Wall clock time and date at job start Tue Mar 31 2020 15:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47447 * 2 1 4 4 C 1.36903 * 119.99893 * 269.62743 * 3 2 1 5 5 H 1.08002 * 120.00183 * 180.84882 * 4 3 2 6 6 C 1.39014 * 120.00218 * 0.84033 * 4 3 2 7 7 N 1.31386 * 119.99740 * 33.04696 * 6 4 3 8 8 Si 1.86803 * 120.00374 * 213.04400 * 6 4 3 9 9 H 1.48494 * 109.47116 * 94.23588 * 8 6 4 10 10 H 1.48501 * 109.47031 * 214.23310 * 8 6 4 11 11 H 1.48500 * 109.46834 * 334.23540 * 8 6 4 12 12 C 1.34776 * 119.99817 * 89.62377 * 3 2 1 13 13 O 1.21641 * 120.00155 * 5.37266 * 12 3 2 14 14 C 1.47290 * 119.99330 * 185.37497 * 12 3 2 15 15 C 1.39789 * 120.22218 * 49.68452 * 14 12 3 16 16 C 1.37725 * 119.92824 * 179.97438 * 15 14 12 17 17 C 1.38671 * 120.36870 * 0.02562 * 16 15 14 18 18 C 1.37932 * 120.44711 * 359.97438 * 17 16 15 19 19 C 1.39006 * 120.06020 * 359.97321 * 18 17 16 20 20 S 1.76210 * 120.18187 * 180.02562 * 19 18 17 21 21 C 1.76206 * 102.99752 * 254.04358 * 20 19 18 22 22 C 1.38963 * 120.08138 * 5.17972 * 21 20 19 23 23 C 1.38081 * 119.92148 * 179.77289 * 22 21 20 24 24 C 1.38311 * 120.07620 * 0.48608 * 23 22 21 25 25 C 1.38305 * 120.15577 * 359.78949 * 24 23 22 26 26 C 1.38076 * 120.08244 * 359.95414 * 25 24 23 27 27 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46957 * 300.00175 * 1 2 3 29 29 H 1.08998 * 109.47201 * 59.99716 * 1 2 3 30 30 H 1.09003 * 109.46957 * 239.99825 * 2 1 3 31 31 H 1.08998 * 109.47201 * 120.00284 * 2 1 3 32 32 H 0.97006 * 120.00427 * 179.97438 * 7 6 4 33 33 H 1.08006 * 120.03896 * 0.25193 * 15 14 12 34 34 H 1.07995 * 119.82022 * 179.97438 * 16 15 14 35 35 H 1.08005 * 119.77775 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.96732 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.03793 * 0.02562 * 22 21 20 38 38 H 1.07994 * 119.96419 * 180.25272 * 23 22 21 39 39 H 1.08000 * 119.91932 * 179.77207 * 24 23 22 40 40 H 1.08000 * 119.95472 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.04275 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2538 2.0239 -1.1856 5 1 2.6269 3.0375 -1.1856 6 6 2.0129 1.3720 -2.3895 7 7 1.0318 0.5029 -2.4811 8 14 3.0838 1.7317 -3.8772 9 1 4.1836 0.7365 -3.9476 10 1 2.2614 1.6486 -5.1109 11 1 3.6577 3.0959 -3.7557 12 6 2.2358 2.0190 1.1672 13 8 2.1208 1.4188 2.2189 14 6 2.6125 3.4429 1.1691 15 6 1.8727 4.3675 0.4262 16 6 2.2300 5.6976 0.4328 17 6 3.3216 6.1266 1.1726 18 6 4.0624 5.2275 1.9111 19 6 3.7173 3.8810 1.9184 20 16 4.6610 2.7297 2.8612 21 6 5.5738 1.8621 1.6288 22 6 5.4999 2.2587 0.2990 23 6 6.2203 1.5794 -0.6634 24 6 7.0069 0.4992 -0.3066 25 6 7.0784 0.0982 1.0151 26 6 6.3649 0.7761 1.9836 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.8633 0.0482 -3.3212 33 1 1.0190 4.0400 -0.1487 34 1 1.6574 6.4103 -0.1421 35 1 3.5931 7.1720 1.1712 36 1 4.9113 5.5700 2.4841 37 1 4.8829 3.0998 0.0192 38 1 6.1665 1.8896 -1.6964 39 1 7.5664 -0.0326 -1.0619 40 1 7.6933 -0.7460 1.2901 41 1 6.4215 0.4626 3.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344184560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:29 Heat of formation + Delta-G solvation = 42.147243 kcal Electronic energy + Delta-G solvation = -26215.387250 eV Core-core repulsion = 22766.300286 eV Total energy + Delta-G solvation = -3449.086964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.44107 -38.40488 -37.57035 -35.04100 -31.72325 -31.29161 -31.00393 -30.52315 -30.16024 -29.24436 -25.02777 -23.62506 -22.76665 -22.23904 -21.94667 -21.42367 -19.30671 -17.97419 -17.38820 -16.44957 -16.10869 -15.37478 -15.01668 -14.79163 -14.51282 -14.39015 -14.16984 -13.75531 -13.32885 -13.28295 -13.09164 -12.78834 -12.57416 -12.45879 -12.33311 -11.94915 -11.69954 -11.33541 -11.22579 -11.15029 -10.82866 -10.81331 -10.66414 -10.50885 -10.42690 -9.97942 -9.71894 -9.41447 -8.94458 -8.61438 -8.57022 -8.53954 -8.27127 -7.94187 -6.71520 -6.58848 -3.86838 1.16784 1.59520 1.66406 1.80910 2.16612 2.98110 3.01682 3.14928 3.14993 3.70431 3.96759 4.14344 4.21828 4.65276 4.89928 5.15969 5.23214 5.32217 5.33867 5.46357 5.47327 5.78251 5.79952 5.84511 5.92878 6.06714 6.15407 6.31117 6.38030 6.45611 6.60157 6.67676 6.70632 6.71309 6.76605 6.77389 6.80371 6.91159 6.97721 7.17643 7.24046 7.30649 7.31770 7.58671 7.73940 8.32504 8.96211 9.43405 9.86950 10.40070 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.007260 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.213718 B = 3856.034135 C = 4683.307243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 N -0.416 5.416 4 C -0.342 4.342 5 H 0.104 0.896 6 C 0.050 3.950 7 N -0.833 5.833 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.471 3.529 13 O -0.584 6.584 14 C -0.028 4.028 15 C -0.089 4.089 16 C -0.105 4.105 17 C -0.132 4.132 18 C -0.079 4.079 19 C -0.118 4.118 20 S 0.006 5.994 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.095 4.095 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.106 4.106 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.270 0.730 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 5.318 1.841 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 N -0.132 5.132 4 C -0.469 4.469 5 H 0.122 0.878 6 C -0.157 4.157 7 N -0.469 5.469 8 Si 0.720 3.280 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.260 3.740 13 O -0.470 6.470 14 C -0.034 4.034 15 C -0.109 4.109 16 C -0.123 4.123 17 C -0.152 4.152 18 C -0.100 4.100 19 C -0.231 4.231 20 S 0.259 5.741 21 C -0.199 4.199 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.153 4.153 25 C -0.129 4.129 26 C -0.130 4.130 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.936 4.733 3.493 9.094 hybrid contribution 0.214 0.326 -2.540 2.570 sum 7.149 5.059 0.953 8.810 Atomic orbital electron populations 1.22042 0.96484 0.99741 1.01971 1.21194 0.94432 0.82877 1.00474 1.43705 1.53393 1.11574 1.04537 1.19698 1.43989 1.00741 0.82484 0.87824 1.25090 0.95310 0.96538 0.98784 1.70207 1.22802 1.26815 1.27054 0.86425 0.81166 0.79462 0.80949 1.19941 1.20984 1.19142 1.17578 0.86108 0.85902 0.84441 1.90695 1.58793 1.66686 1.30874 1.20488 0.93081 0.95910 0.93917 1.21508 1.00098 0.92274 0.97058 1.21217 0.96899 0.95739 0.98461 1.21107 0.96458 0.99253 0.98392 1.21268 0.99152 0.91618 0.97970 1.21865 0.99633 0.96754 1.04810 1.83694 1.44633 1.37789 1.08027 1.22021 1.00597 0.99877 0.97395 1.21170 0.99212 1.00809 0.91526 1.20988 0.96026 0.95547 0.98917 1.21055 1.00428 0.97760 0.96106 1.20921 0.99571 0.99383 0.93002 1.20603 0.98029 0.94840 0.99512 0.94638 0.95609 0.88880 0.89515 0.93717 0.91881 0.84299 0.85772 0.85913 0.85379 0.85950 0.86358 0.86501 0.86202 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.73 37.15 0.36 -2.92 16 2 C 0.13 3.22 5.39 -4.05 -0.02 3.20 16 3 N -0.42 -10.16 2.62 -116.08 -0.30 -10.46 16 4 C -0.34 -8.14 8.30 -15.00 -0.12 -8.26 16 5 H 0.10 2.41 5.46 -52.49 -0.29 2.13 16 6 C 0.05 1.18 4.79 -17.45 -0.08 1.09 16 7 N -0.83 -19.88 8.66 55.50 0.48 -19.40 16 8 Si 0.89 18.43 29.66 -169.99 -5.04 13.39 16 9 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 12 C 0.47 11.51 6.46 -12.58 -0.08 11.43 16 13 O -0.58 -15.74 15.31 5.24 0.08 -15.66 16 14 C -0.03 -0.59 4.04 -104.79 -0.42 -1.01 16 15 C -0.09 -1.67 7.54 -39.19 -0.30 -1.96 16 16 C -0.10 -1.58 10.02 -39.61 -0.40 -1.97 16 17 C -0.13 -1.84 10.03 -39.53 -0.40 -2.24 16 18 C -0.08 -1.24 9.79 -39.41 -0.39 -1.62 16 19 C -0.12 -2.26 4.09 -38.45 -0.16 -2.42 16 20 S 0.01 0.12 19.96 -107.50 -2.15 -2.03 16 21 C -0.09 -1.66 6.02 -39.04 -0.23 -1.89 16 22 C -0.10 -2.00 9.13 -39.37 -0.36 -2.36 16 23 C -0.09 -1.68 10.04 -39.61 -0.40 -2.08 16 24 C -0.13 -2.09 10.04 -39.53 -0.40 -2.48 16 25 C -0.11 -1.67 10.04 -39.62 -0.40 -2.07 16 26 C -0.11 -1.81 9.79 -39.37 -0.39 -2.19 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.24 6.15 -51.93 -0.32 1.92 16 30 H 0.09 2.16 6.00 -51.93 -0.31 1.85 16 31 H 0.04 1.11 7.36 -51.93 -0.38 0.73 16 32 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 33 H 0.14 2.70 7.40 -52.48 -0.39 2.31 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.12 2.49 5.89 -52.49 -0.31 2.18 16 38 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -27.97 352.05 -10.74 -38.71 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -4.94 Total: 9.92 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -4.18 Total: -19.76 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.18 Total: -29.87 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.04 Total: 13.39 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.15 Total: -2.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.97 -10.74 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.860 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds