Wall clock time and date at job start Tue Mar 31 2020 15:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00114 * 2 1 4 4 C 1.50695 * 109.47030 * 83.14487 * 3 2 1 5 5 C 1.38223 * 120.01283 * 98.84017 * 4 3 2 6 6 C 1.38223 * 120.02545 * 180.27595 * 5 4 3 7 7 C 1.38273 * 120.05226 * 359.48927 * 6 5 4 8 8 C 1.38179 * 120.02279 * 0.50832 * 7 6 5 9 9 C 1.38443 * 120.01432 * 278.85748 * 4 3 2 10 10 F 1.35101 * 120.02264 * 359.96411 * 9 4 3 11 11 S 1.65597 * 119.99766 * 180.02562 * 2 1 3 12 12 O 1.42097 * 104.28209 * 30.73791 * 11 2 1 13 13 O 1.42102 * 104.27775 * 158.60112 * 11 2 1 14 14 C 1.81406 * 104.44857 * 274.66897 * 11 2 1 15 15 C 1.52994 * 109.47318 * 172.46388 * 14 11 2 16 16 C 1.50700 * 115.55165 * 66.02569 * 15 14 11 17 17 H 1.07991 * 120.00285 * 264.63658 * 16 15 14 18 18 C 1.37883 * 120.00100 * 84.63281 * 16 15 14 19 19 N 1.31516 * 119.99580 * 2.01201 * 18 16 15 20 20 Si 1.86797 * 120.00221 * 182.00432 * 18 16 15 21 21 H 1.48495 * 109.47066 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46977 * 120.00308 * 20 18 16 23 23 H 1.48495 * 109.47319 * 239.99953 * 20 18 16 24 24 C 1.53001 * 117.49813 * 280.36060 * 15 14 11 25 25 C 1.53000 * 117.49936 * 211.69793 * 15 14 11 26 26 H 1.09003 * 109.47697 * 89.99653 * 1 2 3 27 27 H 1.09003 * 109.46967 * 210.00272 * 1 2 3 28 28 H 1.09004 * 109.46913 * 329.99847 * 1 2 3 29 29 H 1.09007 * 109.46807 * 323.14213 * 3 2 1 30 30 H 1.08995 * 109.47089 * 203.14764 * 3 2 1 31 31 H 1.07993 * 119.98603 * 359.97438 * 5 4 3 32 32 H 1.07995 * 119.97301 * 179.72336 * 6 5 4 33 33 H 1.07989 * 119.98634 * 180.25705 * 7 6 5 34 34 H 1.07994 * 120.00878 * 179.76505 * 8 7 6 35 35 H 1.09003 * 109.46824 * 292.46290 * 14 11 2 36 36 H 1.08995 * 109.47292 * 52.45972 * 14 11 2 37 37 H 0.97004 * 119.99659 * 185.01732 * 19 18 16 38 38 H 1.09005 * 117.49794 * 359.97438 * 24 15 14 39 39 H 1.08994 * 117.49873 * 145.02099 * 24 15 14 40 40 H 1.08998 * 117.49683 * 214.97748 * 25 15 14 41 41 H 1.09000 * 117.49859 * 359.97295 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3018 1.7885 1.4106 5 6 3.4596 1.5864 2.1381 6 6 3.5535 2.0580 3.4340 7 6 2.4935 2.7417 4.0005 8 6 1.3351 2.9450 3.2751 9 6 1.2379 2.4683 1.9786 10 9 0.1060 2.6668 1.2683 11 16 2.2930 -1.4341 -0.0006 12 8 1.4432 -2.3292 -0.7049 13 8 3.5786 -1.0964 -0.5029 14 6 2.3954 -1.8984 1.7500 15 6 2.9784 -3.3078 1.8706 16 6 4.4122 -3.4578 1.4317 17 1 4.6382 -3.7887 0.4289 18 6 5.4357 -3.1727 2.3106 19 7 5.1608 -2.8079 3.5439 20 14 7.2126 -3.3047 1.7496 21 1 7.2523 -3.7306 0.3276 22 1 7.8750 -1.9830 1.8888 23 1 7.9228 -4.3049 2.5864 24 6 2.0356 -4.4862 1.6189 25 6 2.5041 -4.1707 3.0417 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6670 1.9945 -0.6165 30 1 3.1975 1.1109 -0.4040 31 1 4.2894 1.0555 1.6955 32 1 4.4568 1.8957 4.0031 33 1 2.5695 3.1134 5.0115 34 1 0.5059 3.4757 3.7191 35 1 3.0387 -1.1929 2.2759 36 1 1.3984 -1.8787 2.1901 37 1 5.8762 -2.5372 4.1404 38 1 0.9999 -4.2573 1.3677 39 1 2.4525 -5.3701 1.1363 40 1 3.2290 -4.8471 3.4944 41 1 1.7770 -3.7341 3.7264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346502172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:29 Heat of formation + Delta-G solvation = -61.763846 kcal Electronic energy + Delta-G solvation = -27173.278910 eV Core-core repulsion = 23288.916798 eV Total energy + Delta-G solvation = -3884.362112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.99930 -39.12340 -36.76860 -36.33538 -36.08942 -35.08145 -32.04699 -31.63436 -30.46010 -28.19947 -27.23534 -25.50970 -24.64994 -22.73112 -21.53415 -21.18227 -19.52376 -18.35333 -17.64196 -17.10039 -16.55690 -16.25239 -16.13742 -15.96614 -15.29508 -15.10116 -14.69786 -14.25756 -14.13539 -13.77759 -13.77519 -13.35497 -13.18686 -12.94826 -12.53580 -12.38237 -11.99245 -11.94369 -11.79598 -11.55663 -11.29931 -11.19831 -11.07398 -10.99243 -10.97076 -10.88647 -10.59198 -10.44386 -10.11265 -9.66081 -9.08266 -9.01528 -8.90384 -8.64612 -8.54567 -8.05973 -6.14913 -4.26327 0.92908 1.18259 1.22141 3.26294 3.26684 3.34457 3.43307 3.66366 4.21297 4.35962 4.52272 4.69008 4.70397 4.84224 4.93878 5.07390 5.12826 5.21475 5.25290 5.31104 5.49549 5.61131 5.65427 5.80382 5.85223 5.92349 5.94429 6.07050 6.09482 6.16449 6.26940 6.37080 6.40291 6.47097 6.62466 6.73561 6.78284 6.89259 7.01016 7.23681 7.44358 7.78100 8.19684 8.79827 9.44869 10.92394 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.005835 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.677666 B = 4797.342107 C = 5753.220853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.008 6.008 3 C 0.156 3.844 4 C -0.143 4.143 5 C -0.077 4.077 6 C -0.120 4.120 7 C -0.091 4.091 8 C -0.159 4.159 9 C 0.107 3.893 10 F -0.137 7.137 11 S 2.602 3.398 12 O -0.967 6.967 13 O -0.950 6.950 14 C -0.550 4.550 15 C 0.040 3.960 16 C -0.512 4.512 17 H 0.068 0.932 18 C 0.081 3.919 19 N -0.872 5.872 20 Si 0.889 3.111 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.210 4.210 25 C -0.135 4.135 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 12.308 0.634 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.842 5.842 3 C 0.030 3.970 4 C -0.146 4.146 5 C -0.096 4.096 6 C -0.138 4.138 7 C -0.109 4.109 8 C -0.178 4.178 9 C 0.087 3.913 10 F -0.116 7.116 11 S 2.700 3.300 12 O -0.958 6.958 13 O -0.940 6.940 14 C -0.683 4.683 15 C 0.038 3.962 16 C -0.549 4.549 17 H 0.086 0.914 18 C -0.124 4.124 19 N -0.508 5.508 20 Si 0.716 3.284 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.209 1.209 24 C -0.247 4.247 25 C -0.174 4.174 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.194 11.907 -0.049 13.912 hybrid contribution 0.500 0.252 0.651 0.859 sum -6.695 12.159 0.603 13.893 Atomic orbital electron populations 1.21601 0.79136 1.03262 1.02124 1.57894 1.14864 1.21136 1.90348 1.20155 0.99350 0.85880 0.91577 1.20479 0.94048 1.01099 0.98935 1.21273 0.97092 0.96997 0.94188 1.21293 0.99482 0.97784 0.95273 1.21037 0.92445 0.97739 0.99704 1.21084 0.99960 1.03490 0.93235 1.17506 0.82772 1.00429 0.90565 1.91399 1.48948 1.93085 1.78168 1.05423 0.73403 0.72268 0.78905 1.93496 1.67742 1.63520 1.71014 1.93503 1.40069 1.81922 1.78515 1.30015 1.07026 1.09476 1.21790 1.18301 0.93394 0.83221 1.01328 1.20576 0.87822 1.47583 0.98935 0.91425 1.24942 0.99139 0.93995 0.94276 1.70033 1.32681 1.43170 1.04905 0.86567 0.84491 0.77974 0.79414 1.19163 1.20543 1.20935 1.23200 0.98236 1.01903 1.01352 1.22522 1.01311 1.03958 0.89608 0.92610 0.91579 0.90405 0.89441 0.87088 0.84010 0.84963 0.85164 0.85014 0.85092 0.88522 0.92903 0.90804 0.89546 0.89307 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.22 59.85 0.61 1.77 16 2 N -1.01 -16.31 3.10 -123.05 -0.38 -16.69 16 3 C 0.16 2.23 5.53 -5.20 -0.03 2.21 16 4 C -0.14 -1.99 5.45 -104.55 -0.57 -2.56 16 5 C -0.08 -1.09 9.29 -39.59 -0.37 -1.46 16 6 C -0.12 -1.51 10.04 -39.57 -0.40 -1.91 16 7 C -0.09 -0.99 10.04 -39.59 -0.40 -1.39 16 8 C -0.16 -1.78 10.03 -39.51 -0.40 -2.18 16 9 C 0.11 1.37 7.09 -39.42 -0.28 1.09 16 10 F -0.14 -1.72 14.03 2.25 0.03 -1.69 16 11 S 2.60 53.75 5.10 -107.50 -0.55 53.20 16 12 O -0.97 -21.80 17.27 -57.54 -0.99 -22.79 16 13 O -0.95 -21.97 16.19 -57.54 -0.93 -22.90 16 14 C -0.55 -11.65 6.03 37.15 0.22 -11.43 16 15 C 0.04 0.97 1.38 -155.66 -0.21 0.76 16 16 C -0.51 -13.84 8.31 -34.44 -0.29 -14.13 16 17 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 18 C 0.08 2.17 5.43 -17.82 -0.10 2.07 16 19 N -0.87 -23.28 12.72 55.43 0.71 -22.58 16 20 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.21 -4.67 9.96 -26.69 -0.27 -4.93 16 25 C -0.13 -3.10 9.23 -26.69 -0.25 -3.34 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.88 7.91 -51.93 -0.41 0.47 16 28 H 0.08 0.95 5.05 -51.93 -0.26 0.68 16 29 H 0.09 1.06 7.89 -51.92 -0.41 0.65 16 30 H 0.11 1.64 6.60 -51.93 -0.34 1.30 16 31 H 0.14 2.13 8.04 -52.49 -0.42 1.70 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.13 2.84 7.76 -51.92 -0.40 2.44 16 36 H 0.10 1.79 8.09 -51.93 -0.42 1.37 16 37 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -31.32 359.65 -10.03 -41.35 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.60 Total: 6.14 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -2.71 Total: -35.43 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.32 Total: -39.27 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.93 Total: -45.70 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.03 Total: -1.69 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.55 Total: 53.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.32 -10.03 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346502172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.413 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds