Wall clock time and date at job start Tue Mar 31 2020 15:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00250 * 2 1 4 4 C 1.46995 * 119.99817 * 180.02562 * 2 1 3 5 5 C 1.39893 * 120.16084 * 359.72483 * 4 2 1 6 6 C 1.38418 * 119.77185 * 179.76251 * 5 4 2 7 7 N 1.39984 * 119.94807 * 180.22987 * 6 5 4 8 8 C 1.34781 * 119.99830 * 33.88022 * 7 6 5 9 9 O 1.21563 * 119.99765 * 5.13217 * 8 7 6 10 10 C 1.47847 * 119.99902 * 185.13589 * 8 7 6 11 11 C 1.39939 * 120.02706 * 359.71946 * 10 8 7 12 12 C 1.38323 * 120.35569 * 179.76501 * 11 10 8 13 13 C 1.37755 * 120.41642 * 0.51458 * 12 11 10 14 14 C 1.40760 * 120.04047 * 359.74469 * 13 12 11 15 15 C 1.41432 * 120.17574 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00309 * 331.74826 * 15 14 13 17 17 C 1.39940 * 120.00152 * 151.75545 * 15 14 13 18 18 N 1.30831 * 119.99637 * 348.99039 * 17 15 14 19 19 Si 1.86794 * 120.00531 * 168.99560 * 17 15 14 20 20 H 1.48506 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47550 * 119.99436 * 19 17 15 22 22 H 1.48502 * 109.47180 * 240.00058 * 19 17 15 23 23 C 1.39017 * 120.02812 * 179.97438 * 10 8 7 24 24 C 1.39120 * 120.10272 * 0.49141 * 6 5 4 25 25 C 1.38131 * 120.32788 * 359.76366 * 24 6 5 26 26 C 1.38289 * 120.22567 * 359.97438 * 25 24 6 27 27 F 1.35099 * 120.05561 * 179.97438 * 26 25 24 28 28 H 1.08995 * 109.47151 * 239.99730 * 1 2 3 29 29 H 1.08997 * 109.46850 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47100 * 119.99484 * 1 2 3 31 31 H 1.07993 * 120.11465 * 359.97438 * 5 4 2 32 32 H 0.96993 * 119.99988 * 213.87839 * 7 6 5 33 33 H 1.07992 * 119.81762 * 0.02787 * 11 10 8 34 34 H 1.08003 * 119.79427 * 180.24085 * 12 11 10 35 35 H 1.07997 * 119.98378 * 179.76011 * 13 12 11 36 36 H 0.97002 * 120.00113 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.19620 * 359.96001 * 23 10 8 38 38 H 1.07996 * 119.83455 * 179.73932 * 24 6 5 39 39 H 1.07997 * 119.88685 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5459 -2.4865 0.0047 6 6 2.2460 -3.6805 -0.0009 7 7 1.5532 -4.8969 -0.0005 8 6 0.3748 -5.0014 -0.6464 9 8 -0.0412 -4.0692 -1.3064 10 6 -0.4117 -6.2497 -0.5519 11 6 0.0696 -7.3252 0.2031 12 6 -0.6630 -8.4945 0.3000 13 6 -1.8692 -8.6181 -0.3537 14 6 -2.3669 -7.5490 -1.1222 15 6 -3.6053 -7.6725 -1.7942 16 1 -3.9515 -8.6442 -2.1144 17 6 -4.3821 -6.5357 -2.0443 18 7 -4.0775 -5.3973 -1.4760 19 14 -5.8540 -6.6435 -3.1894 20 1 -5.9833 -8.0321 -3.6999 21 1 -7.0860 -6.2715 -2.4484 22 1 -5.6626 -5.7128 -4.3306 23 6 -1.6274 -6.3580 -1.2174 24 6 3.6372 -3.6736 -0.0013 25 6 4.3288 -2.4779 -0.0012 26 6 3.6430 -1.2771 -0.0011 27 9 4.3229 -0.1096 -0.0004 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8901 31 1 0.4660 -2.4916 0.0096 32 1 1.9211 -5.6644 0.4645 33 1 1.0160 -7.2402 0.7162 34 1 -0.2848 -9.3175 0.8884 35 1 -2.4336 -9.5356 -0.2763 36 1 -4.6162 -4.6094 -1.6490 37 1 -2.0010 -5.5318 -1.8041 38 1 4.1791 -4.6078 -0.0014 39 1 5.4088 -2.4809 -0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341128897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:23 Heat of formation + Delta-G solvation = -88.201644 kcal Electronic energy + Delta-G solvation = -26229.686767 eV Core-core repulsion = 22208.734275 eV Total energy + Delta-G solvation = -4020.952492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.99794 -41.76364 -40.61314 -39.42890 -38.58070 -35.88528 -35.42610 -33.26931 -32.28204 -31.28243 -30.41372 -30.04372 -27.19777 -25.43643 -24.99195 -23.20892 -22.75303 -21.27948 -21.21573 -19.60738 -18.85255 -18.54775 -17.92065 -17.44238 -16.97855 -16.84153 -16.58384 -16.39531 -15.97007 -15.85935 -15.71675 -15.59105 -15.10260 -14.98332 -14.54195 -14.29710 -14.27081 -13.96971 -13.63579 -13.43340 -13.21314 -13.18994 -12.92770 -12.80274 -12.72419 -12.52794 -12.17912 -11.87461 -11.50010 -11.44574 -11.11421 -10.94896 -10.83786 -10.27354 -9.56056 -9.33955 -9.14728 -8.60470 -6.38669 -0.64335 -0.07026 0.40123 1.02185 1.18057 1.39119 1.46951 1.53244 1.95069 2.00710 2.21073 2.52059 2.81624 2.85684 3.09850 3.52665 3.69412 3.82590 3.91407 4.05920 4.09574 4.31049 4.43569 4.44560 4.48458 4.60008 4.69815 4.86672 4.90578 4.94550 4.99841 5.08760 5.12287 5.19313 5.26131 5.34730 5.52547 5.73411 5.85401 5.91767 6.07724 6.29269 6.30263 6.41770 6.63070 6.91199 6.94905 7.13468 8.35057 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003177 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315983 B = 8812.441070 C =10395.586029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.395 3.605 3 O -0.486 6.486 4 C -0.206 4.206 5 C -0.060 4.060 6 C 0.121 3.879 7 N -0.654 5.654 8 C 0.566 3.434 9 O -0.558 6.558 10 C -0.141 4.141 11 C -0.188 4.188 12 C -0.099 4.099 13 C -0.210 4.210 14 C 0.064 3.936 15 C -0.497 4.497 16 H 0.080 0.920 17 C 0.030 3.970 18 N -0.831 5.831 19 Si 0.980 3.020 20 H -0.254 1.254 21 H -0.266 1.266 22 H -0.271 1.271 23 C -0.118 4.118 24 C -0.065 4.065 25 C -0.132 4.132 26 C 0.114 3.886 27 F -0.134 7.134 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.430 0.570 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.285 0.715 37 H 0.104 0.896 38 H 0.185 0.815 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 1.118 5.232 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.276 3.724 3 O -0.365 6.365 4 C -0.208 4.208 5 C -0.080 4.080 6 C 0.027 3.973 7 N -0.302 5.302 8 C 0.358 3.642 9 O -0.437 6.437 10 C -0.145 4.145 11 C -0.207 4.207 12 C -0.117 4.117 13 C -0.230 4.230 14 C 0.062 3.938 15 C -0.527 4.527 16 H 0.098 0.902 17 C -0.184 4.184 18 N -0.457 5.457 19 Si 0.801 3.199 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.196 1.196 23 C -0.139 4.139 24 C -0.085 4.085 25 C -0.151 4.151 26 C 0.093 3.907 27 F -0.112 7.112 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.157 0.843 32 H 0.271 0.729 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.203 0.797 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.993 2.546 4.807 14.086 hybrid contribution -0.955 0.100 -0.415 1.046 sum 12.038 2.646 4.392 13.085 Atomic orbital electron populations 1.22242 0.91164 1.05949 1.05804 1.22774 0.93136 0.86685 0.69795 1.90554 1.72940 1.34884 1.38087 1.20517 0.93030 0.95884 1.11372 1.21350 1.01166 0.89871 0.95654 1.17908 0.92148 0.85526 1.01747 1.43290 1.20962 1.12471 1.53461 1.18811 0.80440 0.87688 0.77253 1.90714 1.70202 1.41357 1.41430 1.19619 0.96462 0.94009 1.04383 1.20937 1.01816 0.93215 1.04765 1.20947 0.94164 0.97741 0.98860 1.21495 0.99298 0.99870 1.02313 1.17943 0.92902 0.91868 0.91083 1.19870 1.03288 0.95039 1.34518 0.90173 1.26731 1.01827 0.94091 0.95736 1.69843 1.38276 1.01768 1.35834 0.85175 0.76954 0.79701 0.78031 1.17764 1.19127 1.19610 1.21521 0.92791 0.99238 1.00320 1.21403 0.90592 1.00236 0.96266 1.21273 1.02661 0.88835 1.02355 1.18241 0.88881 0.82534 1.01007 1.91527 1.79465 1.46961 1.93274 0.87316 0.88609 0.88388 0.84332 0.72888 0.83832 0.84256 0.87533 0.90436 0.87780 0.79746 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.61 8.93 71.24 0.64 -3.97 16 2 C 0.40 11.54 7.22 27.98 0.20 11.75 16 3 O -0.49 -16.89 16.07 -3.02 -0.05 -16.94 16 4 C -0.21 -5.72 5.87 -20.13 -0.12 -5.84 16 5 C -0.06 -1.68 8.07 22.71 0.18 -1.50 16 6 C 0.12 2.91 6.26 38.09 0.24 3.15 16 7 N -0.65 -16.62 5.29 -306.16 -1.62 -18.23 16 8 C 0.57 21.06 7.50 86.79 0.65 21.71 16 9 O -0.56 -24.75 14.04 -3.91 -0.05 -24.80 16 10 C -0.14 -5.84 5.87 -20.13 -0.12 -5.96 16 11 C -0.19 -6.25 9.55 22.70 0.22 -6.04 16 12 C -0.10 -3.47 10.01 22.18 0.22 -3.25 16 13 C -0.21 -9.04 9.78 22.77 0.22 -8.82 16 14 C 0.06 3.26 5.55 -21.32 -0.12 3.14 16 15 C -0.50 -25.83 9.06 23.47 0.21 -25.61 16 16 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 17 C 0.03 1.50 5.25 85.25 0.45 1.95 16 18 N -0.83 -43.91 10.81 21.83 0.24 -43.67 16 19 Si 0.98 38.25 29.57 68.60 2.03 40.28 16 20 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 C -0.12 -6.00 8.21 23.01 0.19 -5.81 16 24 C -0.06 -1.04 9.95 22.46 0.22 -0.82 16 25 C -0.13 -2.27 10.00 22.26 0.22 -2.04 16 26 C 0.11 2.87 7.29 22.74 0.17 3.04 16 27 F -0.13 -3.87 15.54 44.97 0.70 -3.17 16 28 H 0.11 2.26 8.08 -2.39 -0.02 2.24 16 29 H 0.10 2.03 8.12 -2.39 -0.02 2.02 16 30 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 31 H 0.14 4.40 5.43 -2.91 -0.02 4.39 16 32 H 0.43 7.60 6.85 -92.71 -0.64 6.97 16 33 H 0.14 3.23 6.39 -2.91 -0.02 3.21 16 34 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.11 4.28 8.06 -2.91 -0.02 4.25 16 36 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 37 H 0.10 5.95 5.76 -2.91 -0.02 5.93 16 38 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -69.40 344.14 5.41 -63.99 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.49 Total: 27.48 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.68 Total: -24.93 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.38 Total: -61.91 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.10 Total: -41.74 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.70 Total: -3.17 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -69.40 5.41 -63.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341128897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.211 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds