Wall clock time and date at job start Tue Mar 31 2020 15:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47447 * 2 1 4 4 C 1.36903 * 119.99893 * 269.62743 * 3 2 1 5 5 H 1.08002 * 120.00183 * 180.84882 * 4 3 2 6 6 C 1.39014 * 120.00218 * 0.84033 * 4 3 2 7 7 N 1.31386 * 119.99740 * 33.04696 * 6 4 3 8 8 Si 1.86803 * 120.00374 * 213.04400 * 6 4 3 9 9 H 1.48494 * 109.47116 * 94.23588 * 8 6 4 10 10 H 1.48501 * 109.47031 * 214.23310 * 8 6 4 11 11 H 1.48500 * 109.46834 * 334.23540 * 8 6 4 12 12 C 1.34776 * 119.99817 * 89.62377 * 3 2 1 13 13 O 1.21641 * 120.00155 * 5.37266 * 12 3 2 14 14 C 1.47290 * 119.99330 * 185.37497 * 12 3 2 15 15 C 1.39789 * 120.22218 * 49.68452 * 14 12 3 16 16 C 1.37725 * 119.92824 * 179.97438 * 15 14 12 17 17 C 1.38671 * 120.36870 * 0.02562 * 16 15 14 18 18 C 1.37932 * 120.44711 * 359.97438 * 17 16 15 19 19 C 1.39006 * 120.06020 * 359.97321 * 18 17 16 20 20 S 1.76210 * 120.18187 * 180.02562 * 19 18 17 21 21 C 1.76206 * 102.99752 * 254.04358 * 20 19 18 22 22 C 1.38963 * 120.08138 * 5.17972 * 21 20 19 23 23 C 1.38081 * 119.92148 * 179.77289 * 22 21 20 24 24 C 1.38311 * 120.07620 * 0.48608 * 23 22 21 25 25 C 1.38305 * 120.15577 * 359.78949 * 24 23 22 26 26 C 1.38076 * 120.08244 * 359.95414 * 25 24 23 27 27 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46957 * 300.00175 * 1 2 3 29 29 H 1.08998 * 109.47201 * 59.99716 * 1 2 3 30 30 H 1.09003 * 109.46957 * 239.99825 * 2 1 3 31 31 H 1.08998 * 109.47201 * 120.00284 * 2 1 3 32 32 H 0.97006 * 120.00427 * 179.97438 * 7 6 4 33 33 H 1.08006 * 120.03896 * 0.25193 * 15 14 12 34 34 H 1.07995 * 119.82022 * 179.97438 * 16 15 14 35 35 H 1.08005 * 119.77775 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.96732 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.03793 * 0.02562 * 22 21 20 38 38 H 1.07994 * 119.96419 * 180.25272 * 23 22 21 39 39 H 1.08000 * 119.91932 * 179.77207 * 24 23 22 40 40 H 1.08000 * 119.95472 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.04275 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2538 2.0239 -1.1856 5 1 2.6269 3.0375 -1.1856 6 6 2.0129 1.3720 -2.3895 7 7 1.0318 0.5029 -2.4811 8 14 3.0838 1.7317 -3.8772 9 1 4.1836 0.7365 -3.9476 10 1 2.2614 1.6486 -5.1109 11 1 3.6577 3.0959 -3.7557 12 6 2.2358 2.0190 1.1672 13 8 2.1208 1.4188 2.2189 14 6 2.6125 3.4429 1.1691 15 6 1.8727 4.3675 0.4262 16 6 2.2300 5.6976 0.4328 17 6 3.3216 6.1266 1.1726 18 6 4.0624 5.2275 1.9111 19 6 3.7173 3.8810 1.9184 20 16 4.6610 2.7297 2.8612 21 6 5.5738 1.8621 1.6288 22 6 5.4999 2.2587 0.2990 23 6 6.2203 1.5794 -0.6634 24 6 7.0069 0.4992 -0.3066 25 6 7.0784 0.0982 1.0151 26 6 6.3649 0.7761 1.9836 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.8633 0.0482 -3.3212 33 1 1.0190 4.0400 -0.1487 34 1 1.6574 6.4103 -0.1421 35 1 3.5931 7.1720 1.1712 36 1 4.9113 5.5700 2.4841 37 1 4.8829 3.0998 0.0192 38 1 6.1665 1.8896 -1.6964 39 1 7.5664 -0.0326 -1.0619 40 1 7.6933 -0.7460 1.2901 41 1 6.4215 0.4626 3.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:28 Heat of formation + Delta-G solvation = 30.381573 kcal Electronic energy + Delta-G solvation = -26215.897448 eV Core-core repulsion = 22766.300286 eV Total energy + Delta-G solvation = -3449.597162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05279 -39.72239 -39.12204 -36.92828 -33.55499 -32.83389 -32.35089 -31.83537 -31.48421 -30.93905 -26.85352 -25.23809 -24.08845 -23.55157 -23.43260 -22.94814 -21.07722 -19.56215 -18.79091 -18.06371 -17.65545 -16.71460 -16.51417 -16.38888 -16.21693 -15.83268 -15.61079 -15.16459 -14.99576 -14.67829 -14.46161 -14.41010 -14.24952 -13.96302 -13.85710 -13.53312 -13.12410 -13.01049 -12.92411 -12.62483 -12.53270 -12.23554 -12.14402 -12.09555 -11.98690 -11.64430 -11.38397 -10.86332 -10.75560 -10.34076 -9.92667 -9.87593 -9.79276 -9.73300 -8.38909 -8.16403 -5.72597 -0.18776 0.25920 0.33951 0.48264 0.78841 1.36492 1.45702 1.53200 1.58660 2.05248 2.25164 2.73429 2.82589 2.92172 3.13824 3.93840 3.95530 4.06032 4.08348 4.16265 4.23900 4.40300 4.48410 4.53142 4.53284 4.61265 4.72974 4.76341 4.84528 4.84898 4.99762 5.08213 5.08894 5.30107 5.34377 5.38102 5.39305 5.42912 5.47836 5.48202 5.59315 5.73639 5.82420 5.92274 6.03724 6.47785 7.12664 7.58815 8.02722 8.61649 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.007260 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.213718 B = 3856.034135 C = 4683.307243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.136 3.864 3 N -0.423 5.423 4 C -0.352 4.352 5 H 0.106 0.894 6 C 0.017 3.983 7 N -0.854 5.854 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.260 1.260 12 C 0.466 3.534 13 O -0.623 6.623 14 C -0.063 4.063 15 C -0.105 4.105 16 C -0.094 4.094 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.128 4.128 20 S -0.023 6.023 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.103 4.103 26 C -0.119 4.119 27 H 0.055 0.945 28 H 0.012 0.988 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.273 0.727 33 H 0.121 0.879 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 6.986 0.715 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.013 3.987 3 N -0.138 5.138 4 C -0.479 4.479 5 H 0.123 0.877 6 C -0.188 4.188 7 N -0.490 5.490 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.184 1.184 12 C 0.256 3.744 13 O -0.513 6.513 14 C -0.068 4.068 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.241 4.241 20 S 0.229 5.771 21 C -0.218 4.218 22 C -0.143 4.143 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.123 4.123 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.172 0.828 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.645 6.414 2.349 11.018 hybrid contribution -0.306 -0.161 -2.165 2.193 sum 8.339 6.253 0.184 10.425 Atomic orbital electron populations 1.21875 0.95464 1.00698 1.00608 1.21107 0.95218 0.83307 0.99089 1.43834 1.53515 1.11414 1.05083 1.19816 1.44447 1.01169 0.82424 0.87669 1.25736 0.95774 0.96581 1.00728 1.70251 1.23432 1.27582 1.27779 0.85539 0.79412 0.79456 0.77978 1.20034 1.20822 1.18423 1.18116 0.85289 0.87314 0.83684 1.90635 1.60437 1.68140 1.32073 1.20279 0.95395 0.94225 0.96939 1.21469 0.99838 0.93896 0.97312 1.21616 0.97127 0.94471 0.98012 1.21653 0.94491 1.01156 0.95646 1.21665 0.99991 0.90238 0.98037 1.22024 0.99268 0.98082 1.04693 1.83557 1.45013 1.39148 1.09336 1.22150 1.01440 1.00940 0.97258 1.21102 0.99978 1.01127 0.92114 1.21228 0.96476 0.96343 0.99035 1.21463 0.99572 0.96865 0.97143 1.21360 0.98830 0.99667 0.92425 1.20943 0.98044 0.94535 1.00778 0.92565 0.96841 0.90018 0.90273 0.95348 0.91635 0.86102 0.82070 0.81007 0.82776 0.87636 0.85595 0.83256 0.82496 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 9.73 71.98 0.70 -5.32 16 2 C 0.14 6.86 5.39 86.38 0.47 7.33 16 3 N -0.42 -21.50 2.62 -639.42 -1.67 -23.17 16 4 C -0.35 -17.12 8.30 84.09 0.70 -16.42 16 5 H 0.11 5.01 5.46 -2.91 -0.02 4.99 16 6 C 0.02 0.82 4.79 84.95 0.41 1.23 16 7 N -0.85 -41.24 8.66 21.68 0.19 -41.06 16 8 Si 0.95 37.49 29.66 68.60 2.03 39.53 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 12 C 0.47 23.82 6.46 86.62 0.56 24.38 16 13 O -0.62 -35.49 15.31 -4.16 -0.06 -35.55 16 14 C -0.06 -2.72 4.04 -19.97 -0.08 -2.80 16 15 C -0.10 -3.93 7.54 22.52 0.17 -3.76 16 16 C -0.09 -2.57 10.02 22.25 0.22 -2.35 16 17 C -0.11 -2.62 10.03 22.30 0.22 -2.40 16 18 C -0.08 -2.29 9.79 22.38 0.22 -2.07 16 19 C -0.13 -4.94 4.09 23.00 0.09 -4.84 16 20 S -0.02 -0.89 19.96 -56.49 -1.13 -2.02 16 21 C -0.11 -4.12 6.02 22.62 0.14 -3.99 16 22 C -0.12 -4.68 9.13 22.41 0.20 -4.47 16 23 C -0.11 -3.85 10.04 22.25 0.22 -3.62 16 24 C -0.13 -3.81 10.04 22.30 0.22 -3.59 16 25 C -0.10 -2.95 10.04 22.25 0.22 -2.73 16 26 C -0.12 -4.03 9.79 22.41 0.22 -3.82 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 4.04 6.15 -2.39 -0.01 4.02 16 30 H 0.08 4.08 6.00 -2.39 -0.01 4.06 16 31 H 0.03 1.48 7.36 -2.39 -0.02 1.47 16 32 H 0.27 12.47 8.31 -92.70 -0.77 11.70 16 33 H 0.12 4.86 7.40 -2.91 -0.02 4.84 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 37 H 0.11 4.41 5.89 -2.91 -0.02 4.40 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -64.14 352.05 5.31 -58.83 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 1.05 Total: 32.69 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 4.91 Total: -29.25 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -1.49 Total: -64.23 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.06 Total: -35.55 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -1.13 Total: -2.02 kcal Total: -64.14 5.31 -58.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.210 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds