Wall clock time and date at job start Tue Mar 31 2020 15:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21229 * 120.00036 * 2 1 4 4 C 1.47391 * 120.00144 * 179.97438 * 2 1 3 5 5 C 1.39899 * 120.00273 * 180.02562 * 4 2 1 6 6 C 1.37650 * 120.04321 * 179.97438 * 5 4 2 7 7 C 1.39686 * 120.05925 * 0.02562 * 6 5 4 8 8 C 1.47854 * 119.99116 * 180.02562 * 7 6 5 9 9 O 1.21553 * 119.99587 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00348 * 359.97438 * 8 7 6 11 11 C 1.38974 * 119.99983 * 175.80625 * 10 8 7 12 12 C 1.38697 * 120.28818 * 34.55806 * 11 10 8 13 13 C 1.38193 * 120.02915 * 180.02562 * 12 11 10 14 14 C 1.38896 * 120.62320 * 359.97438 * 13 12 11 15 15 C 1.36445 * 120.58453 * 0.02566 * 14 13 12 16 16 C 1.40745 * 119.94839 * 359.67699 * 15 14 13 17 17 C 1.41038 * 120.30818 * 180.29920 * 16 15 14 18 18 H 1.07999 * 119.99975 * 214.97086 * 17 16 15 19 19 C 1.39987 * 119.99627 * 34.96639 * 17 16 15 20 20 N 1.30837 * 119.99653 * 355.68534 * 19 17 16 21 21 Si 1.86799 * 119.99917 * 175.67732 * 19 17 16 22 22 H 1.48508 * 109.46626 * 60.00253 * 21 19 17 23 23 H 1.48495 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47382 * 300.00770 * 21 19 17 25 25 C 1.39830 * 120.00991 * 359.97438 * 7 6 5 26 26 F 1.35094 * 120.02020 * 179.97438 * 25 7 6 27 27 C 1.38132 * 119.94920 * 0.24511 * 25 7 6 28 28 H 1.09000 * 109.47129 * 270.00107 * 1 2 3 29 29 H 1.09002 * 109.47149 * 30.00016 * 1 2 3 30 30 H 1.09003 * 109.46992 * 150.00158 * 1 2 3 31 31 H 1.07999 * 119.97483 * 359.95490 * 5 4 2 32 32 H 1.08001 * 119.96614 * 179.97438 * 6 5 4 33 33 H 0.97005 * 120.00093 * 355.80797 * 10 8 7 34 34 H 1.08000 * 119.98547 * 0.02562 * 12 11 10 35 35 H 1.08000 * 119.68956 * 179.97438 * 13 12 11 36 36 H 1.08000 * 119.70258 * 180.02562 * 14 13 12 37 37 H 1.07999 * 120.02419 * 179.97438 * 15 14 13 38 38 H 0.97008 * 119.99342 * 180.02562 * 20 19 17 39 39 H 1.07997 * 120.02335 * 179.72084 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2440 -1.2764 0.0006 5 6 3.6430 -1.2765 0.0011 6 6 4.3321 -2.4680 0.0022 7 6 3.6358 -3.6790 0.0022 8 6 4.3775 -4.9580 0.0039 9 8 3.7717 -6.0118 0.0044 10 7 5.7252 -4.9555 0.0049 11 6 6.4223 -6.1545 0.0946 12 6 5.9204 -7.3016 -0.5020 13 6 6.6177 -8.4911 -0.4090 14 6 7.8231 -8.5528 0.2783 15 6 8.3400 -7.4397 0.8746 16 6 7.6533 -6.2141 0.7899 17 6 8.1838 -5.0575 1.3981 18 1 7.5214 -4.3255 1.8361 19 6 9.5689 -4.8583 1.4339 20 7 10.3748 -5.7833 0.9794 21 14 10.2666 -3.2716 2.1305 22 1 9.8464 -3.1262 3.5474 23 1 11.7492 -3.3073 2.0545 24 1 9.7587 -2.1197 1.3429 25 6 2.2375 -3.6817 0.0016 26 9 1.5639 -4.8527 0.0011 27 6 1.5456 -2.4862 -0.0040 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.1826 -0.3409 0.0004 32 1 5.4121 -2.4666 0.0022 33 1 6.2088 -4.1168 -0.0568 34 1 4.9843 -7.2653 -1.0393 35 1 6.2217 -9.3812 -0.8753 36 1 8.3559 -9.4901 0.3413 37 1 9.2778 -7.4981 1.4071 38 1 11.3347 -5.6454 1.0046 39 1 0.4656 -2.4869 -0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344335543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:46 Heat of formation + Delta-G solvation = -82.096962 kcal Electronic energy + Delta-G solvation = -26385.445937 eV Core-core repulsion = 22364.758164 eV Total energy + Delta-G solvation = -4020.687773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.00500 -41.62400 -40.85351 -39.35306 -38.59340 -35.66105 -35.50133 -33.51268 -31.78466 -31.51820 -30.85426 -29.83152 -27.19980 -26.06053 -24.01617 -23.35848 -22.63822 -21.65797 -20.91537 -19.56634 -19.04948 -18.23286 -18.07537 -17.42096 -17.02390 -16.85823 -16.74736 -16.21388 -16.04968 -15.94730 -15.83565 -15.67482 -15.17123 -14.78391 -14.47471 -14.36939 -14.22519 -13.66318 -13.62874 -13.38079 -13.08491 -12.99531 -12.96029 -12.83944 -12.75386 -12.63656 -12.14924 -12.00747 -11.64533 -11.13493 -11.04051 -10.93796 -10.66956 -10.41042 -9.99828 -9.26520 -8.84329 -8.47380 -6.39011 -0.98503 -0.03155 0.74118 1.00520 1.12045 1.42878 1.52732 1.54278 1.87725 2.16132 2.23127 2.54407 2.76093 2.79838 3.07716 3.42061 3.53790 3.67605 3.81768 3.95207 4.13962 4.32734 4.47050 4.55029 4.59846 4.65374 4.71754 4.74712 4.82173 4.88779 5.00275 5.08133 5.17407 5.25604 5.31079 5.39880 5.50279 5.75695 5.82694 6.09524 6.15328 6.23031 6.39067 6.57718 6.67606 6.92506 6.96691 7.22729 8.40321 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.003722 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.771862 B = 7520.106734 C = 9596.236055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.404 3.596 3 O -0.485 6.485 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.067 4.067 7 C -0.150 4.150 8 C 0.532 3.468 9 O -0.558 6.558 10 N -0.623 5.623 11 C 0.012 3.988 12 C -0.106 4.106 13 C -0.219 4.219 14 C -0.121 4.121 15 C -0.163 4.163 16 C 0.072 3.928 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.835 5.835 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.252 1.252 25 C 0.126 3.874 26 F -0.128 7.128 27 C -0.096 4.096 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.413 0.587 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.285 0.715 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 12.644 -1.737 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.283 3.717 3 O -0.362 6.362 4 C -0.124 4.124 5 C -0.096 4.096 6 C -0.085 4.085 7 C -0.154 4.154 8 C 0.321 3.679 9 O -0.439 6.439 10 N -0.267 5.267 11 C -0.082 4.082 12 C -0.126 4.126 13 C -0.239 4.239 14 C -0.139 4.139 15 C -0.183 4.183 16 C 0.068 3.932 17 C -0.522 4.522 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.462 5.462 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.175 1.175 25 C 0.105 3.895 26 F -0.107 7.107 27 C -0.114 4.114 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.251 0.749 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.370 12.384 -1.768 19.052 hybrid contribution 0.981 -0.006 0.216 1.005 sum -13.389 12.378 -1.552 18.300 Atomic orbital electron populations 1.22338 0.89685 1.06732 1.06736 1.23004 0.93502 0.85822 0.69353 1.90564 1.73170 1.34904 1.37541 1.20784 0.94407 0.95124 1.02121 1.21598 0.93672 0.98743 0.95615 1.21397 1.01486 0.89875 0.95765 1.20291 0.93324 0.94006 1.07819 1.18648 0.82399 0.89228 0.77581 1.90759 1.68671 1.33524 1.50898 1.42694 1.05143 1.09168 1.69656 1.17938 0.97896 0.86537 1.05823 1.20839 0.99173 0.93009 0.99555 1.20694 0.97717 0.97390 1.08091 1.20805 0.95967 0.98183 0.98988 1.21219 1.01583 0.91755 1.03784 1.17789 0.90746 0.94068 0.90605 1.19500 0.92572 1.05332 1.34786 0.90102 1.26722 0.96958 1.01247 0.92946 1.69832 1.05460 1.34560 1.36358 0.85218 0.77316 0.77649 0.79398 1.18854 1.19942 1.17538 1.17842 0.88329 0.82551 1.00749 1.91576 1.79531 1.46393 1.93166 1.21665 1.02907 0.87996 0.98841 0.86143 0.88408 0.87036 0.82369 0.82773 0.74866 0.87401 0.86553 0.86783 0.86438 0.90380 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 9.75 71.24 0.69 -0.49 16 2 C 0.40 5.98 7.23 28.10 0.20 6.18 16 3 O -0.48 -10.73 17.08 -2.87 -0.05 -10.78 16 4 C -0.12 -2.07 5.87 -20.11 -0.12 -2.19 16 5 C -0.08 -1.51 9.58 22.53 0.22 -1.30 16 6 C -0.07 -1.55 9.52 22.48 0.21 -1.34 16 7 C -0.15 -4.47 5.88 -20.00 -0.12 -4.59 16 8 C 0.53 21.14 7.61 86.79 0.66 21.80 16 9 O -0.56 -26.12 12.72 -3.88 -0.05 -26.17 16 10 N -0.62 -25.67 4.90 -304.87 -1.49 -27.16 16 11 C 0.01 0.61 6.33 38.93 0.25 0.86 16 12 C -0.11 -5.17 8.68 22.37 0.19 -4.97 16 13 C -0.22 -10.18 10.04 22.42 0.22 -9.96 16 14 C -0.12 -5.72 9.97 22.01 0.22 -5.50 16 15 C -0.16 -8.52 8.61 22.46 0.19 -8.33 16 16 C 0.07 3.74 5.56 -21.17 -0.12 3.62 16 17 C -0.49 -24.39 8.22 23.38 0.19 -24.20 16 18 H 0.08 3.76 7.63 -2.91 -0.02 3.74 16 19 C 0.03 1.64 5.42 85.26 0.46 2.11 16 20 N -0.84 -41.70 10.62 21.84 0.23 -41.46 16 21 Si 0.98 35.60 29.56 68.60 2.03 37.62 16 22 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 25 C 0.13 3.31 7.27 22.63 0.16 3.47 16 26 F -0.13 -4.07 15.52 44.97 0.70 -3.37 16 27 C -0.10 -1.58 9.33 22.60 0.21 -1.37 16 28 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.19 6.45 -2.39 -0.02 0.18 16 31 H 0.16 2.70 7.63 -2.91 -0.02 2.68 16 32 H 0.15 3.25 6.39 -2.91 -0.02 3.23 16 33 H 0.41 14.80 6.12 -92.70 -0.57 14.23 16 34 H 0.11 5.27 6.19 -2.91 -0.02 5.25 16 35 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.12 6.36 6.16 -2.91 -0.02 6.34 16 38 H 0.29 13.06 8.30 -92.70 -0.77 12.29 16 39 H 0.19 1.53 6.33 -2.91 -0.02 1.51 16 Total: -1.00 -69.05 340.22 5.67 -63.38 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.57 Total: 34.14 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.74 Total: -26.20 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.26 Total: -68.63 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.10 Total: -36.95 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.70 Total: -3.37 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.62 kcal Total: -69.05 5.67 -63.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.717 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds