Wall clock time and date at job start Tue Mar 31 2020 15:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 103.00099 * 2 1 4 4 C 1.39004 * 120.07917 * 0.29369 * 3 2 1 5 5 C 1.38054 * 119.91890 * 180.29973 * 4 3 2 6 6 C 1.38327 * 120.08034 * 359.70192 * 5 4 3 7 7 C 1.38278 * 120.16219 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.07914 * 0.04619 * 7 6 5 9 9 C 1.50703 * 120.04315 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46925 * 264.99880 * 9 8 7 11 11 O 1.21274 * 120.00312 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99731 * 179.97438 * 10 9 8 13 13 C 1.39244 * 120.00303 * 185.09660 * 12 10 9 14 14 C 1.39471 * 119.83969 * 214.18302 * 13 12 10 15 15 C 1.36377 * 120.17179 * 179.71750 * 14 13 12 16 16 C 1.40871 * 119.82460 * 0.55520 * 15 14 13 17 17 C 1.41154 * 120.16357 * 179.69555 * 16 15 14 18 18 H 1.07995 * 120.00074 * 205.37147 * 17 16 15 19 19 C 1.39905 * 119.99823 * 25.37054 * 17 16 15 20 20 N 1.30871 * 119.99845 * 16.83181 * 19 17 16 21 21 Si 1.86796 * 119.99903 * 196.83369 * 19 17 16 22 22 H 1.48510 * 109.47217 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47147 * 119.99822 * 21 19 17 24 24 H 1.48494 * 109.47330 * 240.00065 * 21 19 17 25 25 C 1.40870 * 119.67311 * 359.72693 * 16 15 14 26 26 C 1.36380 * 119.82603 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47415 * 299.99819 * 1 2 3 28 28 H 1.09004 * 109.47060 * 60.00136 * 1 2 3 29 29 H 1.09004 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.04213 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.96296 * 179.72558 * 5 4 3 32 32 H 1.08003 * 119.91774 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.96402 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47045 * 144.99640 * 9 8 7 35 35 H 1.08998 * 109.46718 * 24.99861 * 9 8 7 36 36 H 0.97006 * 120.00091 * 5.10884 * 12 10 9 37 37 H 1.08008 * 119.91338 * 0.02562 * 14 13 12 38 38 H 1.07992 * 120.08899 * 180.27454 * 15 14 13 39 39 H 0.97007 * 119.99449 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.08977 * 179.97438 * 25 16 15 41 41 H 1.08004 * 119.90942 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6663 0.0062 5 6 1.5094 4.0105 -0.0001 6 6 2.8328 4.4131 -0.0063 7 6 3.8455 3.4715 -0.0057 8 6 3.5386 2.1250 0.0002 9 6 4.6429 1.0995 0.0002 10 6 4.9220 0.6619 -1.4145 11 8 4.2872 1.1363 -2.3325 12 7 5.8779 -0.2560 -1.6597 13 6 6.2095 -0.5826 -2.9721 14 6 6.5864 -1.8876 -3.2884 15 6 6.9069 -2.2162 -4.5726 16 6 6.8678 -1.2308 -5.5786 17 6 7.2044 -1.5616 -6.9089 18 1 7.5720 -0.7983 -7.5786 19 6 7.0617 -2.8783 -7.3598 20 7 6.3249 -3.7244 -6.6861 21 14 7.9228 -3.4285 -8.9234 22 1 8.6891 -2.2911 -9.4931 23 1 8.8523 -4.5436 -8.6105 24 1 6.9123 -3.8884 -9.9095 25 6 6.4918 0.0865 -5.2502 26 6 6.1682 0.3985 -3.9626 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.1616 2.3527 0.0105 31 1 0.7211 4.7488 0.0002 32 1 3.0757 5.4655 -0.0108 33 1 4.8776 3.7894 -0.0101 34 1 4.3382 0.2376 0.5938 35 1 5.5443 1.5363 0.4300 36 1 6.3349 -0.6894 -0.9219 37 1 6.6198 -2.6410 -2.5153 38 1 7.1944 -3.2281 -4.8169 39 1 6.2257 -4.6373 -6.9990 40 1 6.4600 0.8473 -6.0160 41 1 5.8801 1.4081 -3.7093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346317169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:15 Heat of formation + Delta-G solvation = 8.409677 kcal Electronic energy + Delta-G solvation = -23996.165442 eV Core-core repulsion = 20545.615508 eV Total energy + Delta-G solvation = -3450.549935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93041 -38.82060 -37.13374 -34.38382 -33.08911 -32.74298 -31.35586 -29.56085 -29.09812 -28.95911 -27.52726 -24.76169 -22.91314 -22.22096 -21.33320 -20.61063 -19.49614 -17.68275 -17.32639 -16.75267 -16.34848 -16.01332 -15.64831 -15.16017 -14.66901 -14.39453 -14.16022 -14.01612 -13.88993 -13.60943 -13.20504 -13.02981 -12.71449 -12.61294 -12.49530 -12.10761 -11.92182 -11.82323 -11.62663 -11.27695 -11.17620 -11.10606 -10.92722 -10.69668 -10.19592 -9.94498 -9.76102 -9.54557 -9.32847 -9.12919 -8.90350 -8.74899 -7.49688 -7.40258 -6.92810 -6.70115 -4.26010 1.16942 1.27487 1.48018 2.35722 2.62369 3.04032 3.09146 3.14200 3.15262 3.43601 3.54361 3.95215 4.00313 4.60075 4.65948 4.72047 4.87545 4.89517 4.92716 5.16253 5.26347 5.34964 5.38432 5.45044 5.52749 5.73024 5.74684 5.92364 6.16272 6.24860 6.36093 6.44094 6.47067 6.82715 6.83868 6.99383 7.08615 7.24003 7.33869 7.63788 7.78355 7.95227 8.07668 8.32222 8.36658 8.63823 8.85729 8.92365 9.05828 10.21519 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002682 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.656593 B =10435.890117 C =10882.755277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.105 6.105 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.090 4.090 8 C -0.041 4.041 9 C -0.107 4.107 10 C 0.503 3.497 11 O -0.517 6.517 12 N -0.653 5.653 13 C -0.001 4.001 14 C -0.114 4.114 15 C -0.153 4.153 16 C 0.105 3.895 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.793 5.793 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.215 4.215 26 C -0.076 4.076 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 8.042 16.267 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.139 5.861 3 C -0.181 4.181 4 C -0.159 4.159 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.109 4.109 8 C -0.047 4.047 9 C -0.147 4.147 10 C 0.289 3.711 11 O -0.392 6.392 12 N -0.297 5.297 13 C -0.094 4.094 14 C -0.134 4.134 15 C -0.173 4.173 16 C 0.102 3.898 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.235 4.235 26 C -0.096 4.096 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.153 7.072 15.600 18.562 hybrid contribution -0.449 0.496 -0.387 0.773 sum -7.602 7.567 15.213 18.614 Atomic orbital electron populations 1.23702 0.95661 1.07027 1.05400 1.85634 1.05633 1.03002 1.91849 1.21569 0.95957 0.96628 1.03905 1.21072 0.97906 0.93258 1.03706 1.20979 0.96613 0.95134 0.99627 1.21091 0.92738 0.99425 1.01353 1.20945 0.99572 0.91714 0.98701 1.18893 0.91486 0.93945 1.00395 1.20697 0.98477 0.99071 0.96500 1.20207 0.79902 0.80727 0.90264 1.90719 1.47823 1.54989 1.45706 1.42985 1.37629 1.41540 1.07523 1.17140 1.14910 0.93954 0.83351 1.20228 1.03629 0.92735 0.96832 1.20890 1.05300 1.00390 0.90689 1.17655 0.88042 0.90832 0.93252 1.19579 1.38323 0.94138 0.96741 0.90397 1.25918 0.93212 0.96472 0.98740 1.69861 1.28322 1.05744 1.37984 0.86270 0.79895 0.79378 0.81226 1.18411 1.19748 1.20038 1.20646 1.10263 0.97537 0.95067 1.20217 0.99472 0.96938 0.92995 0.90009 0.89722 0.87462 0.86061 0.85972 0.85874 0.85619 0.88055 0.87927 0.77315 0.89204 0.86133 0.90977 0.88804 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.15 101.05 0.92 -0.46 16 2 S -0.10 -1.39 20.86 -107.50 -2.24 -3.63 16 3 C -0.07 -0.94 6.11 -39.03 -0.24 -1.18 16 4 C -0.14 -1.63 9.36 -39.37 -0.37 -1.99 16 5 C -0.10 -1.12 10.04 -39.62 -0.40 -1.52 16 6 C -0.13 -1.38 10.04 -39.53 -0.40 -1.78 16 7 C -0.09 -1.10 9.67 -39.62 -0.38 -1.49 16 8 C -0.04 -0.57 4.39 -104.41 -0.46 -1.03 16 9 C -0.11 -1.40 5.29 -29.04 -0.15 -1.55 16 10 C 0.50 9.03 7.52 -10.99 -0.08 8.95 16 11 O -0.52 -11.58 13.75 5.56 0.08 -11.50 16 12 N -0.65 -11.79 5.31 -9.74 -0.05 -11.84 16 13 C 0.00 -0.03 6.27 -83.57 -0.52 -0.55 16 14 C -0.11 -2.66 9.89 -39.79 -0.39 -3.06 16 15 C -0.15 -3.99 8.63 -39.26 -0.34 -4.33 16 16 C 0.10 2.86 5.57 -106.80 -0.59 2.26 16 17 C -0.46 -12.36 9.04 -37.85 -0.34 -12.70 16 18 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 19 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 20 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 21 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.21 -5.59 9.74 -39.26 -0.38 -5.97 16 26 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 27 H 0.08 0.61 7.74 -51.92 -0.40 0.21 16 28 H 0.08 0.78 7.76 -51.92 -0.40 0.38 16 29 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.12 1.19 5.88 -52.49 -0.31 0.88 16 31 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.10 1.19 7.03 -51.93 -0.36 0.83 16 35 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.39 5.54 8.82 -40.82 -0.36 5.18 16 37 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.12 3.21 6.18 -52.49 -0.32 2.89 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.10 2.42 6.47 -52.48 -0.34 2.08 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -32.48 358.77 -10.80 -43.28 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.01 Total: 11.45 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -4.56 Total: -26.82 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.56 Total: -31.99 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.24 Total: -3.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.48 -10.80 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346317169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.695 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds