Wall clock time and date at job start Tue Mar 31 2020 14:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00356 * 2 1 4 4 N 1.46501 * 109.47082 * 124.99881 * 3 2 1 5 5 C 1.46492 * 120.00206 * 279.36208 * 4 3 2 6 6 C 1.50705 * 109.46935 * 269.99612 * 5 4 3 7 7 C 1.33389 * 125.20294 * 89.99873 * 6 5 4 8 8 C 1.38416 * 114.92307 * 179.97438 * 7 6 5 9 9 C 1.33395 * 114.92264 * 0.02562 * 8 7 6 10 10 S 1.75881 * 125.20411 * 269.69601 * 6 5 4 11 11 C 1.34787 * 119.99575 * 99.35781 * 4 3 2 12 12 O 1.21585 * 119.99616 * 186.40923 * 11 4 3 13 13 C 1.47642 * 120.00046 * 6.40927 * 11 4 3 14 14 C 1.40013 * 119.89386 * 329.44298 * 13 11 4 15 15 C 1.36320 * 120.10275 * 179.71503 * 14 13 11 16 16 C 1.40881 * 119.89077 * 0.56298 * 15 14 13 17 17 C 1.41117 * 120.10153 * 179.69442 * 16 15 14 18 18 H 1.07995 * 119.99679 * 209.47801 * 17 16 15 19 19 C 1.40226 * 119.99771 * 29.48098 * 17 16 15 20 20 N 1.30641 * 120.00550 * 10.65731 * 19 17 16 21 21 Si 1.86801 * 119.99450 * 190.66325 * 19 17 16 22 22 H 1.48503 * 109.47513 * 59.99875 * 21 19 17 23 23 H 1.48501 * 109.46894 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47254 * 299.99674 * 21 19 17 25 25 C 1.40885 * 119.79726 * 359.70961 * 16 15 14 26 26 C 1.36320 * 119.88790 * 0.02562 * 25 16 15 27 27 H 1.08005 * 119.99572 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00359 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99519 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46997 * 5.00185 * 3 2 1 31 31 H 1.08997 * 109.46974 * 245.00417 * 3 2 1 32 32 H 1.09000 * 109.47798 * 29.99814 * 5 4 3 33 33 H 1.09003 * 109.47061 * 150.00174 * 5 4 3 34 34 H 1.08002 * 122.53508 * 359.96282 * 7 6 5 35 35 H 1.08002 * 122.53929 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20371 * 180.02562 * 9 8 7 37 37 H 1.08003 * 119.95078 * 0.02562 * 14 13 11 38 38 H 1.07998 * 120.05121 * 180.25327 * 15 14 13 39 39 H 0.96998 * 120.00595 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.05458 * 179.97438 * 25 16 15 41 41 H 1.08004 * 119.94448 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5079 1.6696 2.4715 6 6 2.6062 3.1588 2.6808 7 6 1.6484 4.0410 2.3912 8 6 1.9655 5.3590 2.6706 9 6 3.1811 5.5475 3.1868 10 16 3.9985 3.9988 3.3512 11 6 4.2968 1.0454 0.9394 12 8 5.0458 0.9530 1.8927 13 6 4.8146 0.8438 -0.4285 14 6 3.9777 0.3200 -1.4213 15 6 4.4496 0.1377 -2.6871 16 6 5.7851 0.4660 -2.9926 17 6 6.2801 0.2730 -4.2999 18 1 7.3268 0.0563 -4.4544 19 6 5.4129 0.3625 -5.3983 20 7 4.2019 0.8257 -5.2384 21 14 5.9895 -0.1806 -7.0900 22 1 6.3671 -1.6162 -7.0471 23 1 4.8929 0.0131 -8.0725 24 1 7.1667 0.6290 -7.4954 25 6 6.6250 0.9874 -1.9889 26 6 6.1426 1.1714 -0.7272 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.4685 1.3566 2.5708 33 1 3.1146 1.1570 3.2180 34 1 0.6977 3.7488 1.9703 35 1 1.2807 6.1732 2.4849 36 1 3.5975 6.5041 3.4658 37 1 2.9552 0.0648 -1.1851 38 1 3.8021 -0.2626 -3.4532 39 1 3.6022 0.8880 -5.9982 40 1 7.6496 1.2402 -2.2184 41 1 6.7858 1.5707 0.0431 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340045768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:43 Heat of formation + Delta-G solvation = 54.369847 kcal Electronic energy + Delta-G solvation = -24730.405151 eV Core-core repulsion = 21281.848199 eV Total energy + Delta-G solvation = -3448.556952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32547 -39.13373 -38.54943 -37.33839 -35.63539 -34.26406 -32.55812 -31.36073 -31.08300 -28.12320 -27.55995 -26.32623 -24.25737 -23.04592 -22.89870 -21.37830 -20.36046 -19.94683 -19.34859 -18.23709 -17.96811 -17.61457 -16.95757 -16.54447 -16.26791 -15.85946 -15.67924 -15.19516 -14.71055 -14.59358 -14.34520 -14.07009 -13.83425 -13.76764 -13.68067 -13.53560 -13.32803 -13.19025 -12.83511 -12.70964 -12.58567 -12.40308 -12.25770 -12.18296 -11.75873 -11.57124 -11.20718 -11.10228 -10.67717 -10.41040 -9.82185 -9.60531 -9.45367 -9.42316 -9.31874 -8.70049 -6.47480 0.03819 0.49351 0.74648 1.09774 1.18064 1.29541 1.40211 1.45052 1.51795 1.79536 2.06336 2.19311 2.39207 2.77338 3.64492 3.79530 3.87866 4.07681 4.09986 4.23406 4.30603 4.39428 4.42257 4.52294 4.54426 4.69282 4.76903 4.88452 4.93971 5.05367 5.08766 5.16344 5.19461 5.30875 5.35968 5.46791 5.61609 5.62561 5.72314 5.79493 5.88432 5.96460 6.00952 6.24874 6.46032 6.57031 6.81094 6.90351 7.33319 8.24297 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.003366 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.672737 B = 8317.141260 C = 8893.705174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.197 4.197 3 C 0.107 3.893 4 N -0.598 5.598 5 C 0.188 3.812 6 C -0.205 4.205 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.217 4.217 10 S 0.059 5.941 11 C 0.573 3.427 12 O -0.591 6.591 13 C -0.282 4.282 14 C -0.084 4.084 15 C -0.188 4.188 16 C 0.102 3.898 17 C -0.483 4.483 18 H 0.081 0.919 19 C 0.038 3.962 20 N -0.808 5.808 21 Si 0.986 3.014 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.261 1.261 25 C -0.248 4.248 26 C -0.040 4.040 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.183 0.817 37 H 0.154 0.846 38 H 0.115 0.885 39 H 0.295 0.705 40 H 0.102 0.898 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 4.893 8.340 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.216 4.216 3 C -0.014 4.014 4 N -0.328 5.328 5 C 0.064 3.936 6 C -0.324 4.324 7 C -0.155 4.155 8 C -0.171 4.171 9 C -0.353 4.353 10 S 0.322 5.678 11 C 0.367 3.633 12 O -0.474 6.474 13 C -0.286 4.286 14 C -0.101 4.101 15 C -0.207 4.207 16 C 0.099 3.901 17 C -0.511 4.511 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.432 5.432 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.186 1.186 25 C -0.267 4.267 26 C -0.059 4.059 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.181 0.819 35 H 0.184 0.816 36 H 0.200 0.800 37 H 0.171 0.829 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.347 4.474 9.264 14.591 hybrid contribution -0.504 0.316 -1.195 1.335 sum -10.851 4.790 8.069 14.346 Atomic orbital electron populations 1.24091 0.94567 1.03564 0.96412 1.23149 0.97025 0.97871 1.03560 1.21575 0.92645 0.96481 0.90747 1.47775 1.07328 1.68635 1.09064 1.19806 1.01882 0.87783 0.84111 1.24998 0.97570 1.00613 1.09214 1.20460 1.00839 0.92192 1.01962 1.20503 0.97067 0.97855 1.01702 1.26012 0.99158 1.01248 1.08845 1.84963 1.20340 1.00148 1.62340 1.18560 0.81616 0.74417 0.88692 1.90621 1.57970 1.54670 1.44129 1.19192 0.96110 1.19849 0.93486 1.21712 0.99315 0.96656 0.92465 1.21068 0.97186 1.06637 0.95856 1.18139 0.92644 0.86314 0.93040 1.20017 0.97043 1.42652 0.91414 0.90123 1.26817 0.94148 0.91740 1.05236 1.69718 1.07296 1.30817 1.35361 0.85181 0.79151 0.79793 0.75235 1.18411 1.18716 1.18569 1.20879 1.00417 1.10975 0.94428 1.20434 0.93800 0.96215 0.95463 0.86446 0.86797 0.88324 0.88559 0.87781 0.85829 0.90824 0.81893 0.81568 0.80001 0.82915 0.86751 0.89430 0.87983 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 14.32 67.78 0.97 -1.63 16 2 C -0.20 -4.76 8.25 25.64 0.21 -4.55 16 3 C 0.11 3.01 5.33 85.63 0.46 3.46 16 4 N -0.60 -19.66 2.45 -834.15 -2.05 -21.71 16 5 C 0.19 5.17 5.94 85.64 0.51 5.68 16 6 C -0.21 -5.53 6.09 24.59 0.15 -5.38 16 7 C -0.12 -2.65 10.05 21.21 0.21 -2.44 16 8 C -0.14 -2.83 10.18 21.22 0.22 -2.61 16 9 C -0.22 -4.83 11.23 66.72 0.75 -4.08 16 10 S 0.06 1.71 23.33 -56.49 -1.32 0.39 16 11 C 0.57 24.41 7.44 86.73 0.65 25.05 16 12 O -0.59 -28.11 16.25 -3.98 -0.06 -28.17 16 13 C -0.28 -13.08 5.59 -19.94 -0.11 -13.20 16 14 C -0.08 -3.70 7.39 22.25 0.16 -3.54 16 15 C -0.19 -9.36 8.59 22.47 0.19 -9.17 16 16 C 0.10 5.35 5.54 -21.28 -0.12 5.24 16 17 C -0.48 -24.86 9.05 23.46 0.21 -24.65 16 18 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 19 C 0.04 1.79 5.25 85.35 0.45 2.24 16 20 N -0.81 -38.75 10.87 21.87 0.24 -38.51 16 21 Si 0.99 35.50 29.57 68.60 2.03 37.52 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 24 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 25 C -0.25 -12.53 9.73 22.47 0.22 -12.31 16 26 C -0.04 -1.96 9.52 22.25 0.21 -1.74 16 27 H 0.12 1.59 7.84 -2.91 -0.02 1.57 16 28 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 29 H 0.10 2.70 7.61 -2.91 -0.02 2.68 16 30 H 0.10 2.17 7.79 -2.39 -0.02 2.15 16 31 H 0.10 3.61 3.99 -2.64 -0.01 3.60 16 32 H 0.12 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.07 2.30 7.34 -2.39 -0.02 2.29 16 34 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.15 5.73 2.95 -2.91 -0.01 5.72 16 38 H 0.11 5.78 6.26 -2.91 -0.02 5.76 16 39 H 0.29 12.62 8.29 -92.71 -0.77 11.86 16 40 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.10 4.66 7.91 -2.91 -0.02 4.63 16 Total: -1.00 -63.40 359.50 5.23 -58.17 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 1.05 Total: 35.94 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 5.34 Total: -43.64 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -1.81 Total: -60.22 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.17 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.52 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.32 Total: 0.39 kcal Total: -63.40 5.23 -58.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340045768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.540 kcal (2) G-P(sol) polarization free energy of solvation -63.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds