Wall clock time and date at job start Tue Mar 31 2020 15:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76203 * 103.00085 * 2 1 4 4 C 1.38782 * 120.10413 * 359.97438 * 3 2 1 5 5 C 1.38196 * 119.98905 * 180.02562 * 4 3 2 6 6 C 1.38314 * 120.21272 * 359.97438 * 5 4 3 7 7 C 1.38233 * 120.21218 * 0.02562 * 6 5 4 8 8 C 1.38697 * 120.00871 * 359.72656 * 7 6 5 9 9 N 1.39992 * 120.10861 * 180.30241 * 8 7 6 10 10 C 1.46501 * 119.99636 * 270.24963 * 9 8 7 11 11 C 1.34774 * 120.00522 * 90.24530 * 9 8 7 12 12 O 1.21621 * 119.99744 * 355.50164 * 11 9 8 13 13 C 1.47585 * 120.00168 * 175.50049 * 11 9 8 14 14 C 1.40038 * 119.89829 * 221.65503 * 13 11 9 15 15 C 1.36293 * 120.10463 * 179.72037 * 14 13 11 16 16 C 1.40905 * 119.89234 * 0.55009 * 15 14 13 17 17 C 1.41083 * 120.09871 * 179.69756 * 16 15 14 18 18 H 1.08001 * 119.99982 * 209.05712 * 17 16 15 19 19 C 1.40223 * 120.00252 * 29.06540 * 17 16 15 20 20 N 1.30650 * 120.00171 * 10.61255 * 19 17 16 21 21 Si 1.86797 * 120.00243 * 190.61465 * 19 17 16 22 22 H 1.48499 * 109.47313 * 59.99960 * 21 19 17 23 23 H 1.48503 * 109.47431 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47167 * 299.99900 * 21 19 17 25 25 C 1.40900 * 119.79814 * 359.72212 * 16 15 14 26 26 C 1.36304 * 119.88956 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46903 * 60.00303 * 1 2 3 29 29 H 1.08989 * 109.47511 * 300.00036 * 1 2 3 30 30 H 1.07996 * 120.00801 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.89496 * 179.97438 * 5 4 3 32 32 H 1.07993 * 119.89605 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.99805 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47481 * 95.23930 * 10 9 8 35 35 H 1.08999 * 109.47043 * 215.24830 * 10 9 8 36 36 H 1.09007 * 109.46884 * 335.24369 * 10 9 8 37 37 H 1.08003 * 119.94527 * 359.97438 * 14 13 11 38 38 H 1.08004 * 120.05249 * 180.25645 * 15 14 13 39 39 H 0.96995 * 120.00402 * 179.97438 * 20 19 17 40 40 H 1.07999 * 120.05219 * 179.97438 * 25 16 15 41 41 H 1.08004 * 119.94360 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1971 2.6652 -0.0005 5 6 1.5107 4.0111 -0.0011 6 6 2.8327 4.4177 -0.0005 7 6 3.8488 3.4805 0.0000 8 6 3.5443 2.1273 0.0057 9 7 4.5716 1.1764 0.0127 10 6 5.1158 0.6768 -1.2525 11 6 5.0600 0.7204 1.1831 12 8 4.6665 1.1939 2.2320 13 6 6.0725 -0.3534 1.1921 14 6 5.9848 -1.3876 2.1322 15 6 6.9142 -2.3844 2.1406 16 6 7.9710 -2.3670 1.2088 17 6 8.9391 -3.3933 1.2177 18 1 9.9458 -3.1889 0.8841 19 6 8.5943 -4.6786 1.6596 20 7 7.3409 -4.9843 1.8653 21 14 9.9271 -5.9539 1.9542 22 1 10.8662 -5.4577 2.9920 23 1 9.3060 -7.2217 2.4148 24 1 10.6686 -6.1959 0.6905 25 6 8.0583 -1.3213 0.2684 26 6 7.1212 -0.3315 0.2644 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8899 30 1 0.1637 2.3515 -0.0014 31 1 0.7210 4.7478 -0.0019 32 1 3.0720 5.4708 -0.0014 33 1 4.8799 3.8018 0.0008 34 1 6.0053 1.2488 -1.5164 35 1 5.3790 -0.3754 -1.1445 36 1 4.3677 0.7855 -2.0378 37 1 5.1771 -1.3974 2.8491 38 1 6.8435 -3.1838 2.8634 39 1 7.1023 -5.8735 2.1705 40 1 8.8668 -1.3037 -0.4473 41 1 7.1875 0.4707 -0.4557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340207958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:47 Heat of formation + Delta-G solvation = 8.154594 kcal Electronic energy + Delta-G solvation = -24562.008728 eV Core-core repulsion = 21111.447732 eV Total energy + Delta-G solvation = -3450.560996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53726 -39.79923 -38.73199 -36.52519 -35.60623 -32.37013 -32.25237 -31.65950 -30.61918 -29.72710 -28.00132 -27.40177 -24.47269 -23.83130 -23.04710 -22.55569 -20.73622 -19.35549 -18.82443 -18.03294 -17.79953 -17.16220 -17.02575 -16.38222 -15.89327 -15.58971 -15.51274 -15.08610 -14.88341 -14.81429 -14.67747 -14.50254 -14.14970 -13.73576 -13.69982 -13.66532 -13.41558 -13.35460 -13.11027 -12.84304 -12.78675 -12.61718 -12.30579 -12.26343 -11.75354 -11.37412 -11.18270 -11.13192 -10.79381 -10.74173 -9.89624 -9.88930 -9.53776 -9.32226 -8.69367 -8.44871 -6.46709 0.14805 0.26921 0.50924 0.55172 1.14131 1.39539 1.45490 1.50714 1.52313 1.89057 2.11171 2.19170 2.63675 2.74350 3.65925 3.83258 4.02035 4.09416 4.13710 4.20722 4.22107 4.31471 4.37284 4.37978 4.42758 4.52465 4.64689 4.77150 4.83322 4.87524 4.97488 5.04704 5.18729 5.19713 5.27884 5.37455 5.44558 5.61046 5.63954 5.76533 5.92029 6.02506 6.06514 6.22120 6.36230 6.58729 6.81518 6.91207 7.29108 8.25004 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.003086 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.210455 B = 9070.829815 C = 9770.042613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.168 6.168 3 C -0.095 4.095 4 C -0.134 4.134 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.130 3.870 9 N -0.572 5.572 10 C 0.084 3.916 11 C 0.584 3.416 12 O -0.590 6.590 13 C -0.274 4.274 14 C -0.056 4.056 15 C -0.189 4.189 16 C 0.101 3.899 17 C -0.479 4.479 18 H 0.089 0.911 19 C 0.032 3.968 20 N -0.816 5.816 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.254 1.254 25 C -0.237 4.237 26 C -0.046 4.046 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.292 0.708 40 H 0.117 0.883 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.428 11.724 -8.402 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.075 5.925 3 C -0.209 4.209 4 C -0.158 4.158 5 C -0.113 4.113 6 C -0.136 4.136 7 C -0.129 4.129 8 C 0.035 3.965 9 N -0.301 5.301 10 C -0.057 4.057 11 C 0.378 3.622 12 O -0.472 6.472 13 C -0.279 4.279 14 C -0.075 4.075 15 C -0.209 4.209 16 C 0.098 3.902 17 C -0.508 4.508 18 H 0.107 0.893 19 C -0.185 4.185 20 N -0.440 5.440 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.178 1.178 25 C -0.257 4.257 26 C -0.064 4.064 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.177 0.823 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.153 10.661 -7.820 17.298 hybrid contribution -0.270 0.063 0.459 0.536 sum -11.423 10.724 -7.361 17.311 Atomic orbital electron populations 1.23770 0.91334 1.08333 1.06694 1.86353 1.10065 1.04009 1.92078 1.22259 0.96102 0.97227 1.05315 1.21425 0.98350 0.93312 1.02742 1.21523 0.97420 0.95221 0.97127 1.21449 0.92151 1.00468 0.99531 1.21492 1.01056 0.91206 0.99178 1.17406 0.85955 0.89283 1.03889 1.45212 1.36056 1.41754 1.07114 1.22159 0.99554 1.00432 0.83548 1.18657 0.80266 0.80939 0.82310 1.90641 1.63049 1.60379 1.33086 1.19007 1.01935 1.00401 1.06533 1.20422 0.97320 0.93802 0.95958 1.20929 0.98753 0.99296 1.01903 1.18113 0.91590 0.91830 0.88618 1.20043 0.98309 0.94415 1.37995 0.89271 1.26950 0.98388 1.01710 0.91433 1.69780 1.19815 1.22764 1.31660 0.85137 0.77852 0.76052 0.80045 1.18389 1.19367 1.17818 1.20979 1.02913 0.99234 1.02530 1.20859 0.92747 0.97283 0.95537 0.86201 0.87790 0.89025 0.83271 0.81698 0.82264 0.85367 0.90390 0.90998 0.89958 0.89753 0.87687 0.89716 0.86492 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.15 113.37 1.04 -1.35 16 2 S -0.17 -5.15 21.98 -56.49 -1.24 -6.39 16 3 C -0.09 -2.84 6.13 22.72 0.14 -2.70 16 4 C -0.13 -2.94 9.36 22.39 0.21 -2.73 16 5 C -0.09 -1.66 10.04 22.28 0.22 -1.44 16 6 C -0.12 -2.29 10.04 22.29 0.22 -2.07 16 7 C -0.11 -2.96 9.96 22.38 0.22 -2.74 16 8 C 0.13 4.28 4.45 38.27 0.17 4.45 16 9 N -0.57 -20.85 2.21 -657.45 -1.45 -22.31 16 10 C 0.08 2.52 8.92 127.77 1.14 3.66 16 11 C 0.58 26.53 7.27 86.71 0.63 27.16 16 12 O -0.59 -30.74 16.92 -4.10 -0.07 -30.81 16 13 C -0.27 -13.09 5.16 -19.94 -0.10 -13.19 16 14 C -0.06 -2.91 9.58 22.25 0.21 -2.70 16 15 C -0.19 -10.31 8.59 22.47 0.19 -10.12 16 16 C 0.10 5.36 5.55 -21.28 -0.12 5.24 16 17 C -0.48 -24.63 9.05 23.45 0.21 -24.42 16 18 H 0.09 4.28 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.55 5.25 85.35 0.45 2.00 16 20 N -0.82 -41.75 10.84 21.87 0.24 -41.52 16 21 Si 0.99 36.47 29.57 68.60 2.03 38.50 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 25 C -0.24 -11.03 9.73 22.47 0.22 -10.81 16 26 C -0.05 -1.96 7.55 22.25 0.17 -1.80 16 27 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.10 1.40 7.75 -2.39 -0.02 1.38 16 29 H 0.09 1.49 7.75 -2.40 -0.02 1.47 16 30 H 0.15 2.40 5.88 -2.91 -0.02 2.39 16 31 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.08 1.96 6.84 -2.39 -0.02 1.94 16 35 H 0.07 2.45 6.02 -2.39 -0.01 2.43 16 36 H 0.08 2.12 8.01 -2.38 -0.02 2.10 16 37 H 0.08 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.11 5.96 6.22 -2.91 -0.02 5.94 16 39 H 0.29 13.53 8.29 -92.71 -0.77 12.76 16 40 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.13 4.67 5.54 -2.91 -0.02 4.65 16 Total: -1.00 -70.22 357.21 5.79 -64.44 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 1.05 Total: 31.66 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 5.23 Total: -33.57 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -1.22 Total: -63.82 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.81 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.24 Total: -6.39 kcal Total: -70.22 5.79 -64.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340207958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.591 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds