Wall clock time and date at job start Tue Mar 31 2020 15:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00250 * 2 1 4 4 C 1.46995 * 119.99817 * 180.02562 * 2 1 3 5 5 C 1.39893 * 120.16084 * 359.72483 * 4 2 1 6 6 C 1.38418 * 119.77185 * 179.76251 * 5 4 2 7 7 N 1.39984 * 119.94807 * 180.22987 * 6 5 4 8 8 C 1.34781 * 119.99830 * 33.88022 * 7 6 5 9 9 O 1.21563 * 119.99765 * 5.13217 * 8 7 6 10 10 C 1.47847 * 119.99902 * 185.13589 * 8 7 6 11 11 C 1.39939 * 120.02706 * 359.71946 * 10 8 7 12 12 C 1.38323 * 120.35569 * 179.76501 * 11 10 8 13 13 C 1.37755 * 120.41642 * 0.51458 * 12 11 10 14 14 C 1.40760 * 120.04047 * 359.74469 * 13 12 11 15 15 C 1.41432 * 120.17574 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00309 * 331.74826 * 15 14 13 17 17 C 1.39940 * 120.00152 * 151.75545 * 15 14 13 18 18 N 1.30831 * 119.99637 * 348.99039 * 17 15 14 19 19 Si 1.86794 * 120.00531 * 168.99560 * 17 15 14 20 20 H 1.48506 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47550 * 119.99436 * 19 17 15 22 22 H 1.48502 * 109.47180 * 240.00058 * 19 17 15 23 23 C 1.39017 * 120.02812 * 179.97438 * 10 8 7 24 24 C 1.39120 * 120.10272 * 0.49141 * 6 5 4 25 25 C 1.38131 * 120.32788 * 359.76366 * 24 6 5 26 26 C 1.38289 * 120.22567 * 359.97438 * 25 24 6 27 27 F 1.35099 * 120.05561 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47151 * 239.99730 * 1 2 3 29 29 H 1.08997 * 109.46850 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47100 * 119.99484 * 1 2 3 31 31 H 1.07993 * 120.11465 * 359.97438 * 5 4 2 32 32 H 0.96993 * 119.99988 * 213.87839 * 7 6 5 33 33 H 1.07992 * 119.81762 * 0.02787 * 11 10 8 34 34 H 1.08003 * 119.79427 * 180.24085 * 12 11 10 35 35 H 1.07997 * 119.98378 * 179.76011 * 13 12 11 36 36 H 0.97002 * 120.00113 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.19620 * 359.96001 * 23 10 8 38 38 H 1.07996 * 119.83455 * 179.73932 * 24 6 5 39 39 H 1.07997 * 119.88685 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5459 -2.4865 0.0047 6 6 2.2460 -3.6805 -0.0009 7 7 1.5532 -4.8969 -0.0005 8 6 0.3748 -5.0014 -0.6464 9 8 -0.0412 -4.0692 -1.3064 10 6 -0.4117 -6.2497 -0.5519 11 6 0.0696 -7.3252 0.2031 12 6 -0.6630 -8.4945 0.3000 13 6 -1.8692 -8.6181 -0.3537 14 6 -2.3669 -7.5490 -1.1222 15 6 -3.6053 -7.6725 -1.7942 16 1 -3.9515 -8.6442 -2.1144 17 6 -4.3821 -6.5357 -2.0443 18 7 -4.0775 -5.3973 -1.4760 19 14 -5.8540 -6.6435 -3.1894 20 1 -5.9833 -8.0321 -3.6999 21 1 -7.0860 -6.2715 -2.4484 22 1 -5.6626 -5.7128 -4.3306 23 6 -1.6274 -6.3580 -1.2174 24 6 3.6372 -3.6736 -0.0013 25 6 4.3288 -2.4779 -0.0012 26 6 3.6430 -1.2771 -0.0011 27 9 4.3229 -0.1096 -0.0004 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 0.4660 -2.4916 0.0096 32 1 1.9211 -5.6644 0.4645 33 1 1.0160 -7.2402 0.7162 34 1 -0.2848 -9.3175 0.8884 35 1 -2.4336 -9.5356 -0.2763 36 1 -4.6162 -4.6094 -1.6490 37 1 -2.0010 -5.5318 -1.8041 38 1 4.1791 -4.6078 -0.0014 39 1 5.4088 -2.4809 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341128897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:24 Heat of formation + Delta-G solvation = -72.694900 kcal Electronic energy + Delta-G solvation = -26229.014344 eV Core-core repulsion = 22208.734275 eV Total energy + Delta-G solvation = -4020.280069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.90687 -40.52566 -39.37005 -38.12535 -37.07360 -34.52806 -33.78411 -32.25487 -30.72060 -29.61895 -29.43050 -28.81969 -25.46735 -24.37282 -23.65963 -21.96696 -21.12709 -20.10903 -19.81021 -18.09581 -17.74837 -17.30862 -16.63198 -16.05447 -15.79238 -15.54077 -15.20750 -14.82255 -14.73997 -14.67618 -14.58046 -14.17462 -13.94451 -13.44004 -13.18550 -13.11397 -12.78577 -12.68281 -12.52091 -12.25512 -12.15062 -11.78551 -11.71010 -11.28515 -11.21013 -10.87561 -10.60828 -10.25791 -10.17114 -9.85420 -9.80015 -9.43553 -9.38584 -9.21747 -8.13742 -7.79001 -7.63907 -6.87433 -4.56212 0.38815 1.00166 1.93067 2.26673 2.67779 3.01872 3.03291 3.06481 3.18458 3.38375 3.69920 3.84147 3.85967 4.12448 4.46749 4.51810 4.79816 5.00678 5.01678 5.23598 5.32176 5.40285 5.43208 5.44155 5.68424 5.81494 5.87341 5.93386 5.97880 6.08642 6.11148 6.33130 6.55653 6.75816 6.84599 6.85823 7.08522 7.20814 7.40684 7.45941 7.53915 7.69585 7.83996 8.02226 8.36168 8.51317 8.67558 8.70039 10.06394 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003177 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315983 B = 8812.441070 C =10395.586029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.397 3.603 3 O -0.452 6.452 4 C -0.189 4.189 5 C -0.051 4.051 6 C 0.142 3.858 7 N -0.678 5.678 8 C 0.566 3.434 9 O -0.524 6.524 10 C -0.134 4.134 11 C -0.214 4.214 12 C -0.098 4.098 13 C -0.204 4.204 14 C 0.097 3.903 15 C -0.458 4.458 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.791 5.791 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.081 4.081 24 C -0.092 4.092 25 C -0.147 4.147 26 C 0.128 3.872 27 F -0.123 7.123 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.413 0.587 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.284 0.716 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 2.970 3.968 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.275 3.725 3 O -0.328 6.328 4 C -0.191 4.191 5 C -0.071 4.071 6 C 0.046 3.954 7 N -0.325 5.325 8 C 0.359 3.641 9 O -0.400 6.400 10 C -0.138 4.138 11 C -0.235 4.235 12 C -0.117 4.117 13 C -0.224 4.224 14 C 0.094 3.906 15 C -0.487 4.487 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.416 5.416 19 Si 0.738 3.262 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.101 4.101 24 C -0.113 4.113 25 C -0.166 4.166 26 C 0.107 3.893 27 F -0.101 7.101 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.175 0.825 32 H 0.251 0.749 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.121 4.432 3.508 11.592 hybrid contribution -0.338 -0.420 -0.152 0.560 sum 9.783 4.011 3.357 11.093 Atomic orbital electron populations 1.22250 0.92805 1.05162 1.05423 1.22370 0.92073 0.86886 0.71142 1.90575 1.72184 1.33908 1.36090 1.20520 0.92351 0.96216 1.10031 1.21483 1.01812 0.89036 0.94782 1.17715 0.90863 0.86585 1.00224 1.43706 1.22636 1.11477 1.54642 1.19070 0.79271 0.88803 0.76955 1.90719 1.69031 1.40520 1.39713 1.19335 0.97241 0.92230 1.04948 1.20349 1.00647 0.94959 1.07497 1.20454 0.95404 0.96219 0.99586 1.21200 0.98039 1.00417 1.02737 1.17626 0.92412 0.90711 0.89803 1.19643 1.02135 0.94641 1.32263 0.90005 1.25953 0.99361 0.94663 0.94721 1.69742 1.36786 1.01101 1.34003 0.86168 0.80191 0.79724 0.80164 1.18382 1.19837 1.19578 1.21736 0.90599 0.99659 0.98121 1.21004 0.92167 0.98532 0.99618 1.20871 1.00928 0.90283 1.04563 1.17847 0.88943 0.81816 1.00651 1.91554 1.79404 1.45983 1.93134 0.88604 0.89595 0.88045 0.82515 0.74874 0.89132 0.88656 0.88386 0.90485 0.84382 0.84142 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 8.93 36.01 0.32 -1.95 16 2 C 0.40 5.64 7.22 -30.76 -0.22 5.42 16 3 O -0.45 -7.63 16.07 5.56 0.09 -7.54 16 4 C -0.19 -2.65 5.87 -105.03 -0.62 -3.27 16 5 C -0.05 -0.72 8.07 -38.90 -0.31 -1.04 16 6 C 0.14 1.90 6.26 -83.74 -0.52 1.37 16 7 N -0.68 -9.68 5.29 -10.74 -0.06 -9.73 16 8 C 0.57 10.75 7.50 -12.33 -0.09 10.66 16 9 O -0.52 -11.26 14.04 5.31 0.07 -11.19 16 10 C -0.13 -2.82 5.87 -105.04 -0.62 -3.44 16 11 C -0.21 -3.99 9.55 -38.91 -0.37 -4.36 16 12 C -0.10 -1.90 10.01 -39.73 -0.40 -2.30 16 13 C -0.20 -4.47 9.78 -38.81 -0.38 -4.85 16 14 C 0.10 2.38 5.55 -106.87 -0.59 1.79 16 15 C -0.46 -11.31 9.06 -37.73 -0.34 -11.65 16 16 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 17 C 0.07 1.69 5.25 -17.34 -0.09 1.60 16 18 N -0.79 -19.62 10.81 55.55 0.60 -19.02 16 19 Si 0.91 17.86 29.57 -169.99 -5.03 12.83 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.08 -1.98 8.21 -38.44 -0.32 -2.29 16 24 C -0.09 -0.97 9.95 -39.29 -0.39 -1.36 16 25 C -0.15 -1.57 10.00 -39.60 -0.40 -1.96 16 26 C 0.13 1.72 7.29 -38.86 -0.28 1.44 16 27 F -0.12 -1.82 15.54 2.25 0.03 -1.79 16 28 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.09 0.89 8.12 -51.93 -0.42 0.46 16 30 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 31 H 0.16 2.40 5.43 -52.49 -0.29 2.12 16 32 H 0.41 4.74 6.85 -40.82 -0.28 4.46 16 33 H 0.09 1.32 6.39 -52.49 -0.34 0.99 16 34 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 37 H 0.14 3.66 5.76 -52.49 -0.30 3.35 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -28.99 344.14 -8.43 -37.42 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.70 Total: 10.00 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -5.63 Total: -16.17 kcal Atomic # 7 Polarization: -29.30 SS G_CDS: 0.54 Total: -28.76 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.99 -8.43 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341128897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.275 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds