Wall clock time and date at job start Tue Mar 31 2020 15:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21229 * 120.00036 * 2 1 4 4 C 1.47391 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.39899 * 120.00273 * 180.02562 * 4 2 1 6 6 C 1.37650 * 120.04321 * 179.97438 * 5 4 2 7 7 C 1.39686 * 120.05925 * 0.02562 * 6 5 4 8 8 C 1.47854 * 119.99116 * 180.02562 * 7 6 5 9 9 O 1.21553 * 119.99587 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00348 * 359.97438 * 8 7 6 11 11 C 1.38974 * 119.99983 * 175.80625 * 10 8 7 12 12 C 1.38697 * 120.28818 * 34.55806 * 11 10 8 13 13 C 1.38193 * 120.02915 * 180.02562 * 12 11 10 14 14 C 1.38896 * 120.62320 * 359.97438 * 13 12 11 15 15 C 1.36445 * 120.58453 * 0.02566 * 14 13 12 16 16 C 1.40745 * 119.94839 * 359.67699 * 15 14 13 17 17 C 1.41038 * 120.30818 * 180.29920 * 16 15 14 18 18 H 1.07999 * 119.99975 * 214.97086 * 17 16 15 19 19 C 1.39987 * 119.99627 * 34.96639 * 17 16 15 20 20 N 1.30837 * 119.99653 * 355.68534 * 19 17 16 21 21 Si 1.86799 * 119.99917 * 175.67732 * 19 17 16 22 22 H 1.48508 * 109.46626 * 60.00253 * 21 19 17 23 23 H 1.48495 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47382 * 300.00770 * 21 19 17 25 25 C 1.39830 * 120.00991 * 359.97438 * 7 6 5 26 26 F 1.35094 * 120.02020 * 179.97438 * 25 7 6 27 27 C 1.38132 * 119.94920 * 0.24511 * 25 7 6 28 28 H 1.09000 * 109.47129 * 270.00107 * 1 2 3 29 29 H 1.09002 * 109.47149 * 30.00016 * 1 2 3 30 30 H 1.09003 * 109.46992 * 150.00158 * 1 2 3 31 31 H 1.07999 * 119.97483 * 359.95490 * 5 4 2 32 32 H 1.08001 * 119.96614 * 179.97438 * 6 5 4 33 33 H 0.97005 * 120.00093 * 355.80797 * 10 8 7 34 34 H 1.08000 * 119.98547 * 0.02562 * 12 11 10 35 35 H 1.08000 * 119.68956 * 179.97438 * 13 12 11 36 36 H 1.08000 * 119.70258 * 180.02562 * 14 13 12 37 37 H 1.07999 * 120.02419 * 179.97438 * 15 14 13 38 38 H 0.97008 * 119.99342 * 180.02562 * 20 19 17 39 39 H 1.07997 * 120.02335 * 179.72084 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2440 -1.2764 0.0006 5 6 3.6430 -1.2765 0.0011 6 6 4.3321 -2.4680 0.0022 7 6 3.6358 -3.6790 0.0022 8 6 4.3775 -4.9580 0.0039 9 8 3.7717 -6.0118 0.0044 10 7 5.7252 -4.9555 0.0049 11 6 6.4223 -6.1545 0.0946 12 6 5.9204 -7.3016 -0.5020 13 6 6.6177 -8.4911 -0.4090 14 6 7.8231 -8.5528 0.2783 15 6 8.3400 -7.4397 0.8746 16 6 7.6533 -6.2141 0.7899 17 6 8.1838 -5.0575 1.3981 18 1 7.5214 -4.3255 1.8361 19 6 9.5689 -4.8583 1.4339 20 7 10.3748 -5.7833 0.9794 21 14 10.2666 -3.2716 2.1305 22 1 9.8464 -3.1262 3.5474 23 1 11.7492 -3.3073 2.0545 24 1 9.7587 -2.1197 1.3429 25 6 2.2375 -3.6817 0.0016 26 9 1.5639 -4.8527 0.0011 27 6 1.5456 -2.4862 -0.0040 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.1826 -0.3409 0.0004 32 1 5.4121 -2.4666 0.0022 33 1 6.2088 -4.1168 -0.0568 34 1 4.9843 -7.2653 -1.0393 35 1 6.2217 -9.3812 -0.8753 36 1 8.3559 -9.4901 0.3413 37 1 9.2778 -7.4981 1.4071 38 1 11.3347 -5.6454 1.0046 39 1 0.4656 -2.4869 -0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344335543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:46 Heat of formation + Delta-G solvation = -65.804626 kcal Electronic energy + Delta-G solvation = -26384.739448 eV Core-core repulsion = 22364.758164 eV Total energy + Delta-G solvation = -4019.981284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.88316 -40.43982 -39.66362 -38.11456 -37.06871 -34.01382 -33.69232 -32.55754 -30.81852 -30.01874 -29.63587 -28.32285 -25.50917 -24.88269 -22.90942 -21.88257 -20.98973 -20.48192 -19.56580 -18.20335 -17.40960 -17.01517 -16.86831 -16.19965 -15.84080 -15.63056 -15.26354 -15.24692 -14.93335 -14.85814 -14.43042 -14.28043 -13.97433 -13.30579 -13.10501 -12.84451 -12.74030 -12.60584 -12.52455 -12.33034 -12.18812 -11.85706 -11.74601 -11.29403 -11.22154 -11.03027 -10.53997 -10.24691 -10.15074 -9.86321 -9.45499 -9.43100 -9.28052 -9.00860 -8.96650 -7.37209 -7.03747 -6.69318 -4.51993 -0.02005 0.88615 1.79636 2.60187 2.84092 3.00420 3.01360 3.12273 3.14503 3.48137 3.60723 3.77369 3.85270 4.01160 4.27820 4.59043 4.63594 4.69132 4.81662 4.90309 4.99797 5.04922 5.28816 5.50585 5.54350 5.59864 5.74544 5.80490 5.96391 6.27513 6.43456 6.46005 6.51710 6.85859 6.98975 7.08654 7.12224 7.20407 7.58749 7.64490 7.89142 8.02979 8.04122 8.29989 8.48571 8.70585 8.76973 8.91250 10.15914 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.003722 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.771862 B = 7520.106734 C = 9596.236055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.450 6.450 4 C -0.131 4.131 5 C -0.079 4.079 6 C -0.072 4.072 7 C -0.126 4.126 8 C 0.532 3.468 9 O -0.519 6.519 10 N -0.623 5.623 11 C 0.017 3.983 12 C -0.090 4.090 13 C -0.216 4.216 14 C -0.117 4.117 15 C -0.139 4.139 16 C 0.099 3.901 17 C -0.472 4.472 18 H 0.074 0.926 19 C 0.075 3.925 20 N -0.805 5.805 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 C 0.144 3.856 26 F -0.110 7.110 27 C -0.121 4.121 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.280 0.720 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.867 10.129 -1.840 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.275 3.725 3 O -0.325 6.325 4 C -0.132 4.132 5 C -0.098 4.098 6 C -0.090 4.090 7 C -0.131 4.131 8 C 0.319 3.681 9 O -0.397 6.397 10 N -0.266 5.266 11 C -0.077 4.077 12 C -0.110 4.110 13 C -0.236 4.236 14 C -0.136 4.136 15 C -0.159 4.159 16 C 0.096 3.904 17 C -0.502 4.502 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.431 5.431 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 C 0.123 3.877 26 F -0.088 7.088 27 C -0.140 4.140 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.240 0.760 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.742 9.860 -1.861 16.218 hybrid contribution 0.571 0.743 0.276 0.977 sum -12.171 10.603 -1.586 16.219 Atomic orbital electron populations 1.22261 0.93290 1.05222 1.05118 1.22523 0.91805 0.87192 0.70936 1.90556 1.72140 1.34024 1.35806 1.20454 0.94542 0.94259 1.03943 1.21397 0.92922 0.98997 0.96450 1.21358 1.01067 0.90407 0.96210 1.20569 0.92788 0.95468 1.04232 1.18011 0.82861 0.87935 0.79319 1.90799 1.68078 1.31555 1.49259 1.42724 1.04662 1.09827 1.69347 1.17795 0.98058 0.85173 1.06641 1.20675 0.99024 0.92318 0.99009 1.20387 0.97981 0.96707 1.08480 1.20571 0.95754 0.97700 0.99556 1.21187 1.01485 0.90741 1.02504 1.17453 0.89863 0.93461 0.89632 1.19273 0.91628 1.05248 1.34096 0.90750 1.25858 0.97120 0.98045 0.93163 1.69746 1.04977 1.32694 1.35712 0.86294 0.78139 0.81630 0.80217 1.18997 1.20288 1.19008 1.17515 0.88685 0.81914 0.99539 1.91622 1.79331 1.45053 1.92837 1.21378 1.01140 0.89977 1.01545 0.88094 0.89106 0.89271 0.83628 0.83508 0.76039 0.87155 0.89015 0.89182 0.85086 0.90867 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 9.75 36.00 0.35 -0.72 16 2 C 0.40 3.64 7.23 -30.59 -0.22 3.42 16 3 O -0.45 -5.55 17.08 5.60 0.10 -5.46 16 4 C -0.13 -1.30 5.87 -105.01 -0.62 -1.92 16 5 C -0.08 -0.85 9.58 -39.17 -0.38 -1.23 16 6 C -0.07 -0.87 9.52 -39.26 -0.37 -1.24 16 7 C -0.13 -1.89 5.88 -104.83 -0.62 -2.51 16 8 C 0.53 10.29 7.61 -12.33 -0.09 10.19 16 9 O -0.52 -11.72 12.72 5.32 0.07 -11.66 16 10 N -0.62 -12.48 4.90 -10.33 -0.05 -12.53 16 11 C 0.02 0.40 6.33 -83.21 -0.53 -0.13 16 12 C -0.09 -2.15 8.68 -39.43 -0.34 -2.49 16 13 C -0.22 -4.96 10.04 -39.35 -0.39 -5.35 16 14 C -0.12 -2.73 9.97 -39.98 -0.40 -3.12 16 15 C -0.14 -3.51 8.61 -39.28 -0.34 -3.85 16 16 C 0.10 2.52 5.56 -106.64 -0.59 1.92 16 17 C -0.47 -11.48 8.22 -37.87 -0.31 -11.79 16 18 H 0.07 1.71 7.63 -52.49 -0.40 1.31 16 19 C 0.07 1.75 5.42 -17.32 -0.09 1.66 16 20 N -0.80 -19.72 10.62 55.55 0.59 -19.13 16 21 Si 0.91 17.57 29.56 -169.99 -5.03 12.55 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 25 C 0.14 1.97 7.27 -39.03 -0.28 1.69 16 26 F -0.11 -1.76 15.52 2.25 0.03 -1.72 16 27 C -0.12 -1.20 9.33 -39.08 -0.36 -1.56 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.32 6.45 -51.93 -0.33 -0.01 16 31 H 0.15 1.41 7.63 -52.49 -0.40 1.01 16 32 H 0.15 1.60 6.39 -52.49 -0.34 1.26 16 33 H 0.40 7.06 6.12 -40.82 -0.25 6.81 16 34 H 0.11 2.60 6.19 -52.49 -0.33 2.28 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.13 3.40 6.16 -52.49 -0.32 3.08 16 38 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 39 H 0.15 0.98 6.33 -52.49 -0.33 0.65 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -30.49 340.22 -8.28 -38.77 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -3.53 Total: 11.10 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -5.59 Total: -17.04 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.54 Total: -31.66 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.16 Total: -17.11 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.49 -8.28 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds