Wall clock time and date at job start Tue Mar 31 2020 15:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76205 * 103.00007 * 2 1 4 4 C 1.38999 * 120.07836 * 0.29080 * 3 2 1 5 5 C 1.38058 * 119.91420 * 180.30013 * 4 3 2 6 6 C 1.38313 * 120.08479 * 359.70637 * 5 4 3 7 7 C 1.38290 * 120.16170 * 359.97438 * 6 5 4 8 8 C 1.38102 * 120.07536 * 0.04307 * 7 6 5 9 9 C 1.50702 * 120.03839 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46832 * 262.74288 * 9 8 7 11 11 O 1.21273 * 120.00140 * 355.43992 * 10 9 8 12 12 N 1.34780 * 119.99503 * 175.70907 * 10 9 8 13 13 C 1.37145 * 120.00040 * 4.84129 * 12 10 9 14 14 H 1.08000 * 119.99483 * 311.94417 * 13 12 10 15 15 C 1.38885 * 119.99893 * 131.95511 * 13 12 10 16 16 N 1.31416 * 119.99994 * 162.50605 * 15 13 12 17 17 Si 1.86802 * 119.99882 * 342.49555 * 15 13 12 18 18 H 1.48494 * 109.47312 * 95.12891 * 17 15 13 19 19 H 1.48505 * 109.46912 * 215.13088 * 17 15 13 20 20 H 1.48504 * 109.47140 * 335.12769 * 17 15 13 21 21 C 1.39788 * 119.99650 * 184.83633 * 12 10 9 22 22 C 1.38959 * 120.07805 * 352.16332 * 21 12 10 23 23 C 1.38090 * 119.91798 * 179.78784 * 22 21 12 24 24 C 1.38306 * 120.07671 * 0.46703 * 23 22 21 25 25 C 1.38305 * 120.15768 * 359.78806 * 24 23 22 26 26 C 1.38081 * 120.07882 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46943 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.47280 * 60.00196 * 1 2 3 30 30 H 1.07997 * 120.03936 * 359.97438 * 4 3 2 31 31 H 1.08010 * 119.95779 * 179.73018 * 5 4 3 32 32 H 1.08005 * 119.92316 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.95945 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46928 * 142.74482 * 9 8 7 35 35 H 1.09000 * 109.47045 * 22.74265 * 9 8 7 36 36 H 0.97002 * 120.00136 * 179.97438 * 16 15 13 37 37 H 1.07995 * 120.03891 * 0.02562 * 22 21 12 38 38 H 1.07997 * 119.95746 * 180.23159 * 23 22 21 39 39 H 1.08000 * 119.91798 * 179.76553 * 24 23 22 40 40 H 1.08003 * 119.96102 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.03788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1952 2.6662 0.0061 5 6 1.5095 4.0105 -0.0002 6 6 2.8328 4.4131 -0.0064 7 6 3.8455 3.4715 -0.0058 8 6 3.5386 2.1250 0.0001 9 6 4.6429 1.0995 0.0001 10 6 4.8842 0.6211 -1.4085 11 8 4.1705 1.0060 -2.3102 12 7 5.8898 -0.2388 -1.6651 13 6 6.6304 -0.7556 -0.6329 14 1 7.0216 -0.1007 0.1317 15 6 6.8774 -2.1209 -0.5710 16 7 7.8452 -2.5797 0.1905 17 14 5.8336 -3.3051 -1.5699 18 1 6.5149 -3.6021 -2.8554 19 1 5.6462 -4.5649 -0.8062 20 1 4.5098 -2.6896 -1.8419 21 6 6.1778 -0.6040 -2.9833 22 6 5.3322 -0.2138 -4.0147 23 6 5.6223 -0.5727 -5.3162 24 6 6.7476 -1.3278 -5.5926 25 6 7.5885 -1.7223 -4.5680 26 6 7.3073 -1.3630 -3.2647 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.1617 2.3526 0.0104 31 1 0.7212 4.7488 0.0001 32 1 3.0757 5.4655 -0.0109 33 1 4.8776 3.7894 -0.0103 34 1 4.3546 0.2552 0.6263 35 1 5.5554 1.5482 0.3928 36 1 8.0175 -3.5333 0.2340 37 1 4.4514 0.3726 -3.7990 38 1 4.9675 -0.2666 -6.1187 39 1 6.9699 -1.6102 -6.6111 40 1 8.4662 -2.3123 -4.7874 41 1 7.9642 -1.6718 -2.4651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346656487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:21 Heat of formation + Delta-G solvation = 45.048974 kcal Electronic energy + Delta-G solvation = -25441.948551 eV Core-core repulsion = 21992.987416 eV Total energy + Delta-G solvation = -3448.961135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13426 -38.91419 -37.36027 -35.08341 -32.71072 -32.20902 -31.12301 -30.00082 -29.32474 -28.76141 -26.96523 -25.17940 -22.67117 -22.40112 -21.55332 -20.92161 -19.31226 -18.10511 -17.28249 -16.43124 -15.86939 -15.74422 -15.43526 -15.21891 -14.46524 -14.32008 -14.03936 -13.90577 -13.81083 -13.60799 -13.37783 -12.81006 -12.75981 -12.69346 -12.48809 -12.32965 -12.27397 -12.00109 -11.45645 -11.35045 -11.19446 -10.95251 -10.89387 -10.70815 -10.22822 -10.10744 -9.87286 -9.54945 -9.50087 -8.83672 -8.70151 -8.25974 -7.98936 -7.14338 -7.05018 -6.59796 -4.39833 1.41909 1.52447 1.73392 2.11048 2.25516 2.62807 3.16733 3.27102 3.38020 3.60058 3.80050 4.11561 4.28481 4.61355 4.92863 4.95643 5.00812 5.05600 5.07566 5.15655 5.47898 5.56092 5.62446 5.66732 5.67963 5.79922 5.86578 5.94937 5.98941 6.10712 6.33242 6.38473 6.40456 6.47725 6.60368 6.64420 6.75204 6.87915 7.08187 7.21866 7.32074 7.36294 7.42923 7.76825 7.98604 8.23617 8.79424 9.12890 9.40874 10.44787 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004841 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.271074 B = 5782.835789 C = 6224.882594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.094 6.094 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.093 4.093 8 C -0.036 4.036 9 C -0.089 4.089 10 C 0.503 3.497 11 O -0.546 6.546 12 N -0.405 5.405 13 C -0.373 4.373 14 H 0.110 0.890 15 C 0.089 3.911 16 N -0.851 5.851 17 Si 0.857 3.143 18 H -0.252 1.252 19 H -0.286 1.286 20 H -0.257 1.257 21 C 0.157 3.843 22 C -0.186 4.186 23 C -0.112 4.112 24 C -0.172 4.172 25 C -0.109 4.109 26 C -0.151 4.151 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.279 0.721 37 H 0.180 0.820 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 6.968 -0.197 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.150 5.850 3 C -0.180 4.180 4 C -0.161 4.161 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.113 4.113 8 C -0.042 4.042 9 C -0.128 4.128 10 C 0.295 3.705 11 O -0.428 6.428 12 N -0.114 5.114 13 C -0.499 4.499 14 H 0.127 0.873 15 C -0.121 4.121 16 N -0.483 5.483 17 Si 0.681 3.319 18 H -0.177 1.177 19 H -0.212 1.212 20 H -0.181 1.181 21 C 0.061 3.939 22 C -0.206 4.206 23 C -0.130 4.130 24 C -0.191 4.191 25 C -0.128 4.128 26 C -0.171 4.171 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.196 0.804 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.463 5.919 -0.436 11.170 hybrid contribution -1.036 0.196 -0.389 1.124 sum -10.499 6.116 -0.824 12.178 Atomic orbital electron populations 1.23704 0.96751 1.06706 1.05122 1.86055 1.04234 1.02970 1.91726 1.21581 0.95996 0.96525 1.03858 1.21031 0.97730 0.93238 1.04122 1.20908 0.96480 0.95044 1.00478 1.21050 0.92760 0.99214 1.01767 1.20979 0.99515 0.91796 0.98986 1.19202 0.91937 0.94231 0.98836 1.20474 0.97571 0.98328 0.96469 1.20534 0.79329 0.80603 0.90027 1.90216 1.46931 1.60014 1.45679 1.41373 1.27480 1.38840 1.03704 1.18987 1.33419 0.92532 1.04952 0.87287 1.25336 0.94312 0.97316 0.95127 1.69735 1.25657 1.15610 1.37334 0.87173 0.83025 0.80661 0.81025 1.17666 1.21205 1.18090 1.18436 0.94116 0.96269 0.85124 1.22814 1.02991 1.03473 0.91332 1.20987 0.97011 0.98645 0.96403 1.20891 0.97266 1.02816 0.98156 1.20808 0.99248 1.00149 0.92569 1.21179 0.97697 1.00845 0.97401 0.87740 0.90154 0.90002 0.86308 0.86274 0.86141 0.85668 0.87248 0.87961 0.91063 0.80387 0.87163 0.87564 0.87037 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.15 101.05 0.92 -0.82 16 2 S -0.09 -1.55 20.80 -107.50 -2.24 -3.79 16 3 C -0.07 -1.10 6.03 -39.04 -0.24 -1.34 16 4 C -0.14 -1.91 9.36 -39.37 -0.37 -2.28 16 5 C -0.11 -1.37 10.04 -39.62 -0.40 -1.77 16 6 C -0.13 -1.65 10.04 -39.53 -0.40 -2.04 16 7 C -0.09 -1.40 9.67 -39.61 -0.38 -1.78 16 8 C -0.04 -0.62 4.43 -104.41 -0.46 -1.09 16 9 C -0.09 -1.70 4.05 -29.03 -0.12 -1.82 16 10 C 0.50 11.35 7.41 -10.98 -0.08 11.27 16 11 O -0.55 -12.82 12.38 5.56 0.07 -12.75 16 12 N -0.41 -9.83 2.25 -58.98 -0.13 -9.96 16 13 C -0.37 -9.43 8.25 -14.94 -0.12 -9.56 16 14 H 0.11 2.81 7.49 -52.49 -0.39 2.42 16 15 C 0.09 2.31 3.83 -17.49 -0.07 2.24 16 16 N -0.85 -22.57 13.96 55.49 0.77 -21.79 16 17 Si 0.86 20.92 24.74 -169.99 -4.21 16.71 16 18 H -0.25 -6.05 6.09 56.52 0.34 -5.71 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.16 3.78 4.69 -83.69 -0.39 3.39 16 22 C -0.19 -4.22 9.05 -39.37 -0.36 -4.57 16 23 C -0.11 -2.19 10.04 -39.61 -0.40 -2.59 16 24 C -0.17 -3.22 10.04 -39.53 -0.40 -3.62 16 25 C -0.11 -2.20 9.86 -39.61 -0.39 -2.59 16 26 C -0.15 -3.49 5.99 -39.37 -0.24 -3.72 16 27 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 28 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 29 H 0.08 0.87 7.76 -51.92 -0.40 0.47 16 30 H 0.12 1.37 5.88 -52.49 -0.31 1.06 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.13 1.69 8.05 -52.49 -0.42 1.27 16 34 H 0.11 2.16 7.13 -51.93 -0.37 1.79 16 35 H 0.10 1.82 7.58 -51.93 -0.39 1.42 16 36 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.18 4.19 4.55 -56.12 -0.26 3.93 16 38 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.14 3.46 5.55 -52.49 -0.29 3.17 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -29.30 344.84 -9.38 -38.68 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.97 Total: 10.40 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.88 Total: -22.70 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.64 Total: -31.75 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.21 Total: 16.71 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.24 Total: -3.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.30 -9.38 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346656487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.729 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds