Wall clock time and date at job start Tue Mar 31 2020 15:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21297 * 119.99608 * 2 1 4 4 N 1.34772 * 120.00047 * 179.97438 * 2 1 3 5 5 C 1.40145 * 120.00305 * 185.18147 * 4 2 1 6 6 C 1.38863 * 119.99435 * 212.91713 * 5 4 2 7 7 C 1.38037 * 120.01327 * 180.02562 * 6 5 4 8 8 C 1.38948 * 119.98764 * 359.97438 * 7 6 5 9 9 S 1.76206 * 120.00991 * 180.02562 * 8 7 6 10 10 C 1.81396 * 103.00017 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46923 * 180.02562 * 10 9 8 12 12 C 1.38634 * 119.74466 * 269.71978 * 11 10 9 13 13 C 1.37618 * 120.24293 * 179.71884 * 12 11 10 14 14 C 1.40715 * 119.74809 * 0.58084 * 13 12 11 15 15 C 1.41395 * 120.24461 * 179.67988 * 14 13 12 16 16 H 1.08004 * 119.99554 * 155.22480 * 15 14 13 17 17 C 1.39940 * 120.00332 * 335.21775 * 15 14 13 18 18 N 1.30826 * 119.99686 * 342.43725 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 162.43833 * 17 15 14 20 20 H 1.48500 * 109.46993 * 94.70194 * 19 17 15 21 21 H 1.48501 * 109.46978 * 214.70192 * 19 17 15 22 22 H 1.48499 * 109.47078 * 334.70072 * 19 17 15 23 23 C 1.40721 * 119.50854 * 359.69654 * 14 13 12 24 24 C 1.37617 * 119.74484 * 0.02562 * 23 14 13 25 25 C 1.38952 * 119.98034 * 0.28345 * 8 7 6 26 26 C 1.38038 * 119.98977 * 359.44143 * 25 8 7 27 27 H 1.09006 * 109.46727 * 270.00549 * 1 2 3 28 28 H 1.09005 * 109.47130 * 29.99734 * 1 2 3 29 29 H 1.08991 * 109.47299 * 150.00272 * 1 2 3 30 30 H 0.97000 * 119.99847 * 5.18408 * 4 2 1 31 31 H 1.07998 * 119.99194 * 359.97438 * 6 5 4 32 32 H 1.07996 * 120.00363 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46801 * 299.99649 * 10 9 8 34 34 H 1.09002 * 109.47445 * 59.99713 * 10 9 8 35 35 H 1.07999 * 119.87567 * 359.97438 * 12 11 10 36 36 H 1.07999 * 120.12651 * 180.27871 * 13 12 11 37 37 H 0.97004 * 120.00134 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.12713 * 179.97438 * 23 14 13 39 39 H 1.07992 * 119.87350 * 180.02562 * 24 23 14 40 40 H 1.07998 * 120.00349 * 179.71333 * 25 8 7 41 41 H 1.07994 * 119.99581 * 180.27357 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5781 -1.1696 0.1101 6 6 4.3230 -2.1502 -0.5316 7 6 5.6991 -2.1534 -0.4235 8 6 6.3390 -1.1748 0.3272 9 16 8.0957 -1.1778 0.4651 10 6 8.4246 0.2603 1.5206 11 6 9.9101 0.3963 1.7356 12 6 10.5097 -0.2360 2.8138 13 6 11.8662 -0.1235 3.0165 14 6 12.6429 0.6469 2.1315 15 6 14.0365 0.7752 2.3338 16 1 14.6847 1.0004 1.4998 17 6 14.5757 0.6105 3.6146 18 7 13.7994 0.6813 4.6652 19 14 16.4040 0.2897 3.8241 20 1 17.1066 1.5741 4.0724 21 1 16.6176 -0.6223 4.9765 22 1 16.9410 -0.3379 2.5900 23 6 12.0225 1.2890 1.0439 24 6 10.6653 1.1578 0.8573 25 6 5.5929 -0.1969 0.9736 26 6 4.2172 -0.1912 0.8603 27 1 -0.3633 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5137 30 1 1.6989 -2.0055 -0.0750 31 1 3.8255 -2.9110 -1.1148 32 1 6.2783 -2.9163 -0.9223 33 1 8.0439 1.1602 1.0375 34 1 7.9287 0.1265 2.4820 35 1 9.9107 -0.8225 3.4947 36 1 12.3321 -0.6206 3.8545 37 1 14.1731 0.5668 5.5530 38 1 12.6089 1.8831 0.3587 39 1 10.1871 1.6494 0.0230 40 1 6.0895 0.5612 1.5610 41 1 3.6375 0.5714 1.3590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342550936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:06 Heat of formation + Delta-G solvation = -1.983317 kcal Electronic energy + Delta-G solvation = -22866.188194 eV Core-core repulsion = 19415.187586 eV Total energy + Delta-G solvation = -3451.000609 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64345 -38.46496 -37.69103 -34.99435 -34.07864 -31.56783 -31.14864 -30.85737 -29.37580 -28.78824 -27.57911 -24.22611 -23.10124 -22.65531 -21.08522 -20.73289 -20.08993 -18.07319 -17.38630 -17.26679 -17.20256 -15.81455 -15.41855 -14.99704 -14.83871 -14.41122 -14.36645 -14.07661 -13.96894 -13.65394 -13.40655 -13.25694 -13.07039 -12.63269 -12.60656 -12.31727 -12.17346 -12.01937 -11.67657 -11.43900 -11.11545 -10.97567 -10.81341 -10.69840 -10.45665 -10.24533 -9.85182 -9.68264 -9.48159 -9.18886 -9.01998 -8.87892 -7.54860 -7.37721 -6.96335 -6.86571 -4.43988 1.08644 1.35053 1.75675 2.27827 2.66194 2.79222 2.92704 3.01067 3.03168 3.08097 3.30750 3.69029 3.86115 4.33675 4.55347 4.70060 4.80032 4.90489 4.92277 5.25460 5.32200 5.42677 5.46324 5.50039 5.57195 5.70129 5.88839 5.98412 6.09768 6.17959 6.26677 6.31805 6.34274 6.36708 6.87134 6.87942 6.97451 7.07945 7.17695 7.25986 7.52160 7.74498 7.79110 7.96174 8.00075 8.19421 8.53949 8.78757 8.86841 10.07030 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.036736 B = 0.001940 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.018263 B =14428.671941 C =14634.323724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.526 6.526 4 N -0.672 5.672 5 C 0.121 3.879 6 C -0.126 4.126 7 C -0.090 4.090 8 C -0.089 4.089 9 S -0.133 6.133 10 C -0.022 4.022 11 C -0.216 4.216 12 C -0.077 4.077 13 C -0.167 4.167 14 C 0.117 3.883 15 C -0.454 4.454 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.786 5.786 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.227 4.227 24 C -0.066 4.066 25 C -0.118 4.118 26 C -0.098 4.098 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.409 0.591 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.490 -6.071 -5.634 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.294 3.706 3 O -0.401 6.401 4 N -0.318 5.318 5 C 0.025 3.975 6 C -0.148 4.148 7 C -0.114 4.114 8 C -0.202 4.202 9 S 0.118 5.882 10 C -0.168 4.168 11 C -0.220 4.220 12 C -0.098 4.098 13 C -0.187 4.187 14 C 0.114 3.886 15 C -0.483 4.483 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.411 5.411 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.247 4.247 24 C -0.086 4.086 25 C -0.143 4.143 26 C -0.120 4.120 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.245 0.755 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.146 0.854 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.258 -6.043 -5.826 21.928 hybrid contribution -0.463 0.312 0.702 0.897 sum -20.721 -5.731 -5.124 22.101 Atomic orbital electron populations 1.21887 0.90828 1.05186 1.05104 1.21015 0.90856 0.83272 0.75440 1.90774 1.70497 1.31223 1.47587 1.43645 1.05381 1.09697 1.73110 1.17667 0.82362 0.98370 0.99108 1.20728 0.93612 0.99887 1.00569 1.20568 0.93350 0.98253 0.99253 1.22124 0.99068 0.98252 1.00802 1.86110 0.96915 1.40897 1.64266 1.22303 0.99056 0.95944 0.99546 1.18338 0.90802 1.11055 1.01796 1.20524 0.95178 0.98202 0.95851 1.21291 0.92416 1.02496 1.02496 1.17691 0.93216 0.87587 0.90103 1.19681 0.92777 1.41654 0.94212 0.90164 1.25969 1.00748 0.92148 0.95526 1.69824 1.37892 1.33796 0.99547 0.86278 0.82015 0.79223 0.79156 1.19466 1.19919 1.18289 1.20958 0.93609 1.06889 1.03241 1.20385 0.94115 0.97474 0.96613 1.21146 0.93664 0.98723 1.00800 1.20983 0.94257 0.98749 0.97994 0.88469 0.88535 0.90004 0.75503 0.85613 0.85230 0.90467 0.90414 0.89229 0.86281 0.90652 0.88713 0.89181 0.85372 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.31 36.01 0.37 -0.35 16 2 C 0.51 4.65 7.68 -10.99 -0.08 4.56 16 3 O -0.53 -7.42 14.75 5.54 0.08 -7.33 16 4 N -0.67 -5.46 5.35 -9.81 -0.05 -5.51 16 5 C 0.12 1.40 6.29 -83.59 -0.53 0.87 16 6 C -0.13 -1.36 9.95 -39.42 -0.39 -1.75 16 7 C -0.09 -1.15 9.78 -39.39 -0.39 -1.54 16 8 C -0.09 -1.34 6.11 -39.05 -0.24 -1.58 16 9 S -0.13 -2.28 21.90 -107.50 -2.35 -4.63 16 10 C -0.02 -0.39 4.45 36.01 0.16 -0.23 16 11 C -0.22 -4.64 5.16 -104.33 -0.54 -5.18 16 12 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 13 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 14 C 0.12 3.08 5.57 -106.82 -0.60 2.48 16 15 C -0.45 -11.78 9.05 -37.74 -0.34 -12.12 16 16 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 17 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.79 -19.81 10.96 55.55 0.61 -19.20 16 19 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 24 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 25 C -0.12 -1.73 9.36 -39.39 -0.37 -2.10 16 26 C -0.10 -1.34 8.65 -39.42 -0.34 -1.68 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.41 1.71 8.82 -40.82 -0.36 1.35 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.08 1.30 7.69 -51.92 -0.40 0.90 16 34 H 0.08 1.30 7.67 -51.92 -0.40 0.91 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 37 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.13 1.82 5.87 -52.49 -0.31 1.52 16 41 H 0.13 1.86 6.37 -52.49 -0.33 1.53 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -30.40 362.73 -11.19 -41.60 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.06 Total: 7.83 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -4.86 Total: -31.36 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.56 Total: -24.71 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.08 Total: -7.33 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.35 Total: -4.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.40 -11.19 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342550936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.612 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds