Wall clock time and date at job start Tue Mar 31 2020 15:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76194 * 102.99922 * 2 1 4 4 C 1.38999 * 120.08355 * 0.28673 * 3 2 1 5 5 C 1.38063 * 119.92088 * 180.30016 * 4 3 2 6 6 C 1.38322 * 120.07609 * 359.70663 * 5 4 3 7 7 C 1.38271 * 120.16767 * 359.97438 * 6 5 4 8 8 C 1.38109 * 120.07666 * 0.04545 * 7 6 5 9 9 C 1.50704 * 120.03736 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.46995 * 264.99242 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09000 * 109.47280 * 300.00766 * 1 2 3 28 28 H 1.08996 * 109.46883 * 60.00600 * 1 2 3 29 29 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.03995 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.95850 * 179.72952 * 5 4 3 32 32 H 1.08011 * 119.91513 * 179.97438 * 6 5 4 33 33 H 1.08004 * 119.96615 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.46935 * 144.99602 * 9 8 7 35 35 H 1.08999 * 109.47513 * 24.99910 * 9 8 7 36 36 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 37 37 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 39 39 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 41 41 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0060 5 6 1.5095 4.0106 -0.0003 6 6 2.8329 4.4130 -0.0064 7 6 3.8455 3.4715 -0.0058 8 6 3.5386 2.1250 0.0001 9 6 4.6430 1.0995 0.0002 10 6 4.9221 0.6618 -1.4144 11 8 4.2872 1.1361 -2.3325 12 7 5.8781 -0.2562 -1.6597 13 6 6.1987 -0.5934 -2.9707 14 6 5.2144 -0.6188 -3.9469 15 6 5.5377 -0.9599 -5.2467 16 6 6.8457 -1.2744 -5.5909 17 6 7.8352 -1.2527 -4.6511 18 6 7.5327 -0.9088 -3.3204 19 6 8.5495 -0.8845 -2.3429 20 1 8.4420 -0.2615 -1.4672 21 6 9.6975 -1.6680 -2.5076 22 7 9.6515 -2.7496 -3.2425 23 14 11.2954 -1.1693 -1.6786 24 1 12.3536 -2.1575 -2.0084 25 1 11.7054 0.1740 -2.1612 26 1 11.0976 -1.1276 -0.2074 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.1617 2.3527 0.0103 31 1 0.7212 4.7488 0.0000 32 1 3.0758 5.4654 -0.0117 33 1 4.8777 3.7894 -0.0101 34 1 4.3383 0.2376 0.5939 35 1 5.5444 1.5363 0.4300 36 1 6.3425 -0.6816 -0.9220 37 1 4.1936 -0.3764 -3.6904 38 1 4.7660 -0.9815 -6.0019 39 1 7.0822 -1.5385 -6.6110 40 1 8.8495 -1.4985 -4.9287 41 1 8.8056 -3.0513 -3.6091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344383967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:11 Heat of formation + Delta-G solvation = -13.522187 kcal Electronic energy + Delta-G solvation = -24505.976112 eV Core-core repulsion = 21054.475140 eV Total energy + Delta-G solvation = -3451.500972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37987 -40.06677 -38.97431 -35.78987 -35.45261 -34.01472 -32.23139 -31.23510 -30.62937 -29.71462 -28.44336 -26.88475 -23.89819 -23.72900 -22.96157 -22.25531 -21.00547 -19.84006 -18.67675 -18.16089 -17.82209 -17.06203 -16.77783 -16.51469 -16.04369 -15.65801 -15.63482 -15.38732 -15.00808 -14.85641 -14.71736 -14.46293 -14.15115 -14.02251 -13.82957 -13.49121 -13.47442 -13.31740 -12.94499 -12.66641 -12.53865 -12.43218 -12.12803 -12.04481 -11.94901 -11.46864 -11.10751 -11.06252 -10.81382 -10.68825 -10.56305 -9.79264 -9.53558 -9.28380 -8.79012 -8.38997 -6.39680 0.24464 0.36023 0.58506 0.78965 0.93133 1.49286 1.54420 1.66718 1.81284 1.82333 2.34866 2.38084 2.71395 2.83395 3.55332 3.60830 3.82307 4.03114 4.09091 4.20981 4.22987 4.27752 4.40491 4.41430 4.44317 4.48895 4.57912 4.69241 4.78003 4.83970 4.97504 5.03371 5.09726 5.28170 5.32404 5.47156 5.50891 5.54465 5.69940 5.79625 5.94829 5.97571 6.05051 6.14883 6.36765 6.65557 6.89438 6.93454 7.40869 8.06964 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003423 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.452524 B = 8177.541335 C = 8836.385274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.165 6.165 3 C -0.082 4.082 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.105 4.105 8 C -0.066 4.066 9 C -0.096 4.096 10 C 0.507 3.493 11 O -0.562 6.562 12 N -0.640 5.640 13 C 0.007 3.993 14 C -0.088 4.088 15 C -0.242 4.242 16 C -0.097 4.097 17 C -0.228 4.228 18 C 0.064 3.936 19 C -0.543 4.543 20 H 0.081 0.919 21 C 0.008 3.992 22 N -0.816 5.816 23 Si 1.114 2.886 24 H -0.276 1.276 25 H -0.269 1.269 26 H -0.252 1.252 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 8.894 11.629 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.078 5.922 3 C -0.195 4.195 4 C -0.168 4.168 5 C -0.123 4.123 6 C -0.149 4.149 7 C -0.125 4.125 8 C -0.072 4.072 9 C -0.136 4.136 10 C 0.295 3.705 11 O -0.441 6.441 12 N -0.283 5.283 13 C -0.088 4.088 14 C -0.108 4.108 15 C -0.262 4.262 16 C -0.116 4.116 17 C -0.248 4.248 18 C 0.060 3.940 19 C -0.572 4.572 20 H 0.099 0.901 21 C -0.209 4.209 22 N -0.439 5.439 23 Si 0.932 3.068 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.176 1.176 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.160 0.840 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.415 7.688 11.157 17.717 hybrid contribution -2.150 0.942 -0.398 2.381 sum -13.565 8.630 10.759 19.345 Atomic orbital electron populations 1.23759 0.91717 1.08301 1.06442 1.85760 1.10088 1.04109 1.92254 1.21706 0.96371 0.96687 1.04746 1.21419 0.98520 0.93534 1.03280 1.21407 0.97361 0.95394 0.98140 1.21473 0.92655 1.00532 1.00205 1.21239 1.00784 0.91665 0.98765 1.19055 0.91719 0.94489 1.01942 1.20651 0.99960 0.99895 0.93065 1.21009 0.79348 0.78170 0.91946 1.90627 1.49432 1.56718 1.47322 1.42877 1.38331 1.40299 1.06809 1.17778 0.92457 1.13400 0.85130 1.20850 0.97666 0.98799 0.93491 1.20575 0.96507 1.12894 0.96194 1.20639 0.93296 0.99176 0.98467 1.20779 0.98190 1.12466 0.93356 1.17813 0.90625 0.92366 0.93196 1.20523 1.03498 1.25597 1.07534 0.90072 1.28335 1.06432 0.91564 0.94608 1.70574 1.31747 1.18195 1.23350 0.83027 0.70300 0.76704 0.76786 1.20045 1.19434 1.17552 0.88053 0.89491 0.86030 0.84033 0.82808 0.83237 0.84759 0.86892 0.85463 0.75380 0.87447 0.86782 0.86712 0.88691 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.15 113.37 1.04 -1.16 16 2 S -0.16 -4.35 20.86 -56.49 -1.18 -5.53 16 3 C -0.08 -2.27 6.11 22.62 0.14 -2.13 16 4 C -0.14 -3.22 9.36 22.41 0.21 -3.01 16 5 C -0.10 -2.02 10.04 22.25 0.22 -1.80 16 6 C -0.13 -2.68 10.04 22.30 0.22 -2.45 16 7 C -0.10 -2.66 9.67 22.25 0.22 -2.44 16 8 C -0.07 -1.90 4.39 -19.72 -0.09 -1.99 16 9 C -0.10 -2.77 5.29 29.10 0.15 -2.62 16 10 C 0.51 19.82 7.64 87.65 0.67 20.48 16 11 O -0.56 -26.00 13.45 -3.03 -0.04 -26.04 16 12 N -0.64 -26.89 4.90 -302.28 -1.48 -28.37 16 13 C 0.01 0.34 6.33 38.88 0.25 0.59 16 14 C -0.09 -4.37 8.69 22.36 0.19 -4.18 16 15 C -0.24 -11.46 10.04 22.42 0.22 -11.23 16 16 C -0.10 -4.64 9.97 22.01 0.22 -4.42 16 17 C -0.23 -11.95 7.87 22.47 0.18 -11.77 16 18 C 0.06 3.39 5.32 -21.18 -0.11 3.28 16 19 C -0.54 -27.54 8.35 23.38 0.20 -27.35 16 20 H 0.08 3.87 7.39 -2.91 -0.02 3.85 16 21 C 0.01 0.37 4.95 85.26 0.42 0.79 16 22 N -0.82 -42.79 12.32 21.83 0.27 -42.52 16 23 Si 1.11 41.21 30.00 68.60 2.06 43.26 16 24 H -0.28 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 27 H 0.10 1.26 7.74 -2.39 -0.02 1.24 16 28 H 0.09 1.38 7.76 -2.39 -0.02 1.36 16 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.14 2.42 5.88 -2.91 -0.02 2.41 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 34 H 0.11 3.00 7.03 -2.38 -0.02 2.98 16 35 H 0.13 3.00 8.05 -2.39 -0.02 2.98 16 36 H 0.41 15.45 7.95 -92.71 -0.74 14.72 16 37 H 0.11 5.40 6.20 -2.91 -0.02 5.39 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.10 5.13 6.45 -2.91 -0.02 5.11 16 41 H 0.29 15.66 6.62 -92.70 -0.61 15.05 16 Total: -1.00 -67.80 355.57 4.46 -63.34 By element: Atomic # 1 Polarization: 46.78 SS G_CDS: 0.48 Total: 47.26 kcal Atomic # 6 Polarization: -55.75 SS G_CDS: 4.35 Total: -51.40 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -1.21 Total: -70.89 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.04 Total: -26.04 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.06 Total: 43.26 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -1.18 Total: -5.53 kcal Total: -67.80 4.46 -63.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344383967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.813 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds