Wall clock time and date at job start Tue Mar 31 2020 15:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76205 * 103.00007 * 2 1 4 4 C 1.38999 * 120.07836 * 0.29080 * 3 2 1 5 5 C 1.38058 * 119.91420 * 180.30013 * 4 3 2 6 6 C 1.38313 * 120.08479 * 359.70637 * 5 4 3 7 7 C 1.38290 * 120.16170 * 359.97438 * 6 5 4 8 8 C 1.38102 * 120.07536 * 0.04307 * 7 6 5 9 9 C 1.50702 * 120.03839 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46832 * 262.74288 * 9 8 7 11 11 O 1.21273 * 120.00140 * 355.43992 * 10 9 8 12 12 N 1.34780 * 119.99503 * 175.70907 * 10 9 8 13 13 C 1.37145 * 120.00040 * 4.84129 * 12 10 9 14 14 H 1.08000 * 119.99483 * 311.94417 * 13 12 10 15 15 C 1.38885 * 119.99893 * 131.95511 * 13 12 10 16 16 N 1.31416 * 119.99994 * 162.50605 * 15 13 12 17 17 Si 1.86802 * 119.99882 * 342.49555 * 15 13 12 18 18 H 1.48494 * 109.47312 * 95.12891 * 17 15 13 19 19 H 1.48505 * 109.46912 * 215.13088 * 17 15 13 20 20 H 1.48504 * 109.47140 * 335.12769 * 17 15 13 21 21 C 1.39788 * 119.99650 * 184.83633 * 12 10 9 22 22 C 1.38959 * 120.07805 * 352.16332 * 21 12 10 23 23 C 1.38090 * 119.91798 * 179.78784 * 22 21 12 24 24 C 1.38306 * 120.07671 * 0.46703 * 23 22 21 25 25 C 1.38305 * 120.15768 * 359.78806 * 24 23 22 26 26 C 1.38081 * 120.07882 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46943 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.47280 * 60.00196 * 1 2 3 30 30 H 1.07997 * 120.03936 * 359.97438 * 4 3 2 31 31 H 1.08010 * 119.95779 * 179.73018 * 5 4 3 32 32 H 1.08005 * 119.92316 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.95945 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46928 * 142.74482 * 9 8 7 35 35 H 1.09000 * 109.47045 * 22.74265 * 9 8 7 36 36 H 0.97002 * 120.00136 * 179.97438 * 16 15 13 37 37 H 1.07995 * 120.03891 * 0.02562 * 22 21 12 38 38 H 1.07997 * 119.95746 * 180.23159 * 23 22 21 39 39 H 1.08000 * 119.91798 * 179.76553 * 24 23 22 40 40 H 1.08003 * 119.96102 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.03788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1952 2.6662 0.0061 5 6 1.5095 4.0105 -0.0002 6 6 2.8328 4.4131 -0.0064 7 6 3.8455 3.4715 -0.0058 8 6 3.5386 2.1250 0.0001 9 6 4.6429 1.0995 0.0001 10 6 4.8842 0.6211 -1.4085 11 8 4.1705 1.0060 -2.3102 12 7 5.8898 -0.2388 -1.6651 13 6 6.6304 -0.7556 -0.6329 14 1 7.0216 -0.1007 0.1317 15 6 6.8774 -2.1209 -0.5710 16 7 7.8452 -2.5797 0.1905 17 14 5.8336 -3.3051 -1.5699 18 1 6.5149 -3.6021 -2.8554 19 1 5.6462 -4.5649 -0.8062 20 1 4.5098 -2.6896 -1.8419 21 6 6.1778 -0.6040 -2.9833 22 6 5.3322 -0.2138 -4.0147 23 6 5.6223 -0.5727 -5.3162 24 6 6.7476 -1.3278 -5.5926 25 6 7.5885 -1.7223 -4.5680 26 6 7.3073 -1.3630 -3.2647 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.1617 2.3526 0.0104 31 1 0.7212 4.7488 0.0001 32 1 3.0757 5.4655 -0.0109 33 1 4.8776 3.7894 -0.0103 34 1 4.3546 0.2552 0.6263 35 1 5.5554 1.5482 0.3928 36 1 8.0175 -3.5333 0.2340 37 1 4.4514 0.3726 -3.7990 38 1 4.9675 -0.2666 -6.1187 39 1 6.9699 -1.6102 -6.6111 40 1 8.4662 -2.3123 -4.7874 41 1 7.9642 -1.6718 -2.4651 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346656487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:20 Heat of formation + Delta-G solvation = 30.673151 kcal Electronic energy + Delta-G solvation = -25442.571934 eV Core-core repulsion = 21992.987416 eV Total energy + Delta-G solvation = -3449.584518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.83428 -40.14885 -38.95324 -36.89545 -34.19994 -33.99075 -32.19336 -31.65568 -30.90503 -29.69423 -28.39802 -27.07626 -23.95799 -23.72426 -23.14927 -22.33004 -21.10238 -19.85250 -18.45464 -18.13390 -17.63579 -17.07997 -16.94637 -16.60659 -16.10314 -15.72780 -15.54076 -15.34963 -15.03679 -14.90372 -14.70609 -14.60046 -14.27983 -14.16890 -14.00746 -13.77551 -13.42553 -13.36529 -13.14791 -12.91291 -12.71536 -12.49595 -12.43547 -12.14349 -11.98970 -11.87123 -11.38043 -11.01199 -10.74086 -10.62710 -10.13630 -9.71407 -9.65989 -8.85496 -8.59187 -8.37422 -6.40090 0.30348 0.40772 0.45738 0.58183 0.62698 1.20387 1.26208 1.37599 1.56130 1.84473 2.13071 2.42729 2.71793 2.88148 3.15115 3.75551 3.88390 3.98881 4.14426 4.20043 4.23043 4.24178 4.26013 4.35175 4.47563 4.50377 4.60527 4.67177 4.70662 4.78214 4.82357 4.85808 4.94199 5.08504 5.25013 5.33759 5.48498 5.52770 5.59085 5.62100 5.68679 5.74964 6.00277 6.02034 6.03803 6.43195 6.84090 7.26190 7.57183 8.46904 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004841 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.271074 B = 5782.835789 C = 6224.882594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.184 6.184 3 C -0.076 4.076 4 C -0.140 4.140 5 C -0.102 4.102 6 C -0.123 4.123 7 C -0.107 4.107 8 C -0.067 4.067 9 C -0.079 4.079 10 C 0.500 3.500 11 O -0.557 6.557 12 N -0.420 5.420 13 C -0.366 4.366 14 H 0.094 0.906 15 C 0.068 3.932 16 N -0.879 5.879 17 Si 0.899 3.101 18 H -0.243 1.243 19 H -0.281 1.281 20 H -0.284 1.284 21 C 0.129 3.871 22 C -0.207 4.207 23 C -0.107 4.107 24 C -0.158 4.158 25 C -0.110 4.110 26 C -0.174 4.174 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.284 0.716 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.570 8.191 -2.083 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.059 5.941 3 C -0.189 4.189 4 C -0.164 4.164 5 C -0.121 4.121 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.072 4.072 9 C -0.118 4.118 10 C 0.293 3.707 11 O -0.440 6.440 12 N -0.130 5.130 13 C -0.493 4.493 14 H 0.111 0.889 15 C -0.139 4.139 16 N -0.514 5.514 17 Si 0.724 3.276 18 H -0.167 1.167 19 H -0.207 1.207 20 H -0.209 1.209 21 C 0.033 3.967 22 C -0.226 4.226 23 C -0.125 4.125 24 C -0.177 4.177 25 C -0.128 4.128 26 C -0.194 4.194 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.182 7.146 -2.329 13.473 hybrid contribution -0.574 -0.064 0.105 0.587 sum -11.756 7.082 -2.224 13.903 Atomic orbital electron populations 1.23738 0.91414 1.08145 1.06582 1.86287 1.10283 1.05304 1.92255 1.21624 0.96359 0.96025 1.04907 1.21411 0.98293 0.93478 1.03231 1.21407 0.97366 0.95172 0.98191 1.21463 0.92465 1.00398 1.00040 1.21201 1.00819 0.91360 0.99259 1.19194 0.91793 0.94620 1.01640 1.20353 0.98748 0.98643 0.94104 1.21035 0.78661 0.79788 0.91244 1.90188 1.47152 1.60246 1.46412 1.41487 1.28119 1.39593 1.03835 1.18861 1.32976 0.92384 1.05031 0.88875 1.25612 0.94713 0.97993 0.95615 1.69759 1.26754 1.16120 1.38763 0.86552 0.80733 0.79517 0.80820 1.16666 1.20677 1.20946 1.18733 0.95217 0.97496 0.85266 1.22822 1.02766 1.04419 0.92636 1.21399 0.97685 0.97583 0.95835 1.21364 0.95740 1.00770 0.99858 1.21222 1.00359 0.99661 0.91596 1.21153 0.97622 1.02229 0.98429 0.86331 0.87994 0.89031 0.83863 0.82350 0.82813 0.85054 0.88690 0.87747 0.90592 0.81724 0.83720 0.83031 0.84176 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.15 113.37 1.04 -1.72 16 2 S -0.18 -6.32 20.80 -56.49 -1.18 -7.50 16 3 C -0.08 -2.55 6.03 22.62 0.14 -2.41 16 4 C -0.14 -3.62 9.36 22.41 0.21 -3.41 16 5 C -0.10 -2.21 10.04 22.24 0.22 -1.99 16 6 C -0.12 -2.87 10.04 22.30 0.22 -2.65 16 7 C -0.11 -3.19 9.67 22.25 0.22 -2.97 16 8 C -0.07 -2.38 4.43 -19.73 -0.09 -2.46 16 9 C -0.08 -3.23 4.05 29.10 0.12 -3.11 16 10 C 0.50 23.78 7.41 87.66 0.65 24.43 16 11 O -0.56 -27.24 12.38 -3.01 -0.04 -27.28 16 12 N -0.42 -21.40 2.25 -458.89 -1.03 -22.43 16 13 C -0.37 -19.56 8.25 84.02 0.69 -18.87 16 14 H 0.09 5.15 7.49 -2.91 -0.02 5.13 16 15 C 0.07 3.67 3.83 84.91 0.33 4.00 16 16 N -0.88 -48.25 13.96 21.65 0.30 -47.95 16 17 Si 0.90 44.59 24.74 68.60 1.70 46.29 16 18 H -0.24 -11.51 6.09 99.48 0.61 -10.91 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.28 -15.26 7.11 99.48 0.71 -14.55 16 21 C 0.13 6.34 4.69 38.22 0.18 6.52 16 22 C -0.21 -9.37 9.05 22.41 0.20 -9.17 16 23 C -0.11 -3.92 10.04 22.25 0.22 -3.70 16 24 C -0.16 -5.36 10.04 22.30 0.22 -5.13 16 25 C -0.11 -4.21 9.86 22.25 0.22 -3.99 16 26 C -0.17 -8.09 5.99 22.41 0.13 -7.96 16 27 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.10 1.70 7.74 -2.39 -0.02 1.68 16 29 H 0.09 1.76 7.76 -2.39 -0.02 1.74 16 30 H 0.14 2.86 5.88 -2.91 -0.02 2.85 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.13 3.58 8.05 -2.91 -0.02 3.56 16 34 H 0.10 4.11 7.13 -2.39 -0.02 4.10 16 35 H 0.10 4.04 7.58 -2.39 -0.02 4.03 16 36 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.17 7.93 4.55 -60.48 -0.28 7.66 16 38 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.12 6.02 5.55 -2.91 -0.02 6.00 16 Total: -1.00 -67.24 344.84 5.37 -61.87 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.69 Total: 31.59 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 4.93 Total: -34.59 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -0.73 Total: -70.38 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.70 Total: 46.29 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.18 Total: -7.50 kcal Total: -67.24 5.37 -61.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346656487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.540 kcal (2) G-P(sol) polarization free energy of solvation -67.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds