Wall clock time and date at job start Tue Mar 31 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 C 1.50704 * 109.46940 * 240.00269 * 2 1 3 5 5 H 1.08007 * 119.99799 * 240.00355 * 4 2 1 6 6 C 1.37875 * 119.99993 * 59.99826 * 4 2 1 7 7 N 1.31507 * 120.00027 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99764 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47173 * 90.00362 * 8 6 4 10 10 H 1.48505 * 109.47146 * 210.00326 * 8 6 4 11 11 H 1.48495 * 109.47069 * 330.00013 * 8 6 4 12 12 C 1.52998 * 109.47169 * 120.00295 * 2 1 3 13 13 S 1.81400 * 109.46944 * 299.99944 * 12 2 1 14 14 O 1.42093 * 110.54510 * 68.37785 * 13 12 2 15 15 O 1.42101 * 110.54078 * 291.62189 * 13 12 2 16 16 N 1.65610 * 104.44821 * 179.97438 * 13 12 2 17 17 C 1.50106 * 120.63390 * 270.02144 * 16 13 12 18 18 C 1.46912 * 106.78112 * 111.32301 * 17 16 13 19 19 O 1.42383 * 113.79012 * 56.80082 * 18 17 16 20 20 C 1.39648 * 108.63633 * 267.45808 * 19 18 17 21 21 C 1.55049 * 110.65893 * 101.01392 * 20 19 18 22 22 F 1.39900 * 109.68063 * 202.51118 * 21 20 19 23 23 F 1.39894 * 109.38790 * 82.18916 * 21 20 19 24 24 C 1.43423 * 120.63329 * 89.99849 * 16 13 12 25 25 H 1.08999 * 109.46674 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.46845 * 59.99540 * 1 2 3 27 27 H 1.08990 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47115 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47068 * 299.99986 * 3 2 1 30 30 H 1.09000 * 109.46655 * 59.99937 * 3 2 1 31 31 H 0.97007 * 120.00014 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47299 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.47213 * 59.99776 * 12 2 1 34 34 H 1.09005 * 109.99131 * 230.64074 * 17 16 13 35 35 H 1.09005 * 109.99347 * 351.90908 * 17 16 13 36 36 H 1.09000 * 108.62456 * 177.91700 * 18 17 16 37 37 H 1.09004 * 108.62172 * 295.82708 * 18 17 16 38 38 H 1.09003 * 109.25450 * 221.45146 * 20 19 18 39 39 H 1.08999 * 109.25345 * 340.88981 * 20 19 18 40 40 H 1.09002 * 108.12928 * 31.13755 * 24 16 13 41 41 H 1.09005 * 108.12310 * 147.83339 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1615 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6292 -1.7583 -3.7123 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0281 -0.0184 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0530 -0.7410 3.9936 17 6 1.2837 -1.8906 4.5764 18 6 2.0205 -3.1134 4.2296 19 8 3.3722 -3.1158 4.6771 20 6 4.1820 -2.6184 3.6539 21 6 4.5563 -1.1381 3.9232 22 9 4.9030 -0.5135 2.7203 23 9 5.6375 -1.0863 4.8094 24 6 3.3335 -0.4149 4.5514 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1619 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7490 1.2492 34 1 1.2224 -1.7871 5.6598 35 1 0.2817 -1.9237 4.1484 36 1 1.5062 -3.9669 4.6713 37 1 2.0148 -3.2277 3.1456 38 1 5.0919 -3.2155 3.5932 39 1 3.6458 -2.6840 2.7072 40 1 3.4849 0.6595 4.4478 41 1 3.3098 -0.6507 5.6153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331994353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:44 Heat of formation + Delta-G solvation = -220.169903 kcal Electronic energy + Delta-G solvation = -29149.640205 eV Core-core repulsion = 24827.639866 eV Total energy + Delta-G solvation = -4322.000338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03010 -48.12260 -40.73444 -38.31879 -38.17443 -37.15953 -36.72472 -33.64959 -32.98025 -29.29001 -28.56572 -27.71776 -27.55221 -27.25400 -23.60654 -22.91387 -21.30216 -20.16514 -19.23967 -18.60833 -18.53707 -18.27052 -17.89741 -17.49014 -16.87653 -16.78927 -16.60248 -16.19757 -15.64723 -15.14884 -15.01254 -14.95561 -14.80817 -14.48446 -14.39831 -14.25122 -14.13390 -13.83635 -13.77238 -13.33698 -13.12606 -13.00489 -12.90932 -12.81532 -12.66550 -12.55964 -12.39985 -12.21961 -12.14198 -12.01734 -11.89396 -11.58722 -11.40451 -10.85070 -10.68993 -10.42283 -10.25343 -8.03891 -6.22256 -0.81311 1.43412 1.45974 1.48165 1.54038 2.42744 2.44629 2.59694 2.79116 2.96138 3.07235 3.19382 3.30659 3.34768 3.72546 3.95837 4.04683 4.15289 4.21175 4.22512 4.32225 4.46350 4.54377 4.56281 4.60508 4.81379 4.83504 4.86401 4.88793 4.95664 5.04506 5.31708 5.36159 5.49606 5.63929 5.85674 5.95374 6.09549 6.32539 6.82156 7.46147 8.96169 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.005158 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543037 B = 5427.113460 C = 5930.078421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.073 3.927 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.268 1.268 12 C -0.589 4.589 13 S 2.599 3.401 14 O -0.972 6.972 15 O -0.985 6.985 16 N -0.992 5.992 17 C 0.080 3.920 18 C 0.012 3.988 19 O -0.335 6.335 20 C 0.019 3.981 21 C 0.223 3.777 22 F -0.205 7.205 23 F -0.190 7.190 24 C 0.081 3.919 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 -9.944 15.403 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 C -0.218 4.218 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.193 1.193 12 C -0.722 4.722 13 S 2.698 3.302 14 O -0.962 6.962 15 O -0.975 6.975 16 N -0.828 5.828 17 C -0.042 4.042 18 C -0.065 4.065 19 O -0.251 6.251 20 C -0.060 4.060 21 C 0.184 3.816 22 F -0.187 7.187 23 F -0.171 7.171 24 C -0.048 4.048 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.775 -9.104 15.609 18.282 hybrid contribution 0.861 -0.121 -1.686 1.897 sum 3.636 -9.224 13.923 17.093 Atomic orbital electron populations 1.22204 0.97338 1.00853 1.01321 1.17886 0.92525 0.91802 0.90667 1.22212 0.99605 0.98743 1.01235 1.21268 1.31607 1.12309 0.90239 0.91753 1.25653 0.95182 0.95618 1.01621 1.69936 1.37241 1.23618 1.23866 0.85644 0.78906 0.78317 0.79297 1.20073 1.21463 1.19285 1.30605 1.12374 1.13648 1.15566 1.05335 0.74237 0.74916 0.75695 1.93509 1.30081 1.86708 1.85945 1.93502 1.78424 1.39703 1.85897 1.57722 1.26374 1.48735 1.49975 1.22168 0.96244 0.83007 1.02796 1.22409 0.83199 0.99436 1.01438 1.87779 1.17517 1.81704 1.38127 1.23661 0.99710 0.89417 0.93207 1.23769 0.85132 0.97390 0.75332 1.93033 1.93440 1.84603 1.47581 1.92994 1.57747 1.97420 1.68953 1.21726 0.81011 1.00652 1.01460 0.95015 0.91064 0.93458 0.94589 0.90924 0.95162 0.92910 0.85165 0.83804 0.86449 0.85972 0.84423 0.91000 0.86100 0.88405 0.88755 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 7.78 71.98 0.56 -7.05 16 2 C 0.07 3.46 0.52 -52.93 -0.03 3.43 16 3 C -0.16 -8.02 7.78 71.98 0.56 -7.46 16 4 C -0.52 -26.21 8.01 25.60 0.21 -26.00 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.98 5.15 84.66 0.44 1.41 16 7 N -0.91 -49.71 9.35 21.45 0.20 -49.51 16 8 Si 0.95 41.51 29.54 68.60 2.03 43.53 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 C -0.59 -21.56 5.12 71.98 0.37 -21.19 16 13 S 2.60 91.16 4.49 -56.49 -0.25 90.91 16 14 O -0.97 -36.95 14.26 -127.65 -1.82 -38.78 16 15 O -0.99 -40.95 14.18 -127.65 -1.81 -42.76 16 16 N -0.99 -24.16 2.83 -519.53 -1.47 -25.63 16 17 C 0.08 1.28 6.34 83.79 0.53 1.81 16 18 C 0.01 0.16 6.02 70.09 0.42 0.58 16 19 O -0.33 -5.55 10.24 -137.27 -1.41 -6.96 16 20 C 0.02 0.36 5.88 72.68 0.43 0.79 16 21 C 0.22 5.37 2.56 32.10 0.08 5.45 16 22 F -0.21 -6.21 15.65 44.97 0.70 -5.50 16 23 F -0.19 -4.68 17.10 44.97 0.77 -3.91 16 24 C 0.08 1.89 4.81 87.75 0.42 2.32 16 25 H 0.03 1.44 5.46 -2.39 -0.01 1.43 16 26 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 30 H 0.03 1.44 5.46 -2.39 -0.01 1.43 16 31 H 0.26 13.73 8.31 -92.70 -0.77 12.96 16 32 H 0.13 4.58 6.64 -2.39 -0.02 4.56 16 33 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 34 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.12 1.96 6.96 -2.38 -0.02 1.94 16 36 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.92 6.76 -2.38 -0.02 0.91 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.73 6.66 -2.39 -0.02 1.71 16 40 H 0.09 2.54 6.83 -2.39 -0.02 2.52 16 41 H 0.14 2.41 7.98 -2.38 -0.02 2.39 16 Total: -1.00 -67.18 328.71 1.98 -65.20 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.06 Total: 19.31 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 3.99 Total: -45.91 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.27 Total: -75.14 kcal Atomic # 8 Polarization: -83.45 SS G_CDS: -5.04 Total: -88.49 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 1.47 Total: -9.42 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 91.16 SS G_CDS: -0.25 Total: 90.91 kcal Total: -67.18 1.98 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.969 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds