Wall clock time and date at job start Tue Mar 31 2020 15:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21232 * 120.00446 * 2 1 4 4 C 1.47310 * 119.99639 * 179.97438 * 2 1 3 5 5 C 1.39952 * 119.99997 * 6.27430 * 4 2 1 6 6 C 1.37583 * 120.05184 * 179.97438 * 5 4 2 7 7 C 1.39782 * 120.05497 * 359.97417 * 6 5 4 8 8 C 1.47679 * 120.00194 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00035 * 136.62537 * 8 7 6 10 10 N 1.34773 * 120.00164 * 316.63097 * 8 7 6 11 11 C 1.36744 * 120.00033 * 3.72292 * 10 8 7 12 12 H 1.08005 * 120.00446 * 326.70534 * 11 10 8 13 13 C 1.39107 * 120.00390 * 146.69942 * 11 10 8 14 14 N 1.31292 * 120.00465 * 161.52555 * 13 11 10 15 15 Si 1.86806 * 119.99467 * 341.52989 * 13 11 10 16 16 H 1.48493 * 109.47313 * 89.06166 * 15 13 11 17 17 H 1.48505 * 109.47027 * 209.06400 * 15 13 11 18 18 H 1.48499 * 109.47150 * 329.05794 * 15 13 11 19 19 C 1.39697 * 120.00149 * 183.73176 * 10 8 7 20 20 C 1.38981 * 120.08756 * 120.94935 * 19 10 8 21 21 C 1.38073 * 119.92258 * 179.78920 * 20 19 10 22 22 C 1.38307 * 120.07998 * 0.46415 * 21 20 19 23 23 C 1.38311 * 120.16386 * 359.79106 * 22 21 20 24 24 C 1.38083 * 120.07568 * 359.97438 * 23 22 21 25 25 C 1.39934 * 120.00018 * 0.02562 * 7 6 5 26 26 F 1.35093 * 120.03019 * 179.97438 * 25 7 6 27 27 C 1.38057 * 119.94465 * 0.25284 * 25 7 6 28 28 H 1.08993 * 109.47304 * 185.51527 * 1 2 3 29 29 H 1.09007 * 109.46664 * 305.51711 * 1 2 3 30 30 H 1.09001 * 109.46856 * 65.51078 * 1 2 3 31 31 H 1.08004 * 119.97543 * 359.96763 * 5 4 2 32 32 H 1.08004 * 119.96990 * 179.97438 * 6 5 4 33 33 H 0.96996 * 119.99907 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.03317 * 359.97438 * 20 19 10 35 35 H 1.08001 * 119.96217 * 180.25164 * 21 20 19 36 36 H 1.08005 * 119.92029 * 179.76302 * 22 21 20 37 37 H 1.07998 * 119.96247 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.03564 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.02938 * 179.72969 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0499 0.0000 4 6 2.2435 -1.2758 0.0006 5 6 1.5500 -2.4842 -0.1313 6 6 2.2368 -3.6763 -0.1315 7 6 3.6284 -3.6825 -0.0004 8 6 4.3644 -4.9629 -0.0001 9 8 5.3950 -5.0718 -0.6362 10 7 3.8938 -6.0105 0.7050 11 6 2.6964 -5.9126 1.3582 12 1 2.3858 -4.9671 1.7778 13 6 1.8781 -7.0307 1.4821 14 7 0.9302 -7.0532 2.3902 15 14 2.1281 -8.5003 0.3563 16 1 3.1079 -9.4326 0.9695 17 1 0.8331 -9.2007 0.1617 18 1 2.6419 -8.0359 -0.9573 19 6 4.6292 -7.1965 0.7688 20 6 5.0453 -7.6931 1.9984 21 6 5.7683 -8.8679 2.0578 22 6 6.0868 -9.5454 0.8949 23 6 5.6790 -9.0516 -0.3310 24 6 4.9515 -7.8799 -0.3978 25 6 4.3241 -2.4756 0.1316 26 9 5.6691 -2.4809 0.2589 27 6 3.6344 -1.2797 0.1375 28 1 -0.3633 -1.0228 0.0988 29 1 -0.3633 0.5971 0.8365 30 1 -0.3633 0.4260 -0.9352 31 1 0.4747 -2.4809 -0.2330 32 1 1.7002 -4.6081 -0.2330 33 1 0.3599 -7.8330 2.4768 34 1 4.8009 -7.1621 2.9065 35 1 6.0885 -9.2564 3.0133 36 1 6.6557 -10.4621 0.9441 37 1 5.9298 -9.5831 -1.2371 38 1 4.6337 -7.4947 -1.3554 39 1 4.1696 -0.3476 0.2438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346643789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:55 Heat of formation + Delta-G solvation = -38.563888 kcal Electronic energy + Delta-G solvation = -27391.679072 eV Core-core repulsion = 23372.879035 eV Total energy + Delta-G solvation = -4018.800037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.52629 -40.28345 -39.67775 -38.21329 -37.12812 -35.15438 -32.33383 -31.97485 -30.96223 -30.42017 -29.45600 -28.82196 -25.46986 -24.52246 -22.67523 -22.03922 -21.96511 -20.19514 -19.49309 -18.37617 -17.28963 -16.80652 -16.33851 -16.02185 -15.66314 -15.44889 -15.29526 -14.91763 -14.80024 -14.64012 -14.60242 -13.92083 -13.57534 -13.37327 -13.27560 -12.95960 -12.80749 -12.51711 -12.48332 -12.38180 -12.32293 -12.02356 -11.77502 -11.22052 -11.12365 -11.05767 -10.75423 -10.70697 -10.13241 -9.85561 -9.51769 -9.20348 -8.79167 -8.61055 -8.54246 -8.33863 -7.74660 -6.73718 -4.35789 0.49805 1.41968 1.79894 1.93700 2.28997 3.04713 3.16752 3.20982 3.35053 3.76086 3.91676 4.00787 4.03361 4.31036 4.56307 4.78044 4.89767 4.97955 5.04605 5.26946 5.30339 5.40058 5.41471 5.44188 5.47468 5.61186 5.75562 5.95459 5.96259 6.09378 6.15221 6.19999 6.26811 6.44666 6.52670 6.54423 6.82660 6.97923 6.99061 7.02088 7.14147 7.44406 7.48735 7.72912 7.99857 8.57098 8.97111 9.27356 10.32174 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.004369 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.702469 B = 6407.681917 C = 7483.930188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.400 3.600 3 O -0.463 6.463 4 C -0.142 4.142 5 C -0.099 4.099 6 C -0.044 4.044 7 C -0.095 4.095 8 C 0.515 3.485 9 O -0.560 6.560 10 N -0.406 5.406 11 C -0.364 4.364 12 H 0.118 0.882 13 C 0.082 3.918 14 N -0.843 5.843 15 Si 0.859 3.141 16 H -0.256 1.256 17 H -0.289 1.289 18 H -0.254 1.254 19 C 0.152 3.848 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.120 4.120 25 C 0.123 3.877 26 F -0.125 7.125 27 C -0.113 4.113 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.280 0.720 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 3.044 -2.866 4.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.279 3.721 3 O -0.339 6.339 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.062 4.062 7 C -0.099 4.099 8 C 0.306 3.694 9 O -0.442 6.442 10 N -0.120 5.120 11 C -0.489 4.489 12 H 0.135 0.865 13 C -0.129 4.129 14 N -0.475 5.475 15 Si 0.685 3.315 16 H -0.181 1.181 17 H -0.216 1.216 18 H -0.179 1.179 19 C 0.059 3.941 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.158 4.158 23 C -0.137 4.137 24 C -0.140 4.140 25 C 0.103 3.897 26 F -0.104 7.104 27 C -0.132 4.132 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.933 3.466 -3.053 4.712 hybrid contribution 0.052 -0.965 -0.240 0.996 sum -0.881 2.501 -3.293 4.228 Atomic orbital electron populations 1.22243 0.93440 1.05350 1.04803 1.22530 0.91749 0.87320 0.70490 1.90517 1.72205 1.34386 1.36758 1.20346 0.93400 0.95221 1.05358 1.21488 1.00504 0.90840 0.98936 1.21677 0.91887 0.99667 0.92970 1.20207 0.94933 0.92603 1.02204 1.18081 0.85910 0.84566 0.80869 1.90742 1.25463 1.84197 1.43836 1.41221 1.18451 1.09059 1.43244 1.19271 0.92920 1.00570 1.36140 0.86478 1.25242 0.94651 0.97805 0.95191 1.69665 1.18735 1.30816 1.28309 0.87128 0.78058 0.83286 0.83070 1.18089 1.21561 1.17864 1.17735 0.94232 0.88738 0.93358 1.21165 0.97389 0.96960 0.97543 1.20912 0.99128 0.95325 0.98065 1.20978 1.01862 1.00245 0.92699 1.20872 0.98988 0.96233 0.97650 1.21200 0.99665 0.95077 0.98087 1.17547 0.77542 0.93045 1.01590 1.91539 1.28729 1.97225 1.92875 1.21134 0.93923 0.97091 1.01066 0.89241 0.88815 0.88677 0.84044 0.81830 0.90906 0.85335 0.86264 0.86630 0.86393 0.86059 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 10.16 36.01 0.37 -1.34 16 2 C 0.40 5.08 7.22 -30.62 -0.22 4.86 16 3 O -0.46 -7.22 17.09 5.60 0.10 -7.13 16 4 C -0.14 -2.02 5.87 -105.00 -0.62 -2.63 16 5 C -0.10 -1.36 9.38 -39.18 -0.37 -1.73 16 6 C -0.04 -0.75 7.68 -39.24 -0.30 -1.05 16 7 C -0.10 -1.90 5.21 -104.83 -0.55 -2.45 16 8 C 0.52 11.91 6.94 -12.41 -0.09 11.82 16 9 O -0.56 -14.16 15.58 5.28 0.08 -14.08 16 10 N -0.41 -9.42 2.42 -60.04 -0.14 -9.56 16 11 C -0.36 -8.57 7.01 -15.04 -0.11 -8.68 16 12 H 0.12 2.83 6.38 -52.48 -0.33 2.50 16 13 C 0.08 1.97 5.27 -17.46 -0.09 1.88 16 14 N -0.84 -21.04 13.95 55.50 0.77 -20.27 16 15 Si 0.86 19.24 23.69 -169.99 -4.03 15.21 16 16 H -0.26 -5.80 6.87 56.52 0.39 -5.41 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.25 -5.68 5.84 56.52 0.33 -5.35 16 19 C 0.15 3.40 2.45 -83.72 -0.21 3.20 16 20 C -0.11 -2.30 8.80 -39.37 -0.35 -2.65 16 21 C -0.12 -2.05 10.04 -39.62 -0.40 -2.45 16 22 C -0.14 -2.33 10.04 -39.53 -0.40 -2.73 16 23 C -0.12 -2.14 10.01 -39.61 -0.40 -2.54 16 24 C -0.12 -2.55 5.62 -39.36 -0.22 -2.77 16 25 C 0.12 2.32 7.24 -39.01 -0.28 2.04 16 26 F -0.13 -2.55 16.32 2.25 0.04 -2.52 16 27 C -0.11 -1.82 9.56 -39.08 -0.37 -2.19 16 28 H 0.09 0.64 5.71 -51.93 -0.30 0.34 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.14 1.42 6.03 -52.48 -0.32 1.11 16 32 H 0.16 2.92 6.46 -52.48 -0.34 2.58 16 33 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.13 2.66 8.06 -52.49 -0.42 2.23 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.62 7.54 -52.49 -0.40 2.22 16 39 H 0.14 2.15 7.65 -52.48 -0.40 1.74 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -29.65 333.97 -6.58 -36.23 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -3.84 Total: 6.47 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -4.59 Total: -9.40 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.63 Total: -29.83 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.03 Total: 15.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.65 -6.58 -36.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346643789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.331 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds