Wall clock time and date at job start Tue Mar 31 2020 15:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46910 * 2 1 4 4 S 1.81401 * 109.47665 * 239.99654 * 2 1 3 5 5 C 1.76202 * 102.99893 * 67.10339 * 4 2 1 6 6 C 1.38977 * 120.07891 * 269.61471 * 5 4 2 7 7 C 1.38079 * 119.91695 * 179.76702 * 6 5 4 8 8 C 1.38309 * 120.08052 * 0.48165 * 7 6 5 9 9 C 1.38301 * 120.15917 * 359.77157 * 8 7 6 10 10 C 1.38084 * 120.08212 * 359.97438 * 9 8 7 11 11 C 1.50709 * 109.46931 * 119.99377 * 2 1 3 12 12 O 1.21273 * 119.99535 * 99.99891 * 11 2 1 13 13 N 1.34775 * 120.00191 * 280.00610 * 11 2 1 14 14 C 1.39120 * 119.99925 * 184.63811 * 13 11 2 15 15 C 1.38649 * 120.28420 * 330.44679 * 14 13 11 16 16 C 1.38220 * 120.03432 * 180.29949 * 15 14 13 17 17 C 1.38871 * 120.61593 * 359.45231 * 16 15 14 18 18 C 1.36462 * 120.57418 * 0.54903 * 17 16 15 19 19 C 1.40732 * 119.94620 * 359.73309 * 18 17 16 20 20 C 1.41068 * 120.30228 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00001 * 149.40786 * 20 19 18 22 22 C 1.39954 * 120.00390 * 329.40865 * 20 19 18 23 23 N 1.30856 * 119.99353 * 347.14404 * 22 20 19 24 24 Si 1.86794 * 120.00427 * 167.14283 * 22 20 19 25 25 H 1.48500 * 109.47081 * 60.00096 * 24 22 20 26 26 H 1.48501 * 109.47350 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47457 * 300.00137 * 24 22 20 28 28 H 1.08990 * 109.46894 * 174.61565 * 1 2 3 29 29 H 1.09000 * 109.47438 * 294.62113 * 1 2 3 30 30 H 1.09001 * 109.46641 * 54.62164 * 1 2 3 31 31 H 1.07998 * 120.04122 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.96620 * 180.22836 * 7 6 5 33 33 H 1.07996 * 119.92191 * 179.74151 * 8 7 6 34 34 H 1.08000 * 119.96048 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.04179 * 179.97438 * 10 9 8 36 36 H 0.97006 * 119.99967 * 4.63082 * 13 11 2 37 37 H 1.07997 * 119.97829 * 0.02862 * 15 14 13 38 38 H 1.07999 * 119.69142 * 179.69713 * 16 15 14 39 39 H 1.07996 * 119.71405 * 180.30373 * 17 16 15 40 40 H 1.08001 * 120.02745 * 179.74895 * 18 17 16 41 41 H 0.97003 * 119.99722 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1348 -0.8552 -1.4810 5 6 1.6372 0.2162 -2.7884 6 6 0.3994 0.0448 -3.3965 7 6 0.0108 0.8894 -4.4174 8 6 0.8559 1.8987 -4.8417 9 6 2.0907 2.0689 -4.2424 10 6 2.4838 1.2314 -3.2173 11 6 2.0323 -0.7103 1.2306 12 8 2.4063 -1.8615 1.1560 13 7 2.0657 -0.0663 2.4140 14 6 2.6184 -0.6881 3.5291 15 6 2.5765 -2.0685 3.6524 16 6 3.1217 -2.6805 4.7653 17 6 3.7251 -1.9261 5.7630 18 6 3.7803 -0.5660 5.6672 19 6 3.2276 0.0825 4.5471 20 6 3.2810 1.4881 4.4402 21 1 3.3353 1.9540 3.4673 22 6 3.2637 2.2789 5.5947 23 7 2.9475 1.7467 6.7476 24 14 3.6918 4.0941 5.4900 25 1 2.7412 4.7749 4.5746 26 1 3.6006 4.7031 6.8414 27 1 5.0747 4.2475 4.9709 28 1 -0.3633 -1.0230 -0.0964 29 1 -0.3634 0.4281 0.9342 30 1 -0.3633 0.5950 -0.8379 31 1 -0.2592 -0.7458 -3.0687 32 1 -0.9525 0.7592 -4.8880 33 1 0.5511 2.5552 -5.6433 34 1 2.7482 2.8578 -4.5766 35 1 3.4483 1.3647 -2.7501 36 1 1.7045 0.8310 2.4883 37 1 2.1136 -2.6654 2.8805 38 1 3.0816 -3.7558 4.8580 39 1 4.1508 -2.4198 6.6240 40 1 4.2481 0.0124 6.4502 41 1 2.9358 2.2947 7.5479 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344325250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:01 Heat of formation + Delta-G solvation = -2.460058 kcal Electronic energy + Delta-G solvation = -24044.080316 eV Core-core repulsion = 20593.059035 eV Total energy + Delta-G solvation = -3451.021282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32824 -39.83812 -39.04230 -35.57173 -35.51791 -34.22565 -31.91881 -31.84119 -31.52434 -30.13746 -27.18267 -25.75902 -23.76647 -23.50527 -23.40161 -22.51010 -21.05766 -19.34320 -18.98422 -18.23443 -17.97505 -17.12180 -16.87657 -16.31168 -16.09736 -15.89774 -15.80775 -15.40045 -14.91676 -14.86509 -14.47680 -14.36512 -14.19877 -13.94737 -13.66236 -13.48815 -13.34274 -13.17027 -12.99801 -12.87401 -12.67847 -12.19284 -12.16591 -12.09049 -11.96575 -11.58560 -11.22158 -11.08008 -11.02036 -10.50917 -9.91927 -9.77434 -9.31552 -8.86893 -8.80767 -8.52414 -6.33422 -0.16433 0.42456 0.67625 0.80936 1.04545 1.41408 1.51252 1.53845 1.55785 1.76414 2.21504 2.31959 2.77513 2.78732 3.62702 3.70737 3.80635 3.95400 3.96503 4.08387 4.22139 4.50907 4.52287 4.54111 4.57138 4.61889 4.65494 4.76223 4.78957 5.02672 5.07287 5.08277 5.19792 5.27204 5.40395 5.42109 5.42204 5.51959 5.77321 5.80818 5.95870 6.08439 6.16639 6.24074 6.60740 6.68977 6.92137 6.98516 7.28766 8.37128 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.003308 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.919846 B = 8463.406654 C = 9996.824171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 H 0.120 0.880 4 S -0.128 6.128 5 C -0.140 4.140 6 C -0.079 4.079 7 C -0.130 4.130 8 C -0.093 4.093 9 C -0.131 4.131 10 C -0.088 4.088 11 C 0.518 3.482 12 O -0.555 6.555 13 N -0.627 5.627 14 C 0.012 3.988 15 C -0.109 4.109 16 C -0.226 4.226 17 C -0.119 4.119 18 C -0.168 4.168 19 C 0.077 3.923 20 C -0.494 4.494 21 H 0.082 0.918 22 C 0.040 3.960 23 N -0.828 5.828 24 Si 0.980 3.020 25 H -0.254 1.254 26 H -0.273 1.273 27 H -0.265 1.265 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 5.878 -18.617 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.219 4.219 3 H 0.138 0.862 4 S 0.106 5.894 5 C -0.252 4.252 6 C -0.099 4.099 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.151 4.151 10 C -0.108 4.108 11 C 0.305 3.695 12 O -0.435 6.435 13 N -0.270 5.270 14 C -0.083 4.083 15 C -0.129 4.129 16 C -0.246 4.246 17 C -0.138 4.138 18 C -0.188 4.188 19 C 0.073 3.927 20 C -0.523 4.523 21 H 0.100 0.900 22 C -0.175 4.175 23 N -0.454 5.454 24 Si 0.801 3.199 25 H -0.178 1.178 26 H -0.197 1.197 27 H -0.190 1.190 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.250 0.750 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.929 4.137 -18.458 19.823 hybrid contribution -0.332 1.972 0.685 2.114 sum -6.261 6.109 -17.773 19.809 Atomic orbital electron populations 1.21993 0.88962 1.04030 1.04266 1.23418 1.02285 1.03028 0.93218 0.86184 1.86308 1.76292 1.30763 0.96073 1.21921 0.99207 1.01864 1.02173 1.21786 0.94194 0.98574 0.95379 1.21565 1.01248 0.95247 0.96860 1.21749 0.93281 0.97159 0.98875 1.21526 0.97734 0.99758 0.96094 1.21789 0.99026 0.93290 0.96726 1.20249 0.78332 0.86780 0.84154 1.90626 1.48932 1.18342 1.85555 1.42749 1.57764 1.19482 1.06971 1.17926 1.06291 0.91940 0.92145 1.21020 1.00812 0.93388 0.97692 1.20662 1.08695 0.98807 0.96416 1.20730 1.00415 0.94252 0.98378 1.20881 1.04203 0.93518 1.00199 1.17714 0.89484 0.93967 0.91529 1.19501 1.47524 0.90929 0.94396 0.89989 1.26666 0.91476 1.05358 0.94037 1.69868 1.34588 1.40209 1.00757 0.85280 0.79821 0.76212 0.78614 1.17755 1.19728 1.18998 0.91249 0.90456 0.89353 0.84685 0.82925 0.82717 0.83394 0.85496 0.74975 0.86577 0.86760 0.86935 0.87737 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.04 71.98 0.65 -2.42 16 2 C -0.09 -2.56 3.14 29.85 0.09 -2.46 16 3 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 4 S -0.13 -3.80 20.34 -56.49 -1.15 -4.95 16 5 C -0.14 -3.21 5.35 22.62 0.12 -3.09 16 6 C -0.08 -1.46 9.07 22.41 0.20 -1.26 16 7 C -0.13 -1.76 10.04 22.25 0.22 -1.53 16 8 C -0.09 -1.14 10.04 22.30 0.22 -0.92 16 9 C -0.13 -1.97 10.04 22.25 0.22 -1.74 16 10 C -0.09 -1.79 9.79 22.41 0.22 -1.57 16 11 C 0.52 20.06 6.87 87.66 0.60 20.67 16 12 O -0.56 -25.53 13.15 -3.01 -0.04 -25.57 16 13 N -0.63 -25.78 5.02 -302.28 -1.52 -27.30 16 14 C 0.01 0.58 6.43 38.88 0.25 0.83 16 15 C -0.11 -5.39 8.74 22.36 0.20 -5.19 16 16 C -0.23 -10.67 10.04 22.42 0.22 -10.44 16 17 C -0.12 -5.71 9.97 22.01 0.22 -5.49 16 18 C -0.17 -8.83 8.59 22.46 0.19 -8.64 16 19 C 0.08 4.04 5.53 -21.18 -0.12 3.92 16 20 C -0.49 -24.68 8.28 23.38 0.19 -24.49 16 21 H 0.08 3.83 7.40 -2.91 -0.02 3.81 16 22 C 0.04 1.88 5.20 85.25 0.44 2.33 16 23 N -0.83 -41.62 11.09 21.83 0.24 -41.38 16 24 Si 0.98 35.96 29.58 68.60 2.03 37.99 16 25 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 27 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.65 7.18 -2.39 -0.02 1.63 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.41 15.12 7.82 -92.70 -0.73 14.39 16 37 H 0.12 5.74 5.80 -2.91 -0.02 5.72 16 38 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.10 5.66 6.44 -2.91 -0.02 5.64 16 41 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 Total: -1.00 -64.92 360.40 4.06 -60.86 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.33 Total: 41.85 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 4.16 Total: -41.50 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.28 Total: -68.68 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -1.15 Total: -4.95 kcal Total: -64.92 4.06 -60.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344325250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.397 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds