Wall clock time and date at job start Tue Mar 31 2020 15:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99875 * 2 1 4 4 C 1.50699 * 109.47362 * 275.00094 * 3 2 1 5 5 C 1.38260 * 119.98985 * 269.72927 * 4 3 2 6 6 C 1.38222 * 120.05355 * 179.72148 * 5 4 3 7 7 C 1.38215 * 120.02283 * 0.55079 * 6 5 4 8 8 C 1.38436 * 119.97729 * 359.72125 * 7 6 5 9 9 F 1.35102 * 120.03168 * 180.02562 * 8 7 6 10 10 C 1.38179 * 119.98367 * 89.99643 * 4 3 2 11 11 S 1.65591 * 119.99920 * 180.02562 * 2 1 3 12 12 O 1.42093 * 104.28114 * 26.07239 * 11 2 1 13 13 O 1.42107 * 104.27896 * 153.92888 * 11 2 1 14 14 C 1.81405 * 104.45210 * 269.99689 * 11 2 1 15 15 C 1.53002 * 109.47216 * 173.98414 * 14 11 2 16 16 C 1.50697 * 115.54861 * 65.20248 * 15 14 11 17 17 H 1.08001 * 119.99906 * 264.77703 * 16 15 14 18 18 C 1.37871 * 120.00153 * 84.78719 * 16 15 14 19 19 N 1.31518 * 119.99857 * 352.22206 * 18 16 15 20 20 Si 1.86800 * 120.00054 * 172.22933 * 18 16 15 21 21 H 1.48499 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47426 * 119.99966 * 20 18 16 23 23 H 1.48501 * 109.46752 * 239.99641 * 20 18 16 24 24 C 1.53005 * 117.49546 * 279.53070 * 15 14 11 25 25 C 1.52999 * 117.49553 * 210.87462 * 15 14 11 26 26 H 1.08994 * 109.47579 * 89.99576 * 1 2 3 27 27 H 1.09003 * 109.46798 * 209.99989 * 1 2 3 28 28 H 1.08999 * 109.47138 * 329.99679 * 1 2 3 29 29 H 1.09000 * 109.46847 * 154.99835 * 3 2 1 30 30 H 1.09003 * 109.46782 * 35.00303 * 3 2 1 31 31 H 1.08004 * 119.97386 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.98740 * 180.27149 * 6 5 4 33 33 H 1.08007 * 120.01393 * 179.74794 * 7 6 5 34 34 H 1.08004 * 120.01675 * 359.97438 * 10 4 3 35 35 H 1.08996 * 109.47037 * 293.98437 * 14 11 2 36 36 H 1.09000 * 109.46951 * 53.98215 * 14 11 2 37 37 H 0.96999 * 119.99517 * 185.02355 * 19 18 16 38 38 H 1.08999 * 117.49982 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49062 * 145.02362 * 24 15 14 40 40 H 1.09003 * 117.49403 * 214.97658 * 25 15 14 41 41 H 1.08998 * 117.50009 * 359.96881 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 6 3.4434 1.4018 -2.1670 6 6 3.5738 1.8522 -3.4672 7 6 2.6083 2.6764 -4.0137 8 6 1.5073 3.0461 -3.2603 9 9 0.5626 3.8513 -3.7936 10 6 1.3748 2.5896 -1.9596 11 16 2.2930 -1.4341 -0.0006 12 8 1.3970 -2.3558 -0.6063 13 8 3.5395 -1.1188 -0.6057 14 6 2.5194 -1.8269 1.7558 15 6 3.1467 -3.2158 1.8911 16 6 4.5460 -3.3526 1.3486 17 1 4.7026 -3.7208 0.3454 18 6 5.6262 -3.0081 2.1330 19 7 5.4351 -2.4184 3.2929 20 14 7.3612 -3.3787 1.5481 21 1 7.3050 -4.0418 0.2206 22 1 8.1274 -2.1115 1.4370 23 1 8.0304 -4.2779 2.5222 24 6 2.2184 -4.4255 1.7646 25 6 2.7865 -4.0358 3.1315 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 3.1858 1.1177 0.4343 30 1 1.6501 2.0043 0.5895 31 1 4.2008 0.7617 -1.7391 32 1 4.4328 1.5637 -4.0548 33 1 2.7124 3.0316 -5.0284 34 1 0.5160 2.8770 -1.3711 35 1 3.1756 -1.0859 2.2122 36 1 1.5523 -1.8144 2.2585 37 1 6.1949 -2.1104 3.8113 38 1 1.1610 -4.2319 1.5846 39 1 2.6201 -5.3204 1.2894 40 1 3.5616 -4.6746 3.5550 41 1 2.1031 -3.5856 3.8515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346446987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:26 Heat of formation + Delta-G solvation = -64.118494 kcal Electronic energy + Delta-G solvation = -26319.397539 eV Core-core repulsion = 22434.933322 eV Total energy + Delta-G solvation = -3884.464217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.91780 -39.23449 -36.79580 -36.33774 -36.04620 -35.06990 -32.07949 -31.58735 -30.47821 -28.20418 -27.38052 -25.52906 -24.63786 -22.71851 -21.57789 -21.24506 -19.59799 -18.36948 -17.43134 -17.10649 -16.48634 -16.18901 -16.05568 -15.84680 -15.56646 -15.22997 -14.72156 -14.33596 -14.19341 -13.88537 -13.76558 -13.41244 -13.17219 -12.91193 -12.60706 -12.27127 -11.99777 -11.87709 -11.84620 -11.69249 -11.30164 -11.20187 -11.08358 -11.03539 -10.98619 -10.94166 -10.59929 -10.48653 -10.14833 -9.75209 -9.07182 -9.00393 -8.93517 -8.64472 -8.60762 -8.10903 -6.17735 -4.28200 0.89041 1.21116 1.22474 3.24273 3.25411 3.33744 3.40745 3.68427 4.18665 4.33843 4.55725 4.67667 4.69741 4.82639 4.89723 5.06117 5.09878 5.16384 5.29070 5.36573 5.43344 5.52452 5.64041 5.65098 5.82890 5.84209 5.89690 6.00411 6.06865 6.16020 6.23794 6.34358 6.42814 6.56609 6.57677 6.68553 6.74778 6.93756 6.96089 7.20798 7.35583 7.77042 8.16849 8.77845 9.43123 10.90009 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.004157 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.882478 B = 6733.297207 C = 7755.876244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.010 6.010 3 C 0.164 3.836 4 C -0.079 4.079 5 C -0.103 4.103 6 C -0.096 4.096 7 C -0.154 4.154 8 C 0.084 3.916 9 F -0.145 7.145 10 C -0.139 4.139 11 S 2.604 3.396 12 O -0.969 6.969 13 O -0.944 6.944 14 C -0.553 4.553 15 C 0.043 3.957 16 C -0.514 4.514 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.209 4.209 25 C -0.141 4.141 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.263 0.737 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 10.526 -5.944 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.845 5.845 3 C 0.038 3.962 4 C -0.081 4.081 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.173 4.173 8 C 0.065 3.935 9 F -0.124 7.124 10 C -0.159 4.159 11 S 2.702 3.298 12 O -0.959 6.959 13 O -0.934 6.934 14 C -0.686 4.686 15 C 0.040 3.960 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.246 4.246 25 C -0.181 4.181 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.491 10.142 -6.553 14.210 hybrid contribution 0.556 0.299 0.398 0.747 sum -6.935 10.441 -6.155 13.964 Atomic orbital electron populations 1.21390 0.79183 1.02523 1.01886 1.57993 1.14811 1.21359 1.90352 1.20164 0.98121 0.85896 0.92016 1.20192 0.94018 0.96201 0.97660 1.21699 0.98399 0.98111 0.93964 1.21098 0.98529 0.96239 0.95517 1.21157 0.94426 1.01118 1.00622 1.17652 0.88301 0.94598 0.92955 1.91475 1.63344 1.71133 1.86452 1.20991 1.00580 1.00213 0.94101 1.05408 0.73412 0.72094 0.78865 1.93495 1.65374 1.62019 1.75041 1.93489 1.43291 1.82136 1.74497 1.30025 1.07169 1.09614 1.21825 1.18303 0.93717 0.83472 1.00491 1.20554 0.87934 1.46171 1.00470 0.91290 1.24947 0.99300 0.93807 0.94212 1.69989 1.31120 1.37376 1.12531 0.86525 0.84003 0.78431 0.79177 1.19222 1.20618 1.20863 1.23200 0.97581 1.01328 1.02482 1.22558 1.01454 1.04154 0.89891 0.92872 0.91114 0.91473 0.88310 0.89571 0.82862 0.84886 0.85096 0.85025 0.84826 0.88499 0.92765 0.90730 0.89510 0.89562 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 10.24 59.85 0.61 1.75 16 2 N -1.01 -14.78 3.10 -123.05 -0.38 -15.16 16 3 C 0.16 2.09 5.43 -5.19 -0.03 2.06 16 4 C -0.08 -1.05 5.46 -104.64 -0.57 -1.62 16 5 C -0.10 -1.47 9.11 -39.58 -0.36 -1.83 16 6 C -0.10 -1.18 10.04 -39.60 -0.40 -1.58 16 7 C -0.15 -1.81 10.03 -39.52 -0.40 -2.20 16 8 C 0.08 1.05 7.30 -39.42 -0.29 0.77 16 9 F -0.15 -1.84 17.27 2.25 0.04 -1.80 16 10 C -0.14 -1.69 9.68 -39.51 -0.38 -2.08 16 11 S 2.60 50.53 5.06 -107.50 -0.54 49.98 16 12 O -0.97 -20.91 17.09 -57.54 -0.98 -21.89 16 13 O -0.94 -20.44 14.50 -57.54 -0.83 -21.28 16 14 C -0.55 -11.17 6.03 37.16 0.22 -10.95 16 15 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 16 C -0.51 -13.64 8.18 -34.44 -0.28 -13.92 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C 0.08 2.18 5.38 -17.82 -0.10 2.08 16 19 N -0.87 -23.38 12.98 55.43 0.72 -22.66 16 20 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.21 -4.50 9.96 -26.69 -0.27 -4.77 16 25 C -0.14 -3.16 9.49 -26.69 -0.25 -3.41 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 28 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 29 H 0.10 1.29 7.55 -51.93 -0.39 0.90 16 30 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 31 H 0.15 2.42 6.50 -52.48 -0.34 2.07 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 2.78 8.14 -51.93 -0.42 2.36 16 36 H 0.10 1.66 8.09 -51.92 -0.42 1.24 16 37 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -31.27 363.47 -9.95 -41.22 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.73 Total: 5.21 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -2.69 Total: -34.89 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.34 Total: -37.82 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.82 Total: -43.17 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.54 Total: 49.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.27 -9.95 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346446987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.898 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds