Wall clock time and date at job start Tue Mar 31 2020 14:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00356 * 2 1 4 4 N 1.46501 * 109.47082 * 124.99881 * 3 2 1 5 5 C 1.46492 * 120.00206 * 279.36208 * 4 3 2 6 6 C 1.50705 * 109.46935 * 269.99612 * 5 4 3 7 7 C 1.33389 * 125.20294 * 89.99873 * 6 5 4 8 8 C 1.38416 * 114.92307 * 179.97438 * 7 6 5 9 9 C 1.33395 * 114.92264 * 0.02562 * 8 7 6 10 10 S 1.75881 * 125.20411 * 269.69601 * 6 5 4 11 11 C 1.34787 * 119.99575 * 99.35781 * 4 3 2 12 12 O 1.21585 * 119.99616 * 186.40923 * 11 4 3 13 13 C 1.47642 * 120.00046 * 6.40927 * 11 4 3 14 14 C 1.40013 * 119.89386 * 329.44298 * 13 11 4 15 15 C 1.36320 * 120.10275 * 179.71503 * 14 13 11 16 16 C 1.40881 * 119.89077 * 0.56298 * 15 14 13 17 17 C 1.41117 * 120.10153 * 179.69442 * 16 15 14 18 18 H 1.07995 * 119.99679 * 209.47801 * 17 16 15 19 19 C 1.40226 * 119.99771 * 29.48098 * 17 16 15 20 20 N 1.30641 * 120.00550 * 10.65731 * 19 17 16 21 21 Si 1.86801 * 119.99450 * 190.66325 * 19 17 16 22 22 H 1.48503 * 109.47513 * 59.99875 * 21 19 17 23 23 H 1.48501 * 109.46894 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47254 * 299.99674 * 21 19 17 25 25 C 1.40885 * 119.79726 * 359.70961 * 16 15 14 26 26 C 1.36320 * 119.88790 * 0.02562 * 25 16 15 27 27 H 1.08005 * 119.99572 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00359 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99519 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46997 * 5.00185 * 3 2 1 31 31 H 1.08997 * 109.46974 * 245.00417 * 3 2 1 32 32 H 1.09000 * 109.47798 * 29.99814 * 5 4 3 33 33 H 1.09003 * 109.47061 * 150.00174 * 5 4 3 34 34 H 1.08002 * 122.53508 * 359.96282 * 7 6 5 35 35 H 1.08002 * 122.53929 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20371 * 180.02562 * 9 8 7 37 37 H 1.08003 * 119.95078 * 0.02562 * 14 13 11 38 38 H 1.07998 * 120.05121 * 180.25327 * 15 14 13 39 39 H 0.96998 * 120.00595 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.05458 * 179.97438 * 25 16 15 41 41 H 1.08004 * 119.94448 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5079 1.6696 2.4715 6 6 2.6062 3.1588 2.6808 7 6 1.6484 4.0410 2.3912 8 6 1.9655 5.3590 2.6706 9 6 3.1811 5.5475 3.1868 10 16 3.9985 3.9988 3.3512 11 6 4.2968 1.0454 0.9394 12 8 5.0458 0.9530 1.8927 13 6 4.8146 0.8438 -0.4285 14 6 3.9777 0.3200 -1.4213 15 6 4.4496 0.1377 -2.6871 16 6 5.7851 0.4660 -2.9926 17 6 6.2801 0.2730 -4.2999 18 1 7.3268 0.0563 -4.4544 19 6 5.4129 0.3625 -5.3983 20 7 4.2019 0.8257 -5.2384 21 14 5.9895 -0.1806 -7.0900 22 1 6.3671 -1.6162 -7.0471 23 1 4.8929 0.0131 -8.0725 24 1 7.1667 0.6290 -7.4954 25 6 6.6250 0.9874 -1.9889 26 6 6.1426 1.1714 -0.7272 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.4685 1.3566 2.5708 33 1 3.1146 1.1570 3.2180 34 1 0.6977 3.7488 1.9703 35 1 1.2807 6.1732 2.4849 36 1 3.5975 6.5041 3.4658 37 1 2.9552 0.0648 -1.1851 38 1 3.8021 -0.2626 -3.4532 39 1 3.6022 0.8880 -5.9982 40 1 7.6496 1.2402 -2.2184 41 1 6.7858 1.5707 0.0431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340045768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:44 Heat of formation + Delta-G solvation = 66.302830 kcal Electronic energy + Delta-G solvation = -24729.887698 eV Core-core repulsion = 21281.848199 eV Total energy + Delta-G solvation = -3448.039499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80115 -37.80496 -37.06760 -35.98261 -33.88241 -33.11782 -31.08449 -29.67837 -29.52880 -26.80617 -26.10423 -24.96665 -23.08725 -21.44346 -21.15300 -20.15740 -19.26960 -18.67315 -17.53685 -17.11974 -16.47138 -16.13184 -15.42669 -15.36825 -14.94804 -14.45709 -14.25174 -13.53403 -13.32396 -13.19543 -12.79406 -12.76548 -12.74460 -12.61099 -12.36468 -12.20940 -11.84587 -11.55191 -11.33896 -11.24336 -11.20951 -11.07819 -10.97540 -10.62915 -10.54288 -10.03306 -9.46656 -9.43169 -9.29266 -9.08882 -8.58233 -8.37948 -8.34512 -7.65040 -7.48465 -6.94747 -4.59923 1.04137 1.76525 2.16539 2.22786 2.28101 2.76404 2.95224 2.96065 2.99166 2.99270 3.65038 3.75208 3.80476 4.53017 4.85712 5.05236 5.10641 5.13420 5.19831 5.48076 5.53480 5.56797 5.60075 5.67851 5.86458 5.95445 6.09228 6.14809 6.17197 6.27567 6.33239 6.53804 6.62457 6.66982 6.78712 6.85893 6.96226 7.05230 7.13192 7.45315 7.58329 7.78032 7.86473 8.01246 8.09390 8.41985 8.65995 8.75742 8.93223 9.96997 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.003366 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.672737 B = 8317.141260 C = 8893.705174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C 0.104 3.896 4 N -0.608 5.608 5 C 0.186 3.814 6 C -0.186 4.186 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.228 4.228 10 S 0.131 5.869 11 C 0.575 3.425 12 O -0.562 6.562 13 C -0.273 4.273 14 C -0.098 4.098 15 C -0.169 4.169 16 C 0.128 3.872 17 C -0.449 4.449 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.784 5.784 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.232 4.232 26 C -0.028 4.028 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 4.125 8.816 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C -0.018 4.018 4 N -0.340 5.340 5 C 0.061 3.939 6 C -0.305 4.305 7 C -0.168 4.168 8 C -0.168 4.168 9 C -0.364 4.364 10 S 0.395 5.605 11 C 0.371 3.629 12 O -0.442 6.442 13 C -0.278 4.278 14 C -0.116 4.116 15 C -0.188 4.188 16 C 0.125 3.875 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.251 4.251 26 C -0.047 4.047 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.177 0.823 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.087 3.692 9.724 12.586 hybrid contribution -1.332 0.457 -1.460 2.028 sum -8.418 4.149 8.263 12.505 Atomic orbital electron populations 1.23800 0.95664 1.01708 1.01228 1.23424 0.96160 0.99539 0.99190 1.21605 0.92969 0.94245 0.92985 1.47800 1.08556 1.70319 1.07315 1.19673 1.00616 0.87363 0.86236 1.25069 0.97503 1.00752 1.07168 1.20072 1.00535 0.92259 1.03900 1.20101 0.96896 0.97220 1.02633 1.25725 0.99332 1.01939 1.09387 1.84684 1.17991 0.97120 1.60663 1.18782 0.80131 0.74096 0.89881 1.90641 1.56691 1.53185 1.43715 1.18866 0.96251 1.20546 0.92113 1.21403 0.98118 0.98502 0.93616 1.21062 0.97415 1.05306 0.95028 1.17805 0.91758 0.85612 0.92354 1.19767 0.96497 1.40837 0.90618 0.89989 1.26024 0.94266 0.92380 1.01915 1.69687 1.06422 1.30908 1.33782 0.86250 0.79418 0.80432 0.80044 1.18630 1.20110 1.18779 1.20758 1.00061 1.10227 0.94102 1.20292 0.92957 0.95873 0.95615 0.88622 0.88487 0.86807 0.91324 0.84678 0.89268 0.89020 0.84669 0.84723 0.82289 0.85976 0.86016 0.90374 0.88393 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.16 -2.18 8.25 -36.03 -0.30 -2.48 16 3 C 0.10 1.57 5.33 -5.19 -0.03 1.54 16 4 N -0.61 -10.24 2.45 -177.63 -0.44 -10.68 16 5 C 0.19 2.69 5.94 -5.20 -0.03 2.66 16 6 C -0.19 -2.64 6.09 -36.00 -0.22 -2.86 16 7 C -0.14 -1.70 10.05 -41.21 -0.41 -2.12 16 8 C -0.14 -1.62 10.18 -41.21 -0.42 -2.04 16 9 C -0.23 -2.76 11.23 29.04 0.33 -2.44 16 10 S 0.13 1.90 23.33 -107.50 -2.51 -0.61 16 11 C 0.58 12.02 7.44 -12.42 -0.09 11.93 16 12 O -0.56 -12.91 16.25 5.29 0.09 -12.82 16 13 C -0.27 -6.15 5.59 -104.73 -0.59 -6.73 16 14 C -0.10 -2.13 7.39 -39.61 -0.29 -2.42 16 15 C -0.17 -4.06 8.59 -39.27 -0.34 -4.40 16 16 C 0.13 3.23 5.54 -106.80 -0.59 2.64 16 17 C -0.45 -11.17 9.05 -37.74 -0.34 -11.51 16 18 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 19 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 20 N -0.78 -18.67 10.87 55.56 0.60 -18.06 16 21 Si 0.91 17.43 29.57 -169.99 -5.03 12.40 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.23 -5.58 9.73 -39.27 -0.38 -5.96 16 26 C -0.03 -0.66 9.52 -39.61 -0.38 -1.04 16 27 H 0.10 0.93 7.84 -52.48 -0.41 0.52 16 28 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.11 1.62 7.61 -52.49 -0.40 1.22 16 30 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 31 H 0.14 2.39 3.99 -52.20 -0.21 2.18 16 32 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 33 H 0.09 1.42 7.34 -51.93 -0.38 1.04 16 34 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.12 2.29 2.95 -52.48 -0.15 2.13 16 38 H 0.12 2.98 6.26 -52.49 -0.33 2.66 16 39 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.10 2.18 7.91 -52.48 -0.42 1.77 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -27.79 359.50 -10.41 -38.20 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.78 Total: 11.39 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.76 Total: -25.24 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 0.17 Total: -28.74 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.79 -10.41 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340045768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.498 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds