Wall clock time and date at job start Tue Mar 31 2020 14:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99802 * 2 1 4 4 N 1.46503 * 109.46866 * 126.89403 * 3 2 1 5 5 C 1.46496 * 120.00298 * 276.91812 * 4 3 2 6 6 C 1.50694 * 109.47381 * 270.00209 * 5 4 3 7 7 C 1.33389 * 125.20651 * 89.99592 * 6 5 4 8 8 C 1.38418 * 114.92211 * 179.97438 * 7 6 5 9 9 C 1.33390 * 114.92410 * 0.02562 * 8 7 6 10 10 S 1.75884 * 125.20086 * 269.69292 * 6 5 4 11 11 C 1.34783 * 119.99992 * 96.91832 * 4 3 2 12 12 O 1.21541 * 119.99956 * 185.50676 * 11 4 3 13 13 C 1.47885 * 119.99698 * 5.23127 * 11 4 3 14 14 C 1.39925 * 120.02610 * 311.66947 * 13 11 4 15 15 C 1.38331 * 120.35460 * 179.78633 * 14 13 11 16 16 C 1.37751 * 120.41295 * 0.47187 * 15 14 13 17 17 C 1.40743 * 120.04315 * 359.78474 * 16 15 14 18 18 C 1.41439 * 120.18121 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99996 * 331.68995 * 18 17 16 20 20 C 1.39932 * 119.99894 * 151.68692 * 18 17 16 21 21 N 1.30826 * 120.00444 * 350.66305 * 20 18 17 22 22 Si 1.86804 * 120.00110 * 170.65908 * 20 18 17 23 23 H 1.48506 * 109.46713 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47226 * 119.99918 * 22 20 18 25 25 H 1.48498 * 109.47367 * 240.00746 * 22 20 18 26 26 C 1.38995 * 120.02614 * 131.94613 * 13 11 4 27 27 H 1.08001 * 120.00062 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99780 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00054 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47404 * 6.89792 * 3 2 1 31 31 H 1.08995 * 109.47571 * 246.89326 * 3 2 1 32 32 H 1.09000 * 109.47026 * 29.99990 * 5 4 3 33 33 H 1.09003 * 109.47019 * 149.99869 * 5 4 3 34 34 H 1.07997 * 122.53746 * 359.96222 * 7 6 5 35 35 H 1.08005 * 122.53935 * 180.02562 * 8 7 6 36 36 H 1.08000 * 125.20640 * 180.02562 * 9 8 7 37 37 H 1.07995 * 119.82006 * 0.02588 * 14 13 11 38 38 H 1.08000 * 119.79201 * 180.21533 * 15 14 13 39 39 H 1.08001 * 119.97897 * 179.76763 * 16 15 14 40 40 H 0.97000 * 120.00288 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.19886 * 359.95536 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0257 1.3134 1.1047 5 6 2.5890 1.6810 2.4538 6 6 2.7412 3.1683 2.6433 7 6 1.8046 4.0780 2.3705 8 6 2.1718 5.3879 2.6260 9 6 3.4068 5.5421 3.1058 10 16 4.1782 3.9694 3.2650 11 6 4.3129 0.9827 0.8797 12 8 5.0887 0.8921 1.8109 13 6 4.7796 0.7242 -0.4996 14 6 4.0506 -0.1269 -1.3375 15 6 4.4786 -0.3699 -2.6303 16 6 5.6321 0.2150 -3.1046 17 6 6.3814 1.0698 -2.2746 18 6 7.5664 1.6715 -2.7585 19 1 8.1482 1.1795 -3.5238 20 6 7.9849 2.9043 -2.2455 21 7 7.1950 3.5870 -1.4571 22 14 9.6716 3.5753 -2.6862 23 1 10.3647 2.6194 -3.5869 24 1 9.5200 4.8824 -3.3747 25 1 10.4709 3.7577 -1.4480 26 6 5.9459 1.3220 -0.9627 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3616 2.1298 0.1234 31 1 2.5944 1.4182 -0.9451 32 1 1.5434 1.4031 2.5856 33 1 3.1998 1.1567 3.1889 34 1 0.8334 3.8127 1.9797 35 1 1.5086 6.2220 2.4502 36 1 3.8617 6.4874 3.3622 37 1 3.1470 -0.5934 -0.9742 38 1 3.9071 -1.0257 -3.2704 39 1 5.9617 0.0174 -4.1139 40 1 7.4852 4.4414 -1.1013 41 1 6.5137 1.9767 -0.3181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340562421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:46 Heat of formation + Delta-G solvation = 35.252922 kcal Electronic energy + Delta-G solvation = -25040.770066 eV Core-core repulsion = 21591.384142 eV Total energy + Delta-G solvation = -3449.385924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28930 -39.08253 -38.54952 -37.27421 -35.54374 -34.24879 -32.50930 -31.37838 -30.96899 -27.88549 -27.13368 -26.69605 -24.48553 -23.17770 -22.87028 -21.34739 -20.35595 -20.06634 -19.12298 -18.30016 -17.76156 -17.51676 -16.80844 -16.69728 -16.44266 -15.92322 -15.70065 -15.23020 -14.78706 -14.57064 -14.27395 -14.16683 -13.97341 -13.81498 -13.60840 -13.46117 -13.42537 -13.04650 -12.87622 -12.80695 -12.52083 -12.35333 -12.27996 -11.99434 -11.92772 -11.56862 -11.44877 -11.13436 -10.80096 -10.33056 -9.87470 -9.62468 -9.44869 -9.40085 -9.30942 -8.60417 -6.40449 0.02438 0.54175 0.73702 1.00852 1.17598 1.33115 1.35356 1.45223 1.50491 1.73597 1.91775 2.18737 2.33421 2.75580 3.64324 3.70676 3.82424 4.09399 4.11110 4.19989 4.24387 4.42739 4.48116 4.51352 4.67531 4.70769 4.74156 4.87874 4.89819 5.08611 5.12458 5.17269 5.21394 5.33517 5.33702 5.42869 5.54292 5.61649 5.75671 5.86618 5.91113 5.96963 6.05853 6.26417 6.33726 6.61324 6.90032 6.94775 7.17349 8.34183 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009978 B = 0.005064 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.489199 B = 5527.747388 C = 7602.834277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.593 5.593 5 C 0.187 3.813 6 C -0.207 4.207 7 C -0.120 4.120 8 C -0.140 4.140 9 C -0.218 4.218 10 S 0.048 5.952 11 C 0.567 3.433 12 O -0.581 6.581 13 C -0.131 4.131 14 C -0.201 4.201 15 C -0.097 4.097 16 C -0.214 4.214 17 C 0.070 3.930 18 C -0.496 4.496 19 H 0.080 0.920 20 C 0.028 3.972 21 N -0.834 5.834 22 Si 0.982 3.018 23 H -0.253 1.253 24 H -0.264 1.264 25 H -0.272 1.272 26 C -0.131 4.131 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.283 0.717 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.706 1.374 5.356 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C 0.007 3.993 4 N -0.324 5.324 5 C 0.064 3.936 6 C -0.325 4.325 7 C -0.151 4.151 8 C -0.170 4.170 9 C -0.354 4.354 10 S 0.312 5.688 11 C 0.357 3.643 12 O -0.461 6.461 13 C -0.134 4.134 14 C -0.220 4.220 15 C -0.115 4.115 16 C -0.234 4.234 17 C 0.068 3.932 18 C -0.527 4.527 19 H 0.099 0.901 20 C -0.185 4.185 21 N -0.461 5.461 22 Si 0.803 3.197 23 H -0.176 1.176 24 H -0.188 1.188 25 H -0.197 1.197 26 C -0.151 4.151 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.197 0.803 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.896 1.065 6.481 15.370 hybrid contribution 0.108 1.025 -0.553 1.170 sum -13.788 2.090 5.928 15.153 Atomic orbital electron populations 1.24071 0.94563 1.03506 0.96917 1.23192 0.96803 0.97593 1.03180 1.21007 0.91308 0.97018 0.89966 1.47895 1.07822 1.66733 1.09937 1.19878 1.02659 0.87476 0.83626 1.25005 0.96937 1.00711 1.09871 1.20467 1.01128 0.91727 1.01803 1.20517 0.96375 0.98320 1.01758 1.25989 0.99340 1.00760 1.09306 1.85129 1.19538 1.00511 1.63658 1.18924 0.81891 0.74618 0.88833 1.90654 1.55610 1.53880 1.45973 1.19701 0.97949 1.02548 0.93164 1.21225 1.02198 1.03868 0.94713 1.20900 0.95992 0.99106 0.95526 1.21422 0.97702 1.05194 0.99083 1.17907 0.93124 0.91423 0.90792 1.19864 1.07764 1.04235 1.20792 0.90142 1.26770 1.02101 0.96637 0.92979 1.69866 1.37215 1.12655 1.26386 0.85152 0.76866 0.78716 0.78966 1.17638 1.18829 1.19694 1.21337 0.96000 1.01728 0.96061 0.86690 0.86703 0.87792 0.88225 0.89841 0.84916 0.90898 0.81322 0.81356 0.80297 0.84222 0.84591 0.87437 0.90674 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 14.32 67.78 0.97 -1.30 16 2 C -0.19 -4.03 8.52 25.64 0.22 -3.81 16 3 C 0.13 3.45 5.34 85.63 0.46 3.91 16 4 N -0.59 -19.88 2.44 -833.90 -2.04 -21.91 16 5 C 0.19 5.29 5.95 85.63 0.51 5.80 16 6 C -0.21 -6.00 6.09 24.59 0.15 -5.85 16 7 C -0.12 -2.75 10.05 21.21 0.21 -2.54 16 8 C -0.14 -3.12 10.18 21.22 0.22 -2.90 16 9 C -0.22 -5.65 11.23 66.72 0.75 -4.90 16 10 S 0.05 1.60 23.33 -56.49 -1.32 0.28 16 11 C 0.57 25.43 7.23 86.80 0.63 26.05 16 12 O -0.58 -29.92 16.57 -3.85 -0.06 -29.99 16 13 C -0.13 -6.27 4.96 -20.13 -0.10 -6.37 16 14 C -0.20 -8.12 7.50 22.70 0.17 -7.95 16 15 C -0.10 -3.91 10.01 22.18 0.22 -3.69 16 16 C -0.21 -10.11 9.78 22.77 0.22 -9.89 16 17 C 0.07 3.82 5.56 -21.32 -0.12 3.71 16 18 C -0.50 -27.38 9.07 23.47 0.21 -27.17 16 19 H 0.08 4.22 7.86 -2.91 -0.02 4.20 16 20 C 0.03 1.49 5.28 85.25 0.45 1.94 16 21 N -0.83 -46.43 10.73 21.82 0.23 -46.20 16 22 Si 0.98 40.28 29.57 68.60 2.03 42.30 16 23 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 C -0.13 -7.33 8.33 23.01 0.19 -7.14 16 27 H 0.11 1.31 7.85 -2.91 -0.02 1.29 16 28 H 0.11 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.10 2.46 6.47 -2.91 -0.02 2.44 16 30 H 0.10 2.12 7.78 -2.39 -0.02 2.10 16 31 H 0.08 2.76 5.30 -2.39 -0.01 2.74 16 32 H 0.13 2.60 8.07 -2.39 -0.02 2.58 16 33 H 0.07 2.36 7.35 -2.39 -0.02 2.34 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.14 4.64 4.02 -2.91 -0.01 4.63 16 38 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.28 14.52 8.30 -92.71 -0.77 13.75 16 41 H 0.09 5.93 6.13 -2.91 -0.02 5.91 16 Total: -1.00 -70.69 360.83 5.26 -65.43 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 1.05 Total: 32.19 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 5.36 Total: -42.11 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -1.80 Total: -68.11 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -70.69 5.26 -65.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340562421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.686 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds