Wall clock time and date at job start Tue Mar 31 2020 15:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21297 * 119.99608 * 2 1 4 4 N 1.34772 * 120.00047 * 179.97438 * 2 1 3 5 5 C 1.40145 * 120.00305 * 185.18147 * 4 2 1 6 6 C 1.38863 * 119.99435 * 212.91713 * 5 4 2 7 7 C 1.38037 * 120.01327 * 180.02562 * 6 5 4 8 8 C 1.38948 * 119.98764 * 359.97438 * 7 6 5 9 9 S 1.76206 * 120.00991 * 180.02562 * 8 7 6 10 10 C 1.81396 * 103.00017 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46923 * 180.02562 * 10 9 8 12 12 C 1.38634 * 119.74466 * 269.71978 * 11 10 9 13 13 C 1.37618 * 120.24293 * 179.71884 * 12 11 10 14 14 C 1.40715 * 119.74809 * 0.58084 * 13 12 11 15 15 C 1.41395 * 120.24461 * 179.67988 * 14 13 12 16 16 H 1.08004 * 119.99554 * 155.22480 * 15 14 13 17 17 C 1.39940 * 120.00332 * 335.21775 * 15 14 13 18 18 N 1.30826 * 119.99686 * 342.43725 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 162.43833 * 17 15 14 20 20 H 1.48500 * 109.46993 * 94.70194 * 19 17 15 21 21 H 1.48501 * 109.46978 * 214.70192 * 19 17 15 22 22 H 1.48499 * 109.47078 * 334.70072 * 19 17 15 23 23 C 1.40721 * 119.50854 * 359.69654 * 14 13 12 24 24 C 1.37617 * 119.74484 * 0.02562 * 23 14 13 25 25 C 1.38952 * 119.98034 * 0.28345 * 8 7 6 26 26 C 1.38038 * 119.98977 * 359.44143 * 25 8 7 27 27 H 1.09006 * 109.46727 * 270.00549 * 1 2 3 28 28 H 1.09005 * 109.47130 * 29.99734 * 1 2 3 29 29 H 1.08991 * 109.47299 * 150.00272 * 1 2 3 30 30 H 0.97000 * 119.99847 * 5.18408 * 4 2 1 31 31 H 1.07998 * 119.99194 * 359.97438 * 6 5 4 32 32 H 1.07996 * 120.00363 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46801 * 299.99649 * 10 9 8 34 34 H 1.09002 * 109.47445 * 59.99713 * 10 9 8 35 35 H 1.07999 * 119.87567 * 359.97438 * 12 11 10 36 36 H 1.07999 * 120.12651 * 180.27871 * 13 12 11 37 37 H 0.97004 * 120.00134 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.12713 * 179.97438 * 23 14 13 39 39 H 1.07992 * 119.87350 * 180.02562 * 24 23 14 40 40 H 1.07998 * 120.00349 * 179.71333 * 25 8 7 41 41 H 1.07994 * 119.99581 * 180.27357 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5781 -1.1696 0.1101 6 6 4.3230 -2.1502 -0.5316 7 6 5.6991 -2.1534 -0.4235 8 6 6.3390 -1.1748 0.3272 9 16 8.0957 -1.1778 0.4651 10 6 8.4246 0.2603 1.5206 11 6 9.9101 0.3963 1.7356 12 6 10.5097 -0.2360 2.8138 13 6 11.8662 -0.1235 3.0165 14 6 12.6429 0.6469 2.1315 15 6 14.0365 0.7752 2.3338 16 1 14.6847 1.0004 1.4998 17 6 14.5757 0.6105 3.6146 18 7 13.7994 0.6813 4.6652 19 14 16.4040 0.2897 3.8241 20 1 17.1066 1.5741 4.0724 21 1 16.6176 -0.6223 4.9765 22 1 16.9410 -0.3379 2.5900 23 6 12.0225 1.2890 1.0439 24 6 10.6653 1.1578 0.8573 25 6 5.5929 -0.1969 0.9736 26 6 4.2172 -0.1912 0.8603 27 1 -0.3633 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5137 30 1 1.6989 -2.0055 -0.0750 31 1 3.8255 -2.9110 -1.1148 32 1 6.2783 -2.9163 -0.9223 33 1 8.0439 1.1602 1.0375 34 1 7.9287 0.1265 2.4820 35 1 9.9107 -0.8225 3.4947 36 1 12.3321 -0.6206 3.8545 37 1 14.1731 0.5668 5.5530 38 1 12.6089 1.8831 0.3587 39 1 10.1871 1.6494 0.0230 40 1 6.0895 0.5612 1.5610 41 1 3.6375 0.5714 1.3590 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342550936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:05 Heat of formation + Delta-G solvation = -17.389831 kcal Electronic energy + Delta-G solvation = -22866.856271 eV Core-core repulsion = 19415.187586 eV Total energy + Delta-G solvation = -3451.668685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46868 -39.52719 -39.40231 -35.91288 -35.83747 -33.18464 -32.01614 -31.84716 -31.23622 -29.60550 -29.20587 -25.90782 -24.14215 -23.62002 -22.95051 -21.95387 -21.44432 -19.26625 -18.99074 -18.36437 -17.93280 -17.21425 -16.58626 -16.22241 -16.16258 -15.77414 -15.71139 -15.41917 -15.39221 -14.72265 -14.44387 -14.32876 -14.25608 -13.87332 -13.74425 -13.69233 -13.41193 -13.22770 -13.05682 -12.80766 -12.70406 -12.48538 -12.35261 -12.09988 -11.70253 -11.58124 -11.33288 -11.30720 -11.00685 -10.88786 -10.01265 -9.88658 -9.41766 -9.23826 -8.68527 -8.19525 -6.37116 0.09064 0.32508 0.34614 1.08278 1.14031 1.38088 1.46497 1.53290 1.55262 1.70749 2.11606 2.19357 2.70608 2.72245 3.70811 3.72733 3.92009 3.94157 4.02611 4.04843 4.30602 4.40579 4.47765 4.50006 4.53657 4.55304 4.61707 4.66412 4.91412 5.00436 5.02528 5.10954 5.11689 5.25330 5.30137 5.32060 5.39338 5.40687 5.65205 5.88498 5.92600 6.05618 6.13473 6.32342 6.44786 6.64327 6.88863 6.97179 7.14156 8.28269 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.036736 B = 0.001940 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.018263 B =14428.671941 C =14634.323724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.582 6.582 4 N -0.659 5.659 5 C 0.127 3.873 6 C -0.114 4.114 7 C -0.091 4.091 8 C -0.107 4.107 9 S -0.150 6.150 10 C -0.017 4.017 11 C -0.204 4.204 12 C -0.083 4.083 13 C -0.190 4.190 14 C 0.085 3.915 15 C -0.494 4.494 16 H 0.078 0.922 17 C 0.035 3.965 18 N -0.820 5.820 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.259 1.259 23 C -0.243 4.243 24 C -0.070 4.070 25 C -0.129 4.129 26 C -0.115 4.115 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.432 0.568 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.322 -7.657 -6.738 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.291 3.709 3 O -0.461 6.461 4 N -0.306 5.306 5 C 0.030 3.970 6 C -0.136 4.136 7 C -0.115 4.115 8 C -0.220 4.220 9 S 0.098 5.902 10 C -0.164 4.164 11 C -0.208 4.208 12 C -0.103 4.103 13 C -0.210 4.210 14 C 0.082 3.918 15 C -0.523 4.523 16 H 0.096 0.904 17 C -0.181 4.181 18 N -0.445 5.445 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.182 1.182 23 C -0.262 4.262 24 C -0.090 4.090 25 C -0.153 4.153 26 C -0.137 4.137 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.272 0.728 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.136 -7.653 -6.930 25.335 hybrid contribution 0.035 0.762 0.944 1.214 sum -23.100 -6.891 -5.986 24.838 Atomic orbital electron populations 1.21924 0.86592 1.06828 1.06606 1.21992 0.92793 0.82429 0.73683 1.90761 1.71951 1.33250 1.50107 1.43640 1.04015 1.10826 1.72127 1.17856 0.84198 0.97371 0.97576 1.21086 0.92689 1.00076 0.99739 1.20849 0.94497 0.97707 0.98435 1.22021 0.97083 0.99911 1.02998 1.85973 0.99765 1.40059 1.64359 1.22170 0.96447 0.97148 1.00665 1.18655 0.92725 1.09004 1.00386 1.20745 0.94510 0.98375 0.96649 1.21261 0.93594 1.03498 1.02610 1.18032 0.93983 0.88573 0.91210 1.19904 0.93100 1.44139 0.95154 0.90386 1.26808 1.05413 0.91209 0.94646 1.69871 1.39984 1.34516 1.00159 0.85173 0.75983 0.79331 0.79133 1.18610 1.18914 1.18232 1.21158 0.94745 1.07175 1.03158 1.20676 0.93517 0.97421 0.97407 1.21153 0.94230 0.98813 1.01144 1.21004 0.93930 0.99635 0.99151 0.86829 0.88748 0.86521 0.72840 0.81449 0.83873 0.89348 0.89419 0.87560 0.87876 0.89919 0.88152 0.86690 0.85923 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.31 71.24 0.73 -0.06 16 2 C 0.50 8.02 7.68 87.66 0.67 8.70 16 3 O -0.58 -16.05 14.75 -3.08 -0.05 -16.09 16 4 N -0.66 -8.49 5.35 -303.33 -1.62 -10.11 16 5 C 0.13 2.61 6.29 38.11 0.24 2.84 16 6 C -0.11 -2.03 9.95 22.37 0.22 -1.81 16 7 C -0.09 -2.09 9.78 22.39 0.22 -1.87 16 8 C -0.11 -3.08 6.11 22.61 0.14 -2.94 16 9 S -0.15 -5.03 21.90 -56.49 -1.24 -6.26 16 10 C -0.02 -0.61 4.45 71.24 0.32 -0.30 16 11 C -0.20 -8.81 5.16 -19.67 -0.10 -8.91 16 12 C -0.08 -3.89 9.67 22.22 0.21 -3.68 16 13 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 14 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 15 C -0.49 -26.80 9.05 23.46 0.21 -26.59 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 17 C 0.03 1.76 5.14 85.26 0.44 2.20 16 18 N -0.82 -42.86 10.96 21.83 0.24 -42.62 16 19 Si 0.98 38.07 29.59 68.60 2.03 40.10 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 24 C -0.07 -3.15 9.67 22.22 0.21 -2.93 16 25 C -0.13 -3.70 9.36 22.39 0.21 -3.49 16 26 C -0.12 -3.06 8.65 22.37 0.19 -2.86 16 27 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.43 1.62 8.82 -92.71 -0.82 0.80 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.09 2.90 7.69 -2.39 -0.02 2.88 16 34 H 0.09 2.89 7.67 -2.39 -0.02 2.87 16 35 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.10 5.73 6.17 -2.91 -0.02 5.71 16 37 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 38 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.12 3.51 5.87 -2.91 -0.02 3.49 16 41 H 0.12 3.49 6.37 -2.91 -0.02 3.47 16 Total: -1.00 -70.19 362.73 3.84 -66.36 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.25 Total: 27.64 kcal Atomic # 6 Polarization: -63.23 SS G_CDS: 4.23 Total: -59.00 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -1.38 Total: -52.74 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -1.24 Total: -6.26 kcal Total: -70.19 3.84 -66.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342550936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.966 kcal (2) G-P(sol) polarization free energy of solvation -70.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds