Wall clock time and date at job start Tue Mar 31 2020 15:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99875 * 2 1 4 4 C 1.50699 * 109.47362 * 275.00094 * 3 2 1 5 5 C 1.38260 * 119.98985 * 269.72927 * 4 3 2 6 6 C 1.38222 * 120.05355 * 179.72148 * 5 4 3 7 7 C 1.38215 * 120.02283 * 0.55079 * 6 5 4 8 8 C 1.38436 * 119.97729 * 359.72125 * 7 6 5 9 9 F 1.35102 * 120.03168 * 180.02562 * 8 7 6 10 10 C 1.38179 * 119.98367 * 89.99643 * 4 3 2 11 11 S 1.65591 * 119.99920 * 180.02562 * 2 1 3 12 12 O 1.42093 * 104.28114 * 26.07239 * 11 2 1 13 13 O 1.42107 * 104.27896 * 153.92888 * 11 2 1 14 14 C 1.81405 * 104.45210 * 269.99689 * 11 2 1 15 15 C 1.53002 * 109.47216 * 173.98414 * 14 11 2 16 16 C 1.50697 * 115.54861 * 65.20248 * 15 14 11 17 17 H 1.08001 * 119.99906 * 264.77703 * 16 15 14 18 18 C 1.37871 * 120.00153 * 84.78719 * 16 15 14 19 19 N 1.31518 * 119.99857 * 352.22206 * 18 16 15 20 20 Si 1.86800 * 120.00054 * 172.22933 * 18 16 15 21 21 H 1.48499 * 109.47211 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47426 * 119.99966 * 20 18 16 23 23 H 1.48501 * 109.46752 * 239.99641 * 20 18 16 24 24 C 1.53005 * 117.49546 * 279.53070 * 15 14 11 25 25 C 1.52999 * 117.49553 * 210.87462 * 15 14 11 26 26 H 1.08994 * 109.47579 * 89.99576 * 1 2 3 27 27 H 1.09003 * 109.46798 * 209.99989 * 1 2 3 28 28 H 1.08999 * 109.47138 * 329.99679 * 1 2 3 29 29 H 1.09000 * 109.46847 * 154.99835 * 3 2 1 30 30 H 1.09003 * 109.46782 * 35.00303 * 3 2 1 31 31 H 1.08004 * 119.97386 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.98740 * 180.27149 * 6 5 4 33 33 H 1.08007 * 120.01393 * 179.74794 * 7 6 5 34 34 H 1.08004 * 120.01675 * 359.97438 * 10 4 3 35 35 H 1.08996 * 109.47037 * 293.98437 * 14 11 2 36 36 H 1.09000 * 109.46951 * 53.98215 * 14 11 2 37 37 H 0.96999 * 119.99517 * 185.02355 * 19 18 16 38 38 H 1.08999 * 117.49982 * 0.02562 * 24 15 14 39 39 H 1.08997 * 117.49062 * 145.02362 * 24 15 14 40 40 H 1.09003 * 117.49403 * 214.97658 * 25 15 14 41 41 H 1.08998 * 117.50009 * 359.96881 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 6 3.4434 1.4018 -2.1670 6 6 3.5738 1.8522 -3.4672 7 6 2.6083 2.6764 -4.0137 8 6 1.5073 3.0461 -3.2603 9 9 0.5626 3.8513 -3.7936 10 6 1.3748 2.5896 -1.9596 11 16 2.2930 -1.4341 -0.0006 12 8 1.3970 -2.3558 -0.6063 13 8 3.5395 -1.1188 -0.6057 14 6 2.5194 -1.8269 1.7558 15 6 3.1467 -3.2158 1.8911 16 6 4.5460 -3.3526 1.3486 17 1 4.7026 -3.7208 0.3454 18 6 5.6262 -3.0081 2.1330 19 7 5.4351 -2.4184 3.2929 20 14 7.3612 -3.3787 1.5481 21 1 7.3050 -4.0418 0.2206 22 1 8.1274 -2.1115 1.4370 23 1 8.0304 -4.2779 2.5222 24 6 2.2184 -4.4255 1.7646 25 6 2.7865 -4.0358 3.1315 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 3.1858 1.1177 0.4343 30 1 1.6501 2.0043 0.5895 31 1 4.2008 0.7617 -1.7391 32 1 4.4328 1.5637 -4.0548 33 1 2.7124 3.0316 -5.0284 34 1 0.5160 2.8770 -1.3711 35 1 3.1756 -1.0859 2.2122 36 1 1.5523 -1.8144 2.2585 37 1 6.1949 -2.1104 3.8113 38 1 1.1610 -4.2319 1.5846 39 1 2.6201 -5.3204 1.2894 40 1 3.5616 -4.6746 3.5550 41 1 2.1031 -3.5856 3.8515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346446987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:25 Heat of formation + Delta-G solvation = -82.151521 kcal Electronic energy + Delta-G solvation = -26320.179509 eV Core-core repulsion = 22434.933322 eV Total energy + Delta-G solvation = -3885.246188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87598 -40.20724 -38.56081 -37.93658 -37.14492 -36.64278 -34.07504 -32.56797 -31.44095 -29.83232 -28.34164 -27.49678 -25.71246 -23.67549 -22.99568 -22.58357 -21.38108 -19.78085 -18.60968 -18.39216 -18.16361 -17.27506 -17.06237 -17.03522 -16.83394 -16.58374 -16.55097 -15.70465 -15.52307 -15.32969 -14.89138 -14.73898 -14.38832 -13.89846 -13.76431 -13.72371 -13.60259 -13.26686 -13.09844 -13.05401 -12.86362 -12.84700 -12.72985 -12.45916 -12.38649 -12.24684 -12.17869 -12.02436 -11.88357 -11.52835 -10.86650 -10.54791 -10.21696 -9.99369 -9.78218 -9.62321 -8.18423 -6.32660 -0.54417 0.18263 0.25543 1.37744 1.41627 1.52327 1.97311 2.40440 2.65930 3.03901 3.09367 3.24398 3.37091 3.43638 3.72067 3.73535 3.92263 4.06957 4.16444 4.27677 4.34250 4.40892 4.50942 4.53413 4.59434 4.64338 4.74164 4.84359 4.91798 4.96974 4.98533 5.00705 5.13282 5.16293 5.21321 5.42216 5.47295 5.57140 5.58209 5.70183 5.73203 5.96944 6.23797 6.73565 7.39692 8.88898 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.004157 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.882478 B = 6733.297207 C = 7755.876244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.001 6.001 3 C 0.157 3.843 4 C -0.089 4.089 5 C -0.129 4.129 6 C -0.101 4.101 7 C -0.152 4.152 8 C 0.074 3.926 9 F -0.145 7.145 10 C -0.134 4.134 11 S 2.617 3.383 12 O -0.995 6.995 13 O -0.976 6.976 14 C -0.552 4.552 15 C 0.012 3.988 16 C -0.531 4.531 17 H 0.048 0.952 18 C 0.045 3.955 19 N -0.892 5.892 20 Si 0.935 3.065 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.199 4.199 25 C -0.140 4.140 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 12.036 -5.941 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.839 5.839 3 C 0.032 3.968 4 C -0.091 4.091 5 C -0.148 4.148 6 C -0.119 4.119 7 C -0.171 4.171 8 C 0.055 3.945 9 F -0.124 7.124 10 C -0.154 4.154 11 S 2.715 3.285 12 O -0.985 6.985 13 O -0.966 6.966 14 C -0.685 4.685 15 C 0.009 3.991 16 C -0.568 4.568 17 H 0.066 0.934 18 C -0.158 4.158 19 N -0.528 5.528 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.236 4.236 25 C -0.179 4.179 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.061 11.636 -6.543 16.134 hybrid contribution 1.000 -0.127 0.340 1.064 sum -8.061 11.509 -6.202 15.359 Atomic orbital electron populations 1.21726 0.77042 1.04750 1.02576 1.57575 1.15996 1.20305 1.90013 1.20429 0.98247 0.85697 0.92425 1.20255 0.94119 0.96794 0.97913 1.21711 0.98844 0.98955 0.95247 1.21294 0.99398 0.96180 0.95003 1.21413 0.93744 1.00287 1.01621 1.17846 0.88528 0.94744 0.93381 1.91477 1.63341 1.71134 1.86470 1.21190 1.00780 0.99231 0.94156 1.04709 0.72818 0.72749 0.78224 1.93451 1.65796 1.63845 1.75425 1.93453 1.45264 1.82855 1.75023 1.29919 1.08281 1.07173 1.23097 1.18440 0.93267 0.85761 1.01590 1.20693 0.90132 1.46231 0.99761 0.93395 1.25473 1.01874 0.93876 0.94530 1.70028 1.31857 1.37931 1.13013 0.85862 0.81036 0.78495 0.78593 1.19826 1.19993 1.19976 1.23240 0.98454 1.00251 1.01639 1.22517 1.01356 1.03720 0.90282 0.93028 0.90870 0.87344 0.89457 0.85385 0.85260 0.83288 0.82794 0.82466 0.85806 0.85294 0.92542 0.88402 0.90078 0.91605 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 10.24 127.77 1.31 3.03 16 2 N -1.00 -27.43 3.10 -543.21 -1.68 -29.11 16 3 C 0.16 3.71 5.43 85.63 0.47 4.18 16 4 C -0.09 -2.26 5.46 -19.87 -0.11 -2.37 16 5 C -0.13 -3.70 9.11 22.27 0.20 -3.49 16 6 C -0.10 -2.42 10.04 22.26 0.22 -2.19 16 7 C -0.15 -3.28 10.03 22.31 0.22 -3.06 16 8 C 0.07 1.69 7.30 22.38 0.16 1.86 16 9 F -0.15 -3.32 17.27 44.97 0.78 -2.55 16 10 C -0.13 -2.92 9.68 22.31 0.22 -2.71 16 11 S 2.62 100.85 5.06 -56.49 -0.29 100.57 16 12 O -0.99 -42.53 17.09 -127.65 -2.18 -44.71 16 13 O -0.98 -43.48 14.50 -127.65 -1.85 -45.33 16 14 C -0.55 -21.88 6.03 71.98 0.43 -21.44 16 15 C 0.01 0.55 1.32 -52.93 -0.07 0.48 16 16 C -0.53 -28.77 8.18 25.60 0.21 -28.56 16 17 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 18 C 0.05 2.43 5.38 84.65 0.46 2.89 16 19 N -0.89 -47.98 12.98 21.45 0.28 -47.70 16 20 Si 0.93 43.14 29.55 68.60 2.03 45.17 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 24 C -0.20 -8.43 9.96 30.62 0.30 -8.13 16 25 C -0.14 -6.16 9.49 30.62 0.29 -5.87 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.48 7.79 -2.39 -0.02 1.47 16 28 H 0.11 1.35 7.94 -2.39 -0.02 1.33 16 29 H 0.09 2.27 7.55 -2.39 -0.02 2.25 16 30 H 0.13 1.94 7.91 -2.39 -0.02 1.92 16 31 H 0.13 4.31 6.50 -2.91 -0.02 4.29 16 32 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.12 5.14 8.14 -2.39 -0.02 5.12 16 36 H 0.13 4.12 8.09 -2.39 -0.02 4.10 16 37 H 0.27 13.54 8.32 -92.71 -0.77 12.76 16 38 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -68.09 363.47 2.43 -65.67 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.03 Total: 23.40 kcal Atomic # 6 Polarization: -69.71 SS G_CDS: 4.32 Total: -65.39 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -1.41 Total: -76.81 kcal Atomic # 8 Polarization: -86.01 SS G_CDS: -4.03 Total: -90.05 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 100.85 SS G_CDS: -0.29 Total: 100.57 kcal Total: -68.09 2.43 -65.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346446987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.486 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds