Wall clock time and date at job start Tue Mar 31 2020 14:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99802 * 2 1 4 4 N 1.46503 * 109.46866 * 126.89403 * 3 2 1 5 5 C 1.46496 * 120.00298 * 276.91812 * 4 3 2 6 6 C 1.50694 * 109.47381 * 270.00209 * 5 4 3 7 7 C 1.33389 * 125.20651 * 89.99592 * 6 5 4 8 8 C 1.38418 * 114.92211 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92410 * 0.02562 * 8 7 6 10 10 S 1.75884 * 125.20086 * 269.69292 * 6 5 4 11 11 C 1.34783 * 119.99992 * 96.91832 * 4 3 2 12 12 O 1.21541 * 119.99956 * 185.50676 * 11 4 3 13 13 C 1.47885 * 119.99698 * 5.23127 * 11 4 3 14 14 C 1.39925 * 120.02610 * 311.66947 * 13 11 4 15 15 C 1.38331 * 120.35460 * 179.78633 * 14 13 11 16 16 C 1.37751 * 120.41295 * 0.47187 * 15 14 13 17 17 C 1.40743 * 120.04315 * 359.78474 * 16 15 14 18 18 C 1.41439 * 120.18121 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99996 * 331.68995 * 18 17 16 20 20 C 1.39932 * 119.99894 * 151.68692 * 18 17 16 21 21 N 1.30826 * 120.00444 * 350.66305 * 20 18 17 22 22 Si 1.86804 * 120.00110 * 170.65908 * 20 18 17 23 23 H 1.48506 * 109.46713 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47226 * 119.99918 * 22 20 18 25 25 H 1.48498 * 109.47367 * 240.00746 * 22 20 18 26 26 C 1.38995 * 120.02614 * 131.94613 * 13 11 4 27 27 H 1.08001 * 120.00062 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99780 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00054 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47404 * 6.89792 * 3 2 1 31 31 H 1.08995 * 109.47571 * 246.89326 * 3 2 1 32 32 H 1.09000 * 109.47026 * 29.99990 * 5 4 3 33 33 H 1.09003 * 109.47019 * 149.99869 * 5 4 3 34 34 H 1.07997 * 122.53746 * 359.96222 * 7 6 5 35 35 H 1.08005 * 122.53935 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20640 * 180.02562 * 9 8 7 37 37 H 1.07995 * 119.82006 * 0.02588 * 14 13 11 38 38 H 1.08000 * 119.79201 * 180.21533 * 15 14 13 39 39 H 1.08001 * 119.97897 * 179.76763 * 16 15 14 40 40 H 0.97000 * 120.00288 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.19886 * 359.95536 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0257 1.3134 1.1047 5 6 2.5890 1.6810 2.4538 6 6 2.7412 3.1683 2.6433 7 6 1.8046 4.0780 2.3705 8 6 2.1718 5.3879 2.6260 9 6 3.4068 5.5421 3.1058 10 16 4.1782 3.9694 3.2650 11 6 4.3129 0.9827 0.8797 12 8 5.0887 0.8921 1.8109 13 6 4.7796 0.7242 -0.4996 14 6 4.0506 -0.1269 -1.3375 15 6 4.4786 -0.3699 -2.6303 16 6 5.6321 0.2150 -3.1046 17 6 6.3814 1.0698 -2.2746 18 6 7.5664 1.6715 -2.7585 19 1 8.1482 1.1795 -3.5238 20 6 7.9849 2.9043 -2.2455 21 7 7.1950 3.5870 -1.4571 22 14 9.6716 3.5753 -2.6862 23 1 10.3647 2.6194 -3.5869 24 1 9.5200 4.8824 -3.3747 25 1 10.4709 3.7577 -1.4480 26 6 5.9459 1.3220 -0.9627 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3616 2.1298 0.1234 31 1 2.5944 1.4182 -0.9451 32 1 1.5434 1.4031 2.5856 33 1 3.1998 1.1567 3.1889 34 1 0.8334 3.8127 1.9797 35 1 1.5086 6.2220 2.4502 36 1 3.8617 6.4874 3.3622 37 1 3.1470 -0.5934 -0.9742 38 1 3.9071 -1.0257 -3.2704 39 1 5.9617 0.0174 -4.1139 40 1 7.4852 4.4414 -1.1013 41 1 6.5137 1.9767 -0.3181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340562421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:47 Heat of formation + Delta-G solvation = 49.294544 kcal Electronic energy + Delta-G solvation = -25040.161176 eV Core-core repulsion = 21591.384142 eV Total energy + Delta-G solvation = -3448.777034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.74589 -37.73227 -36.98971 -35.93010 -33.71567 -33.15117 -30.99876 -29.68279 -29.37996 -26.70757 -25.41719 -25.30232 -23.23406 -21.66350 -21.09669 -20.18005 -19.21406 -18.64977 -17.45527 -17.10980 -16.22604 -15.97342 -15.37764 -15.10760 -15.05978 -14.61153 -14.24934 -13.64054 -13.35113 -13.13998 -12.82751 -12.74467 -12.68165 -12.55041 -12.36666 -12.24251 -11.87202 -11.60244 -11.33626 -11.30433 -11.15392 -11.03206 -10.62867 -10.45972 -10.45099 -10.08334 -9.68961 -9.42253 -9.26966 -9.12073 -8.56642 -8.40831 -8.24869 -7.59982 -7.44997 -6.74336 -4.44062 1.11408 1.85182 2.19327 2.25188 2.38966 2.80999 2.82684 3.07863 3.12549 3.13197 3.50265 3.70577 3.92654 4.59598 4.86432 5.03791 5.08860 5.16021 5.17619 5.50542 5.53383 5.56760 5.59758 5.65434 5.80431 5.89473 6.06043 6.13210 6.21580 6.32158 6.39730 6.55179 6.61518 6.64522 6.71168 6.94083 6.98618 7.05073 7.22579 7.38903 7.65260 7.76563 7.85036 7.98267 8.16741 8.50743 8.77235 8.82600 8.84338 10.18823 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.005064 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.489199 B = 5527.747388 C = 7602.834277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.129 3.871 4 N -0.606 5.606 5 C 0.186 3.814 6 C -0.192 4.192 7 C -0.134 4.134 8 C -0.140 4.140 9 C -0.225 4.225 10 S 0.141 5.859 11 C 0.574 3.426 12 O -0.541 6.541 13 C -0.123 4.123 14 C -0.223 4.223 15 C -0.101 4.101 16 C -0.208 4.208 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.080 0.920 20 C 0.072 3.928 21 N -0.798 5.798 22 Si 0.912 3.088 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.096 4.096 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.159 0.841 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.281 0.719 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 1.441 6.212 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.178 4.178 3 C 0.007 3.993 4 N -0.338 5.338 5 C 0.062 3.938 6 C -0.311 4.311 7 C -0.166 4.166 8 C -0.171 4.171 9 C -0.361 4.361 10 S 0.406 5.594 11 C 0.365 3.635 12 O -0.418 6.418 13 C -0.126 4.126 14 C -0.242 4.242 15 C -0.119 4.119 16 C -0.228 4.228 17 C 0.099 3.901 18 C -0.489 4.489 19 H 0.098 0.902 20 C -0.145 4.145 21 N -0.424 5.424 22 Si 0.736 3.264 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.197 1.197 26 C -0.116 4.116 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.177 0.823 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.996 1.138 7.352 12.461 hybrid contribution -0.779 1.054 -0.848 1.561 sum -10.775 2.192 6.504 12.775 Atomic orbital electron populations 1.23790 0.95673 1.01680 1.01825 1.23531 0.96037 0.99489 0.98746 1.20891 0.91743 0.94409 0.92305 1.47887 1.09131 1.68682 1.08113 1.19698 1.00992 0.87538 0.85611 1.25012 0.97558 1.00484 1.08060 1.20033 1.00520 0.92068 1.03977 1.20067 0.96478 0.97375 1.03147 1.25735 0.99206 1.01832 1.09352 1.84762 1.16320 0.96885 1.61480 1.19045 0.80362 0.74160 0.89913 1.90683 1.54039 1.51797 1.45261 1.19413 0.98660 1.02816 0.91753 1.20780 1.02123 1.06081 0.95253 1.20448 0.96834 0.99579 0.95021 1.21154 0.97056 1.05831 0.98753 1.17580 0.92134 0.90104 0.90321 1.19608 1.06641 1.03117 1.19543 0.90214 1.25912 0.98520 0.96713 0.93374 1.69751 1.35363 1.12223 1.25071 0.86198 0.81785 0.79104 0.79284 1.18427 1.19959 1.19684 1.21572 0.94193 0.99954 0.95895 0.88644 0.88550 0.86700 0.90910 0.86867 0.89083 0.88964 0.84772 0.84789 0.82297 0.87746 0.88914 0.88665 0.90807 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 14.32 29.01 0.42 -1.54 16 2 C -0.16 -2.00 8.52 -36.03 -0.31 -2.30 16 3 C 0.13 1.89 5.34 -5.19 -0.03 1.87 16 4 N -0.61 -10.33 2.44 -177.54 -0.43 -10.76 16 5 C 0.19 2.73 5.95 -5.20 -0.03 2.70 16 6 C -0.19 -2.86 6.09 -36.01 -0.22 -3.08 16 7 C -0.13 -1.76 10.05 -41.21 -0.41 -2.17 16 8 C -0.14 -1.76 10.18 -41.21 -0.42 -2.18 16 9 C -0.22 -3.00 11.23 29.04 0.33 -2.68 16 10 S 0.14 2.23 23.33 -107.50 -2.51 -0.28 16 11 C 0.57 12.41 7.23 -12.31 -0.09 12.32 16 12 O -0.54 -13.06 16.57 5.33 0.09 -12.97 16 13 C -0.12 -2.86 4.96 -105.04 -0.52 -3.39 16 14 C -0.22 -4.61 7.50 -38.92 -0.29 -4.90 16 15 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 16 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 17 C 0.10 2.64 5.56 -106.87 -0.59 2.05 16 18 C -0.46 -12.03 9.07 -37.73 -0.34 -12.37 16 19 H 0.08 2.00 7.86 -52.49 -0.41 1.59 16 20 C 0.07 1.80 5.28 -17.35 -0.09 1.71 16 21 N -0.80 -20.83 10.73 55.55 0.60 -20.23 16 22 Si 0.91 18.86 29.57 -169.99 -5.03 13.83 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.10 -2.52 8.33 -38.44 -0.32 -2.85 16 27 H 0.10 0.86 7.85 -52.49 -0.41 0.45 16 28 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.12 1.54 6.47 -52.48 -0.34 1.20 16 30 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 31 H 0.11 1.95 5.30 -51.93 -0.28 1.67 16 32 H 0.09 1.05 8.07 -51.93 -0.42 0.64 16 33 H 0.09 1.45 7.35 -51.93 -0.38 1.07 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 1.86 4.02 -52.49 -0.21 1.65 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 40 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 41 H 0.13 3.73 6.13 -52.48 -0.32 3.41 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -29.18 360.83 -10.40 -39.57 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.85 Total: 9.97 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.70 Total: -24.58 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.16 Total: -30.99 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.18 -10.40 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340562421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.869 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds