Wall clock time and date at job start Tue Mar 31 2020 15:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21232 * 120.00446 * 2 1 4 4 C 1.47310 * 119.99639 * 179.97438 * 2 1 3 5 5 C 1.39952 * 119.99997 * 6.27430 * 4 2 1 6 6 C 1.37583 * 120.05184 * 179.97438 * 5 4 2 7 7 C 1.39782 * 120.05497 * 359.97417 * 6 5 4 8 8 C 1.47679 * 120.00194 * 179.97438 * 7 6 5 9 9 O 1.21594 * 120.00035 * 136.62537 * 8 7 6 10 10 N 1.34773 * 120.00164 * 316.63097 * 8 7 6 11 11 C 1.36744 * 120.00033 * 3.72292 * 10 8 7 12 12 H 1.08005 * 120.00446 * 326.70534 * 11 10 8 13 13 C 1.39107 * 120.00390 * 146.69942 * 11 10 8 14 14 N 1.31292 * 120.00465 * 161.52555 * 13 11 10 15 15 Si 1.86806 * 119.99467 * 341.52989 * 13 11 10 16 16 H 1.48493 * 109.47313 * 89.06166 * 15 13 11 17 17 H 1.48505 * 109.47027 * 209.06400 * 15 13 11 18 18 H 1.48499 * 109.47150 * 329.05794 * 15 13 11 19 19 C 1.39697 * 120.00149 * 183.73176 * 10 8 7 20 20 C 1.38981 * 120.08756 * 120.94935 * 19 10 8 21 21 C 1.38073 * 119.92258 * 179.78920 * 20 19 10 22 22 C 1.38307 * 120.07998 * 0.46415 * 21 20 19 23 23 C 1.38311 * 120.16386 * 359.79106 * 22 21 20 24 24 C 1.38083 * 120.07568 * 359.97438 * 23 22 21 25 25 C 1.39934 * 120.00018 * 0.02562 * 7 6 5 26 26 F 1.35093 * 120.03019 * 179.97438 * 25 7 6 27 27 C 1.38057 * 119.94465 * 0.25284 * 25 7 6 28 28 H 1.08993 * 109.47304 * 185.51527 * 1 2 3 29 29 H 1.09007 * 109.46664 * 305.51711 * 1 2 3 30 30 H 1.09001 * 109.46856 * 65.51078 * 1 2 3 31 31 H 1.08004 * 119.97543 * 359.96763 * 5 4 2 32 32 H 1.08004 * 119.96990 * 179.97438 * 6 5 4 33 33 H 0.96996 * 119.99907 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.03317 * 359.97438 * 20 19 10 35 35 H 1.08001 * 119.96217 * 180.25164 * 21 20 19 36 36 H 1.08005 * 119.92029 * 179.76302 * 22 21 20 37 37 H 1.07998 * 119.96247 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.03564 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.02938 * 179.72969 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0499 0.0000 4 6 2.2435 -1.2758 0.0006 5 6 1.5500 -2.4842 -0.1313 6 6 2.2368 -3.6763 -0.1315 7 6 3.6284 -3.6825 -0.0004 8 6 4.3644 -4.9629 -0.0001 9 8 5.3950 -5.0718 -0.6362 10 7 3.8938 -6.0105 0.7050 11 6 2.6964 -5.9126 1.3582 12 1 2.3858 -4.9671 1.7778 13 6 1.8781 -7.0307 1.4821 14 7 0.9302 -7.0532 2.3902 15 14 2.1281 -8.5003 0.3563 16 1 3.1079 -9.4326 0.9695 17 1 0.8331 -9.2007 0.1617 18 1 2.6419 -8.0359 -0.9573 19 6 4.6292 -7.1965 0.7688 20 6 5.0453 -7.6931 1.9984 21 6 5.7683 -8.8679 2.0578 22 6 6.0868 -9.5454 0.8949 23 6 5.6790 -9.0516 -0.3310 24 6 4.9515 -7.8799 -0.3978 25 6 4.3241 -2.4756 0.1316 26 9 5.6691 -2.4809 0.2589 27 6 3.6344 -1.2797 0.1375 28 1 -0.3633 -1.0228 0.0988 29 1 -0.3633 0.5971 0.8365 30 1 -0.3633 0.4260 -0.9352 31 1 0.4747 -2.4809 -0.2330 32 1 1.7002 -4.6081 -0.2330 33 1 0.3599 -7.8330 2.4768 34 1 4.8009 -7.1621 2.9065 35 1 6.0885 -9.2564 3.0133 36 1 6.6557 -10.4621 0.9441 37 1 5.9298 -9.5831 -1.2371 38 1 4.6337 -7.4947 -1.3554 39 1 4.1696 -0.3476 0.2438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346643789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:54 Heat of formation + Delta-G solvation = -55.081455 kcal Electronic energy + Delta-G solvation = -27392.395328 eV Core-core repulsion = 23372.879035 eV Total energy + Delta-G solvation = -4019.516293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05210 -41.87105 -40.90784 -39.62866 -38.57078 -36.90995 -34.16244 -33.22874 -32.21983 -31.90843 -30.78249 -30.02712 -27.22371 -25.91347 -24.08254 -23.52837 -23.36140 -21.55915 -20.96043 -20.05678 -18.73995 -18.18021 -17.81788 -17.57791 -17.02835 -17.00275 -16.71251 -16.44750 -16.20225 -15.95055 -15.75945 -15.48712 -15.04074 -14.96757 -14.77825 -14.58394 -14.35936 -14.03322 -14.01175 -13.57802 -13.34150 -13.14902 -12.94514 -12.90352 -12.63486 -12.50529 -12.26530 -12.21153 -11.86368 -11.28943 -11.03741 -10.80506 -10.42911 -10.14572 -9.89634 -9.85162 -9.37409 -8.59410 -6.22170 -0.78724 0.08272 0.30395 0.43161 1.07753 1.27497 1.35467 1.41350 1.73770 2.19562 2.26132 2.56562 2.74934 2.80155 3.02779 3.24320 3.65915 3.69858 3.90551 3.99351 4.05283 4.09254 4.13125 4.23347 4.46287 4.51335 4.60668 4.65836 4.72419 4.73895 4.86480 4.96958 5.06626 5.09543 5.15182 5.28744 5.31242 5.46532 5.52995 5.54813 5.65810 5.90578 5.96142 6.23535 6.43585 6.75040 7.16511 7.51020 8.49104 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.004369 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.702469 B = 6407.681917 C = 7483.930188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.406 3.594 3 O -0.493 6.493 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.049 4.049 7 C -0.125 4.125 8 C 0.507 3.493 9 O -0.595 6.595 10 N -0.412 5.412 11 C -0.355 4.355 12 H 0.105 0.895 13 C 0.060 3.940 14 N -0.871 5.871 15 Si 0.900 3.100 16 H -0.257 1.257 17 H -0.288 1.288 18 H -0.262 1.262 19 C 0.118 3.882 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.143 4.143 25 C 0.102 3.898 26 F -0.143 7.143 27 C -0.112 4.112 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.190 0.810 32 H 0.154 0.846 33 H 0.284 0.716 34 H 0.117 0.883 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 2.420 -3.011 4.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.287 3.713 3 O -0.371 6.371 4 C -0.136 4.136 5 C -0.090 4.090 6 C -0.068 4.068 7 C -0.129 4.129 8 C 0.299 3.701 9 O -0.480 6.480 10 N -0.126 5.126 11 C -0.481 4.481 12 H 0.123 0.877 13 C -0.148 4.148 14 N -0.506 5.506 15 Si 0.726 3.274 16 H -0.181 1.181 17 H -0.215 1.215 18 H -0.187 1.187 19 C 0.026 3.974 20 C -0.154 4.154 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.163 4.163 25 C 0.082 3.918 26 F -0.121 7.121 27 C -0.131 4.131 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.207 0.793 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.122 0.878 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.082 2.826 -3.190 4.743 hybrid contribution 0.472 -0.725 -0.201 0.888 sum -1.610 2.102 -3.391 4.302 Atomic orbital electron populations 1.22307 0.89186 1.07109 1.06488 1.23039 0.93661 0.85631 0.69004 1.90526 1.73275 1.35083 1.38239 1.20769 0.92717 0.96761 1.03342 1.21890 1.02484 0.88946 0.95705 1.21650 0.90709 1.00815 0.93594 1.20173 0.96159 0.91481 1.05087 1.18616 0.85694 0.85581 0.80251 1.90682 1.26980 1.84990 1.45320 1.41305 1.18495 1.09672 1.43124 1.19125 0.93457 1.00125 1.35376 0.87714 1.25515 0.94540 0.99031 0.95688 1.69694 1.19778 1.31640 1.29444 0.86489 0.77545 0.81654 0.81748 1.18146 1.21541 1.18710 1.18067 0.95837 0.88918 0.94564 1.21295 0.98956 0.98601 0.96523 1.21388 0.97397 0.93866 1.00386 1.21538 1.00440 1.01158 0.91445 1.21349 0.97459 0.95007 0.99945 1.21261 1.01361 0.96710 0.96938 1.17777 0.77003 0.93768 1.03261 1.91481 1.30061 1.97340 1.93257 1.21295 0.95036 0.96199 1.00550 0.87395 0.87392 0.86512 0.79344 0.82832 0.90599 0.86509 0.82672 0.81895 0.83018 0.87803 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 10.16 71.24 0.72 -1.69 16 2 C 0.41 9.17 7.22 28.08 0.20 9.37 16 3 O -0.49 -14.50 17.09 -2.88 -0.05 -14.55 16 4 C -0.13 -3.59 5.87 -20.11 -0.12 -3.70 16 5 C -0.07 -1.83 9.38 22.53 0.21 -1.62 16 6 C -0.05 -1.69 7.68 22.49 0.17 -1.52 16 7 C -0.13 -5.22 5.21 -20.00 -0.10 -5.32 16 8 C 0.51 24.79 6.94 86.74 0.60 25.40 16 9 O -0.59 -31.95 15.58 -4.01 -0.06 -32.02 16 10 N -0.41 -19.99 2.42 -462.12 -1.12 -21.10 16 11 C -0.36 -17.33 7.01 84.14 0.59 -16.74 16 12 H 0.11 5.27 6.38 -2.91 -0.02 5.25 16 13 C 0.06 2.96 5.27 84.98 0.45 3.41 16 14 N -0.87 -43.91 13.95 21.69 0.30 -43.61 16 15 Si 0.90 40.09 23.69 68.60 1.63 41.72 16 16 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 17 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.88 5.84 99.48 0.58 -11.30 16 19 C 0.12 5.41 2.45 38.25 0.09 5.50 16 20 C -0.13 -5.60 8.80 22.41 0.20 -5.41 16 21 C -0.11 -3.71 10.04 22.25 0.22 -3.49 16 22 C -0.13 -3.82 10.04 22.30 0.22 -3.60 16 23 C -0.12 -4.05 10.01 22.25 0.22 -3.83 16 24 C -0.14 -6.11 5.62 22.41 0.13 -5.98 16 25 C 0.10 4.02 7.24 22.64 0.16 4.18 16 26 F -0.14 -6.19 16.32 44.97 0.73 -5.46 16 27 C -0.11 -3.61 9.56 22.60 0.22 -3.39 16 28 H 0.11 0.94 5.71 -2.39 -0.01 0.93 16 29 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.19 2.92 6.03 -2.91 -0.02 2.90 16 32 H 0.15 5.61 6.46 -2.91 -0.02 5.59 16 33 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 34 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 35 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.10 4.68 7.54 -2.91 -0.02 4.66 16 39 H 0.15 4.56 7.65 -2.91 -0.02 4.54 16 Total: -1.00 -68.88 333.97 6.58 -62.29 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.96 Total: 21.15 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.19 Total: -8.42 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.81 Total: -64.71 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.11 Total: -46.56 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.73 Total: -5.46 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.63 Total: 41.72 kcal Total: -68.88 6.58 -62.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346643789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.210 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds