Wall clock time and date at job start Tue Mar 31 2020 15:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76200 * 103.00099 * 2 1 4 4 C 1.39004 * 120.07917 * 0.29369 * 3 2 1 5 5 C 1.38054 * 119.91890 * 180.29973 * 4 3 2 6 6 C 1.38327 * 120.08034 * 359.70192 * 5 4 3 7 7 C 1.38278 * 120.16219 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.07914 * 0.04619 * 7 6 5 9 9 C 1.50703 * 120.04315 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46925 * 264.99880 * 9 8 7 11 11 O 1.21274 * 120.00312 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99731 * 179.97438 * 10 9 8 13 13 C 1.39244 * 120.00303 * 185.09660 * 12 10 9 14 14 C 1.39471 * 119.83969 * 214.18302 * 13 12 10 15 15 C 1.36377 * 120.17179 * 179.71750 * 14 13 12 16 16 C 1.40871 * 119.82460 * 0.55520 * 15 14 13 17 17 C 1.41154 * 120.16357 * 179.69555 * 16 15 14 18 18 H 1.07995 * 120.00074 * 205.37147 * 17 16 15 19 19 C 1.39905 * 119.99823 * 25.37054 * 17 16 15 20 20 N 1.30871 * 119.99845 * 16.83181 * 19 17 16 21 21 Si 1.86796 * 119.99903 * 196.83369 * 19 17 16 22 22 H 1.48510 * 109.47217 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47147 * 119.99822 * 21 19 17 24 24 H 1.48494 * 109.47330 * 240.00065 * 21 19 17 25 25 C 1.40870 * 119.67311 * 359.72693 * 16 15 14 26 26 C 1.36380 * 119.82603 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47415 * 299.99819 * 1 2 3 28 28 H 1.09004 * 109.47060 * 60.00136 * 1 2 3 29 29 H 1.09004 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.04213 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.96296 * 179.72558 * 5 4 3 32 32 H 1.08003 * 119.91774 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.96402 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47045 * 144.99640 * 9 8 7 35 35 H 1.08998 * 109.46718 * 24.99861 * 9 8 7 36 36 H 0.97006 * 120.00091 * 5.10884 * 12 10 9 37 37 H 1.08008 * 119.91338 * 0.02562 * 14 13 12 38 38 H 1.07992 * 120.08899 * 180.27454 * 15 14 13 39 39 H 0.97007 * 119.99449 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.08977 * 179.97438 * 25 16 15 41 41 H 1.08004 * 119.90942 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6663 0.0062 5 6 1.5094 4.0105 -0.0001 6 6 2.8328 4.4131 -0.0063 7 6 3.8455 3.4715 -0.0057 8 6 3.5386 2.1250 0.0002 9 6 4.6429 1.0995 0.0002 10 6 4.9220 0.6619 -1.4145 11 8 4.2872 1.1363 -2.3325 12 7 5.8779 -0.2560 -1.6597 13 6 6.2095 -0.5826 -2.9721 14 6 6.5864 -1.8876 -3.2884 15 6 6.9069 -2.2162 -4.5726 16 6 6.8678 -1.2308 -5.5786 17 6 7.2044 -1.5616 -6.9089 18 1 7.5720 -0.7983 -7.5786 19 6 7.0617 -2.8783 -7.3598 20 7 6.3249 -3.7244 -6.6861 21 14 7.9228 -3.4285 -8.9234 22 1 8.6891 -2.2911 -9.4931 23 1 8.8523 -4.5436 -8.6105 24 1 6.9123 -3.8884 -9.9095 25 6 6.4918 0.0865 -5.2502 26 6 6.1682 0.3985 -3.9626 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.1616 2.3527 0.0105 31 1 0.7211 4.7488 0.0002 32 1 3.0757 5.4655 -0.0108 33 1 4.8776 3.7894 -0.0101 34 1 4.3382 0.2376 0.5938 35 1 5.5443 1.5363 0.4300 36 1 6.3349 -0.6894 -0.9219 37 1 6.6198 -2.6410 -2.5153 38 1 7.1944 -3.2281 -4.8169 39 1 6.2257 -4.6373 -6.9990 40 1 6.4600 0.8473 -6.0160 41 1 5.8801 1.4081 -3.7093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346317169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:14 Heat of formation + Delta-G solvation = -8.921926 kcal Electronic energy + Delta-G solvation = -23996.916997 eV Core-core repulsion = 20545.615508 eV Total energy + Delta-G solvation = -3451.301489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30858 -39.98902 -38.88840 -36.14933 -34.73459 -33.93275 -32.20975 -31.48321 -30.90124 -29.71400 -28.76122 -26.55188 -23.80858 -23.67025 -22.94427 -22.23368 -21.03896 -19.28260 -18.69851 -18.16371 -17.83687 -17.08523 -17.01113 -16.62751 -15.92737 -15.63171 -15.52918 -15.20076 -14.93873 -14.84124 -14.68265 -14.41057 -14.06093 -13.97785 -13.67729 -13.47325 -13.41628 -13.23730 -13.04451 -12.78607 -12.71809 -12.52256 -12.44904 -12.02622 -11.74768 -11.43611 -11.14310 -11.10759 -10.82885 -10.64327 -10.59836 -9.76937 -9.46521 -8.83447 -8.59137 -8.36953 -6.26965 0.26308 0.38112 0.60072 0.82313 1.14218 1.39188 1.44766 1.49518 1.54875 1.88151 2.22278 2.37077 2.75222 2.85761 3.62813 3.73042 3.85615 4.06151 4.12243 4.20341 4.22938 4.31179 4.40373 4.45878 4.51062 4.51452 4.60906 4.78429 4.85560 4.93297 5.06031 5.12505 5.17287 5.30164 5.33515 5.46375 5.48989 5.56124 5.66379 5.90653 5.99994 6.04632 6.12202 6.37864 6.65666 6.79333 6.93553 7.00311 7.47869 8.34252 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.002682 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.656593 B =10435.890117 C =10882.755277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.162 6.162 3 C -0.084 4.084 4 C -0.147 4.147 5 C -0.106 4.106 6 C -0.130 4.130 7 C -0.102 4.102 8 C -0.068 4.068 9 C -0.094 4.094 10 C 0.505 3.495 11 O -0.563 6.563 12 N -0.647 5.647 13 C 0.014 3.986 14 C -0.114 4.114 15 C -0.170 4.170 16 C 0.074 3.926 17 C -0.497 4.497 18 H 0.073 0.927 19 C 0.034 3.966 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.267 1.267 25 C -0.234 4.234 26 C -0.087 4.087 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.416 0.584 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.289 0.711 40 H 0.092 0.908 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 8.512 17.711 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.081 5.919 3 C -0.197 4.197 4 C -0.171 4.171 5 C -0.125 4.125 6 C -0.150 4.150 7 C -0.122 4.122 8 C -0.074 4.074 9 C -0.133 4.133 10 C 0.293 3.707 11 O -0.441 6.441 12 N -0.293 5.293 13 C -0.079 4.079 14 C -0.134 4.134 15 C -0.190 4.190 16 C 0.072 3.928 17 C -0.526 4.526 18 H 0.092 0.908 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.805 3.195 22 H -0.183 1.183 23 H -0.185 1.185 24 H -0.192 1.192 25 C -0.254 4.254 26 C -0.107 4.107 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.253 0.747 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.604 7.547 17.104 20.182 hybrid contribution -0.442 0.459 -0.691 0.940 sum -8.047 8.006 16.413 19.955 Atomic orbital electron populations 1.23756 0.91982 1.08260 1.06341 1.85668 1.09898 1.04178 1.92202 1.21743 0.96626 0.96572 1.04743 1.21406 0.98523 0.93666 1.03481 1.21394 0.97522 0.95310 0.98286 1.21488 0.92636 1.00652 1.00256 1.21263 1.00878 0.91513 0.98525 1.19124 0.91752 0.94732 1.01827 1.20666 1.00010 0.99787 0.92877 1.21067 0.78477 0.79199 0.91912 1.90698 1.49346 1.56337 1.47758 1.42942 1.38108 1.41910 1.06318 1.17205 1.12356 0.93224 0.85120 1.20496 1.02507 0.93721 0.96670 1.20904 1.06543 0.99805 0.91777 1.17968 0.89161 0.91578 0.94105 1.19798 1.40335 0.95418 0.97043 0.90842 1.26771 0.93235 0.95808 1.02247 1.69898 1.29007 1.06403 1.39850 0.85122 0.78718 0.78936 0.76684 1.18308 1.18486 1.19201 1.20774 1.11192 0.97472 0.95941 1.20318 0.99747 0.97523 0.93092 0.87957 0.89797 0.86086 0.84396 0.83122 0.83258 0.84149 0.86693 0.84532 0.74696 0.85974 0.87187 0.90059 0.88973 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.15 113.37 1.04 -1.26 16 2 S -0.16 -4.21 20.86 -56.49 -1.18 -5.39 16 3 C -0.08 -2.24 6.11 22.62 0.14 -2.10 16 4 C -0.15 -3.28 9.36 22.41 0.21 -3.07 16 5 C -0.11 -2.03 10.04 22.25 0.22 -1.81 16 6 C -0.13 -2.55 10.04 22.30 0.22 -2.33 16 7 C -0.10 -2.34 9.67 22.25 0.22 -2.12 16 8 C -0.07 -1.80 4.39 -19.72 -0.09 -1.89 16 9 C -0.09 -2.28 5.29 29.10 0.15 -2.12 16 10 C 0.51 17.61 7.52 87.66 0.66 18.27 16 11 O -0.56 -25.29 13.75 -3.01 -0.04 -25.33 16 12 N -0.65 -22.44 5.31 -303.13 -1.61 -24.05 16 13 C 0.01 0.65 6.27 38.56 0.24 0.90 16 14 C -0.11 -5.28 9.89 22.13 0.22 -5.06 16 15 C -0.17 -9.10 8.63 22.48 0.19 -8.91 16 16 C 0.07 4.21 5.57 -21.27 -0.12 4.10 16 17 C -0.50 -27.79 9.04 23.39 0.21 -27.57 16 18 H 0.07 4.00 7.90 -2.91 -0.02 3.97 16 19 C 0.03 1.75 5.15 85.24 0.44 2.19 16 20 N -0.83 -43.97 10.95 21.82 0.24 -43.73 16 21 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.23 -12.64 9.74 22.48 0.22 -12.43 16 26 C -0.09 -4.35 8.57 22.14 0.19 -4.16 16 27 H 0.10 1.30 7.74 -2.39 -0.02 1.28 16 28 H 0.08 1.44 7.76 -2.39 -0.02 1.42 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.14 2.44 5.88 -2.91 -0.02 2.43 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.12 2.50 7.03 -2.39 -0.02 2.49 16 35 H 0.14 2.33 8.05 -2.39 -0.02 2.31 16 36 H 0.42 10.70 8.82 -92.70 -0.82 9.89 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.11 6.04 6.18 -2.91 -0.02 6.02 16 39 H 0.29 13.78 8.30 -92.70 -0.77 13.01 16 40 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.10 4.95 6.47 -2.91 -0.02 4.93 16 Total: -1.00 -73.31 358.77 4.06 -69.25 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: 0.25 Total: 37.68 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 4.37 Total: -49.39 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.37 Total: -67.78 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.04 Total: -25.33 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -1.18 Total: -5.39 kcal Total: -73.31 4.06 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346317169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.327 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds