Wall clock time and date at job start Tue Mar 31 2020 15:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21316 * 120.00109 * 2 1 4 4 C 1.46595 * 119.99729 * 179.97438 * 2 1 3 5 5 C 1.40094 * 120.20547 * 6.51770 * 4 2 1 6 6 C 1.37557 * 119.91840 * 180.02562 * 5 4 2 7 7 C 1.38963 * 120.34800 * 359.97313 * 6 5 4 8 8 F 1.35111 * 119.78630 * 179.97438 * 7 6 5 9 9 C 1.38309 * 120.42595 * 359.76921 * 7 6 5 10 10 C 1.38736 * 120.06487 * 0.51055 * 9 7 6 11 11 N 1.39018 * 120.17524 * 179.74426 * 10 9 7 12 12 C 1.34773 * 119.99552 * 42.35060 * 11 10 9 13 13 O 1.21583 * 120.00525 * 355.99931 * 12 11 10 14 14 C 1.47579 * 119.99487 * 175.99278 * 12 11 10 15 15 C 1.40048 * 119.89716 * 179.97438 * 14 12 11 16 16 C 1.36299 * 120.10104 * 180.27756 * 15 14 12 17 17 C 1.40898 * 119.89918 * 359.50780 * 16 15 14 18 18 C 1.41088 * 120.10404 * 180.24999 * 17 16 15 19 19 H 1.07993 * 120.00084 * 203.52119 * 18 17 16 20 20 C 1.40236 * 119.99764 * 23.52776 * 18 17 16 21 21 N 1.30645 * 120.00559 * 32.02616 * 20 18 17 22 22 Si 1.86810 * 119.99607 * 212.03159 * 20 18 17 23 23 H 1.48502 * 109.47190 * 94.98688 * 22 20 18 24 24 H 1.48497 * 109.46695 * 214.98518 * 22 20 18 25 25 H 1.48491 * 109.46827 * 334.98387 * 22 20 18 26 26 C 1.40901 * 119.79301 * 0.49315 * 17 16 15 27 27 C 1.36301 * 119.89644 * 359.75834 * 26 17 16 28 28 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46576 * 300.00202 * 1 2 3 30 30 H 1.08998 * 109.47024 * 59.99869 * 1 2 3 31 31 H 1.07993 * 120.03735 * 0.03927 * 5 4 2 32 32 H 1.07997 * 119.81970 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.96843 * 180.25422 * 9 7 6 34 34 H 0.97002 * 119.99654 * 222.35915 * 11 10 9 35 35 H 1.07995 * 119.94979 * 0.02562 * 15 14 12 36 36 H 1.08008 * 120.04892 * 179.72787 * 16 15 14 37 37 H 0.96997 * 119.99812 * 180.02562 * 21 20 18 38 38 H 1.08000 * 120.05147 * 179.73817 * 26 17 16 39 39 H 1.07997 * 119.94719 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0506 0.0000 4 6 2.2400 -1.2696 0.0006 5 6 1.5506 -2.4815 -0.1363 6 6 2.2442 -3.6694 -0.1345 7 6 3.6271 -3.6747 0.0020 8 9 4.2969 -4.8481 0.0029 9 6 4.3227 -2.4864 0.1328 10 6 3.6401 -1.2786 0.1390 11 7 4.3364 -0.0832 0.2757 12 6 5.4903 0.1048 -0.3948 13 8 5.9600 -0.7969 -1.0615 14 6 6.1837 1.4054 -0.3197 15 6 7.3830 1.5984 -1.0167 16 6 8.0298 2.7961 -0.9458 17 6 7.4847 3.8442 -0.1780 18 6 8.1479 5.0874 -0.1058 19 1 7.9753 5.7435 0.7345 20 6 9.0311 5.4712 -1.1252 21 7 8.8173 5.0847 -2.3547 22 14 10.5136 6.5351 -0.7251 23 1 11.7004 5.6691 -0.5084 24 1 10.7770 7.4621 -1.8549 25 1 10.2419 7.3197 0.5060 26 6 6.2780 3.6453 0.5216 27 6 5.6408 2.4426 0.4489 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.4760 -2.4830 -0.2434 32 1 1.7112 -4.6026 -0.2405 33 1 5.3978 -2.4990 0.2343 34 1 3.9917 0.6155 0.8536 35 1 7.7980 0.7957 -1.6081 36 1 8.9569 2.9425 -1.4802 37 1 9.4284 5.3499 -3.0597 38 1 5.8586 4.4446 1.1148 39 1 4.7160 2.2891 0.9851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344586809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:42 Heat of formation + Delta-G solvation = -72.380593 kcal Electronic energy + Delta-G solvation = -26235.206389 eV Core-core repulsion = 22214.939949 eV Total energy + Delta-G solvation = -4020.266440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.04394 -40.70690 -39.01995 -37.94218 -37.07556 -34.44307 -33.99165 -31.96965 -30.68498 -29.84665 -29.45482 -28.93109 -26.02836 -23.88401 -23.31534 -21.84293 -20.87643 -20.27976 -19.73486 -18.24363 -17.56014 -17.10336 -16.77519 -16.34675 -15.72257 -15.69477 -15.39047 -15.06345 -14.85171 -14.50857 -14.15663 -14.00442 -13.96555 -13.35548 -13.17389 -13.09792 -12.80156 -12.53754 -12.38806 -12.26414 -12.08340 -12.07179 -11.57808 -11.42047 -11.30164 -11.02160 -10.71645 -10.28288 -10.15467 -9.73335 -9.56351 -9.28529 -9.20787 -8.90973 -8.25639 -7.74805 -7.70495 -7.20850 -4.63280 0.40768 1.08498 2.15635 2.23125 2.85164 2.93512 2.96163 3.01063 3.37783 3.45619 3.68696 3.77330 3.89670 4.13493 4.39996 4.52202 4.78601 4.85317 5.10213 5.20774 5.21990 5.26680 5.49157 5.67741 5.71294 5.82541 5.90512 5.98668 6.02745 6.18376 6.24838 6.48849 6.71883 6.77945 6.90920 6.99395 7.05173 7.37779 7.44955 7.58156 7.62640 7.80728 7.97664 8.03413 8.33193 8.54643 8.69515 8.82916 9.72344 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.020263 B = 0.002816 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.490687 B = 9941.977363 C =10989.179148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.393 3.607 3 O -0.451 6.451 4 C -0.225 4.225 5 C -0.028 4.028 6 C -0.194 4.194 7 C 0.150 3.850 8 F -0.134 7.134 9 C -0.173 4.173 10 C 0.257 3.743 11 N -0.672 5.672 12 C 0.572 3.428 13 O -0.556 6.556 14 C -0.295 4.295 15 C -0.025 4.025 16 C -0.196 4.196 17 C 0.132 3.868 18 C -0.443 4.443 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.744 5.744 22 Si 0.906 3.094 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.236 4.236 27 C -0.036 4.036 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.291 0.709 38 H 0.099 0.901 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -10.228 4.673 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.272 3.728 3 O -0.326 6.326 4 C -0.229 4.229 5 C -0.047 4.047 6 C -0.214 4.214 7 C 0.130 3.870 8 F -0.112 7.112 9 C -0.194 4.194 10 C 0.157 3.843 11 N -0.318 5.318 12 C 0.370 3.630 13 O -0.436 6.436 14 C -0.300 4.300 15 C -0.044 4.044 16 C -0.215 4.215 17 C 0.129 3.871 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.142 4.142 21 N -0.365 5.365 22 Si 0.729 3.271 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.180 1.180 26 C -0.255 4.255 27 C -0.055 4.055 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.260 0.740 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.424 -10.207 3.935 16.554 hybrid contribution 0.517 0.454 0.188 0.713 sum -11.907 -9.754 4.123 15.934 Atomic orbital electron populations 1.22207 0.93678 1.04528 1.05036 1.22209 0.91666 0.87326 0.71635 1.90578 1.71600 1.34126 1.36340 1.20504 0.93104 0.95953 1.13341 1.21100 0.99921 0.89996 0.93645 1.20957 0.92138 0.99813 1.08447 1.17774 0.90058 0.80912 0.98280 1.91522 1.80788 1.45548 1.93335 1.21208 1.02422 0.89685 1.06077 1.17606 0.89407 0.86629 0.90608 1.43726 1.24466 1.15831 1.47818 1.18823 0.78295 0.88834 0.77013 1.90665 1.65743 1.44682 1.42547 1.18630 1.02592 0.93287 1.15471 1.20386 0.92700 0.96464 0.94849 1.20725 1.01650 0.92637 1.06506 1.17731 0.88932 0.92541 0.87893 1.19865 1.19471 1.02153 1.05346 0.89205 1.26154 0.98471 0.95737 0.93873 1.69824 1.32548 1.33307 1.00816 0.86322 0.81059 0.79859 0.79901 1.18694 1.19911 1.17973 1.20619 0.98225 0.97076 1.09613 1.20399 0.96532 0.93192 0.95419 0.89981 0.88741 0.88780 0.83749 0.84260 0.83004 0.74037 0.88136 0.87456 0.89782 0.88330 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 10.19 36.01 0.37 -1.07 16 2 C 0.39 4.82 7.19 -30.94 -0.22 4.60 16 3 O -0.45 -7.33 14.91 5.53 0.08 -7.25 16 4 C -0.22 -2.85 5.88 -104.90 -0.62 -3.46 16 5 C -0.03 -0.26 9.41 -39.13 -0.37 -0.63 16 6 C -0.19 -1.93 10.00 -39.56 -0.40 -2.32 16 7 C 0.15 1.97 7.30 -39.29 -0.29 1.68 16 8 F -0.13 -1.79 17.26 2.25 0.04 -1.75 16 9 C -0.17 -2.71 8.62 -39.37 -0.34 -3.05 16 10 C 0.26 4.11 6.16 -83.49 -0.51 3.60 16 11 N -0.67 -12.23 4.22 -10.59 -0.04 -12.28 16 12 C 0.57 12.52 7.56 -12.45 -0.09 12.42 16 13 O -0.56 -13.20 14.26 5.29 0.08 -13.12 16 14 C -0.30 -6.92 5.89 -104.73 -0.62 -7.53 16 15 C -0.02 -0.61 9.52 -39.60 -0.38 -0.98 16 16 C -0.20 -4.99 8.73 -39.27 -0.34 -5.33 16 17 C 0.13 3.37 5.56 -106.80 -0.59 2.77 16 18 C -0.44 -10.90 8.94 -37.75 -0.34 -11.24 16 19 H 0.09 2.10 8.02 -52.49 -0.42 1.68 16 20 C 0.08 1.94 4.77 -17.31 -0.08 1.85 16 21 N -0.74 -17.96 11.85 55.56 0.66 -17.30 16 22 Si 0.91 17.01 29.66 -169.99 -5.04 11.97 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 26 C -0.24 -5.57 9.73 -39.27 -0.38 -5.95 16 27 C -0.04 -0.81 9.47 -39.60 -0.37 -1.18 16 28 H 0.08 0.37 5.64 -51.93 -0.29 0.08 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.15 0.75 5.99 -52.49 -0.31 0.43 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.15 2.66 6.79 -52.48 -0.36 2.30 16 34 H 0.42 7.18 5.06 -40.82 -0.21 6.97 16 35 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 36 H 0.11 2.75 6.61 -52.48 -0.35 2.40 16 37 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.77 6.38 -52.49 -0.33 1.44 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -29.81 341.19 -8.17 -37.98 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -3.50 Total: 12.45 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -5.58 Total: -15.83 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.61 Total: -29.58 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.37 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.04 Total: 11.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.81 -8.17 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344586809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.405 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds