91305 0.87571 0.88863 0.87125 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 7.78 37.16 0.29 -3.62 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 4 C -0.50 -12.87 8.01 -34.44 -0.28 -13.15 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 C -0.58 -11.04 5.12 37.16 0.19 -10.85 16 13 S 2.58 46.62 4.49 -107.50 -0.48 46.14 16 14 O -0.95 -18.73 14.26 -57.54 -0.82 -19.55 16 15 O -0.95 -19.74 14.18 -57.54 -0.82 -20.56 16 16 N -1.00 -13.32 2.83 -115.56 -0.33 -13.65 16 17 C 0.09 0.85 6.34 -4.94 -0.03 0.82 16 18 C 0.02 0.17 6.02 34.24 0.21 0.37 16 19 O -0.33 -3.39 10.24 -31.96 -0.33 -3.72 16 20 C 0.02 0.19 5.88 38.24 0.22 0.41 16 21 C 0.23 2.99 2.56 -24.41 -0.06 2.93 16 22 F -0.19 -2.87 15.65 2.25 0.04 -2.84 16 23 F -0.19 -2.46 17.10 2.25 0.04 -2.42 16 24 C 0.08 1.07 4.81 -4.43 -0.02 1.05 16 25 H 0.03 0.60 5.46 -51.93 -0.28 0.32 16 26 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 30 H 0.03 0.62 5.46 -51.93 -0.28 0.33 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.24 6.64 -51.92 -0.34 1.90 16 33 H 0.12 1.88 8.14 -51.92 -0.42 1.45 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.12 1.15 6.96 -51.93 -0.36 0.79 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.96 6.66 -51.93 -0.35 0.61 16 40 H 0.11 1.52 6.83 -51.93 -0.35 1.17 16 41 H 0.11 1.11 7.98 -51.93 -0.41 0.70 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -31.12 328.71 -7.06 -38.18 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.45 Total: 3.59 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 0.64 Total: -22.22 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.19 Total: -36.87 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -1.96 Total: -43.83 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.07 Total: -5.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 46.62 SS G_CDS: -0.48 Total: 46.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.12 -7.06 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.860 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds