Wall clock time and date at job start Tue Mar 31 2020 15:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 103.00039 * 2 1 4 4 C 1.38952 * 120.00736 * 179.97438 * 3 2 1 5 5 C 1.38045 * 119.98963 * 180.02562 * 4 3 2 6 6 C 1.38886 * 120.00526 * 0.02562 * 5 4 3 7 7 N 1.40076 * 119.98889 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99537 * 7.21081 * 7 6 5 9 9 C 1.34768 * 120.00000 * 187.20579 * 7 6 5 10 10 O 1.21572 * 119.99882 * 6.13118 * 9 7 6 11 11 C 1.47856 * 120.00127 * 186.12983 * 9 7 6 12 12 C 1.39934 * 120.02373 * 327.81089 * 11 9 7 13 13 C 1.38330 * 120.35724 * 179.76074 * 12 11 9 14 14 C 1.37753 * 120.41105 * 0.52065 * 13 12 11 15 15 C 1.40757 * 120.04321 * 359.74442 * 14 13 12 16 16 C 1.41427 * 120.17754 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00375 * 329.90454 * 16 15 14 18 18 C 1.39941 * 120.00192 * 149.90203 * 16 15 14 19 19 N 1.30824 * 119.99951 * 1.44508 * 18 16 15 20 20 Si 1.86797 * 120.00246 * 181.44380 * 18 16 15 21 21 H 1.48499 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47082 * 119.99931 * 20 18 16 23 23 H 1.48497 * 109.47444 * 240.00053 * 20 18 16 24 24 C 1.39006 * 120.03009 * 148.09277 * 11 9 7 25 25 C 1.38880 * 120.01776 * 0.23534 * 6 5 4 26 26 C 1.38034 * 120.00959 * 359.48542 * 25 6 5 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47163 * 299.99930 * 1 2 3 29 29 H 1.08996 * 109.47099 * 59.99932 * 1 2 3 30 30 H 1.07999 * 120.00350 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.99569 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47039 * 274.88019 * 8 7 6 33 33 H 1.09008 * 109.46800 * 154.88316 * 8 7 6 34 34 H 1.08998 * 109.47516 * 34.88274 * 8 7 6 35 35 H 1.08003 * 119.82198 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79207 * 180.23938 * 13 12 11 37 37 H 1.07995 * 119.98065 * 179.75991 * 14 13 12 38 38 H 0.96998 * 120.00394 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.19806 * 359.95209 * 24 11 9 40 40 H 1.08008 * 119.99564 * 179.74688 * 25 6 5 41 41 H 1.08000 * 120.00594 * 180.25333 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5392 2.1232 0.0005 5 6 3.8493 3.4684 0.0011 6 6 2.8333 4.4154 0.0016 7 7 3.1484 5.7802 0.0027 8 6 4.5397 6.2109 -0.1560 9 6 2.1717 6.6972 0.1496 10 8 1.0350 6.3408 0.3924 11 6 2.4826 8.1364 0.0156 12 6 3.7374 8.6206 0.4017 13 6 4.0374 9.9650 0.2747 14 6 3.1012 10.8443 -0.2232 15 6 1.8317 10.3767 -0.6117 16 6 0.8685 11.2769 -1.1237 17 1 0.8640 12.3063 -0.7970 18 6 -0.0786 10.8338 -2.0537 19 7 -0.0911 9.5804 -2.4282 20 14 -1.3253 12.0321 -2.7604 21 1 -1.1005 13.3802 -2.1796 22 1 -1.1684 12.0969 -4.2357 23 1 -2.6976 11.5721 -2.4283 24 6 1.5267 9.0106 -0.4887 25 6 1.5052 4.0095 0.0065 26 6 1.1943 2.6646 0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.3291 1.3868 0.0005 31 1 4.8819 3.7844 0.0011 32 1 5.0350 6.2045 0.8150 33 1 4.5630 7.2193 -0.5691 34 1 5.0562 5.5293 -0.8319 35 1 4.4772 7.9403 0.7971 36 1 5.0101 10.3282 0.5720 37 1 3.3414 11.8932 -0.3157 38 1 -0.7473 9.2733 -3.0731 39 1 0.5556 8.6419 -0.7844 40 1 0.7154 4.7462 0.0111 41 1 0.1614 2.3491 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353091463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:52 Heat of formation + Delta-G solvation = 46.101305 kcal Electronic energy + Delta-G solvation = -24364.144387 eV Core-core repulsion = 20915.228884 eV Total energy + Delta-G solvation = -3448.915503 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61630 -38.41844 -37.12375 -35.51994 -33.79785 -31.19414 -31.13384 -29.63065 -29.42819 -28.77273 -27.02066 -25.43557 -23.67192 -22.57234 -21.33504 -21.00340 -19.35292 -17.80004 -17.65145 -16.97293 -16.03615 -15.59877 -15.37691 -15.10846 -14.95581 -14.58019 -14.25952 -13.94639 -13.83202 -13.54435 -13.30899 -12.97334 -12.82353 -12.73785 -12.66882 -12.54012 -12.15837 -11.97106 -11.66212 -11.22078 -11.15770 -11.15239 -10.61469 -10.50481 -10.42907 -10.33448 -9.98277 -9.80556 -9.38961 -8.92685 -8.85887 -8.54477 -7.76746 -7.52057 -7.08256 -6.76116 -4.55813 1.23290 1.48814 1.50055 2.12006 2.35927 2.71197 3.02912 3.04585 3.08270 3.10950 3.45839 3.86594 3.93043 4.52954 4.78366 4.88821 4.90360 4.96371 5.17034 5.21360 5.40510 5.41893 5.49037 5.54085 5.60345 5.63315 5.94533 5.99089 6.08877 6.16128 6.20004 6.39216 6.45674 6.59672 6.64340 6.88670 6.90791 7.15483 7.23941 7.29933 7.48709 7.60353 7.72015 7.89116 8.07569 8.41809 8.56161 8.72959 8.75051 10.12008 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002977 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.597087 B = 9402.525689 C =10852.548064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.137 6.137 3 C -0.120 4.120 4 C -0.075 4.075 5 C -0.151 4.151 6 C 0.167 3.833 7 N -0.554 5.554 8 C 0.049 3.951 9 C 0.570 3.430 10 O -0.519 6.519 11 C -0.132 4.132 12 C -0.226 4.226 13 C -0.104 4.104 14 C -0.200 4.200 15 C 0.093 3.907 16 C -0.455 4.455 17 H 0.081 0.919 18 C 0.068 3.932 19 N -0.803 5.803 20 Si 0.919 3.081 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.087 4.087 25 C -0.148 4.148 26 C -0.106 4.106 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.148 0.852 40 H 0.183 0.817 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -12.632 2.158 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.233 4.233 4 C -0.098 4.098 5 C -0.173 4.173 6 C 0.069 3.931 7 N -0.275 5.275 8 C -0.093 4.093 9 C 0.364 3.636 10 O -0.397 6.397 11 C -0.136 4.136 12 C -0.246 4.246 13 C -0.122 4.122 14 C -0.220 4.220 15 C 0.090 3.910 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.149 4.149 19 N -0.429 5.429 20 Si 0.743 3.257 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.107 4.107 25 C -0.169 4.169 26 C -0.130 4.130 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.199 0.801 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.906 -13.902 2.123 14.894 hybrid contribution -1.135 1.478 -0.430 1.912 sum 3.771 -12.425 1.693 13.094 Atomic orbital electron populations 1.23622 0.94790 1.06701 1.05803 1.85188 1.06535 1.04376 1.93657 1.21522 0.96726 0.95750 1.09339 1.20402 0.94125 0.95046 1.00261 1.20725 0.98401 0.91918 1.06266 1.18129 0.93968 0.83008 0.97994 1.45490 1.09347 1.03650 1.69049 1.22833 0.80272 1.04334 1.01821 1.19162 0.83342 0.86736 0.74327 1.90389 1.21591 1.80442 1.47286 1.19374 0.96839 0.90043 1.07302 1.21001 0.96468 0.95930 1.11180 1.20488 0.97981 0.93238 1.00489 1.21246 0.94065 0.98287 1.08370 1.17654 0.91427 0.92208 0.89684 1.19635 1.10738 0.97368 1.20704 0.90121 1.25962 0.97261 0.95807 0.95843 1.69688 1.31839 1.15385 1.25999 0.86080 0.79779 0.80815 0.78996 1.18456 1.19841 1.19740 1.21989 0.98737 0.92903 0.97095 1.22576 0.97268 0.96911 1.00152 1.21150 0.97954 0.92733 1.01122 0.87720 0.89773 0.89761 0.85575 0.85225 0.91833 0.86165 0.91465 0.87046 0.88578 0.88409 0.90707 0.83514 0.80071 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.15 101.05 0.92 -0.29 16 2 S -0.14 -1.58 22.56 -107.50 -2.43 -4.00 16 3 C -0.12 -1.66 6.11 -39.05 -0.24 -1.89 16 4 C -0.07 -0.98 9.78 -39.39 -0.39 -1.36 16 5 C -0.15 -2.07 9.15 -39.41 -0.36 -2.43 16 6 C 0.17 2.80 6.49 -83.61 -0.54 2.25 16 7 N -0.55 -9.74 3.10 -121.81 -0.38 -10.12 16 8 C 0.05 0.67 7.97 59.85 0.48 1.14 16 9 C 0.57 12.17 7.35 -12.33 -0.09 12.08 16 10 O -0.52 -12.15 13.24 5.30 0.07 -12.08 16 11 C -0.13 -2.97 5.50 -105.04 -0.58 -3.55 16 12 C -0.23 -4.43 7.44 -38.91 -0.29 -4.72 16 13 C -0.10 -2.06 10.01 -39.73 -0.40 -2.45 16 14 C -0.20 -4.49 9.78 -38.81 -0.38 -4.86 16 15 C 0.09 2.35 5.59 -106.87 -0.60 1.75 16 16 C -0.45 -11.53 9.07 -37.73 -0.34 -11.87 16 17 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 18 C 0.07 1.65 5.41 -17.34 -0.09 1.56 16 19 N -0.80 -20.43 10.40 55.55 0.58 -19.85 16 20 Si 0.92 18.35 29.56 -169.99 -5.02 13.32 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 C -0.09 -2.22 8.25 -38.44 -0.32 -2.53 16 25 C -0.15 -2.59 8.98 -39.42 -0.35 -2.94 16 26 C -0.11 -1.57 9.36 -39.39 -0.37 -1.94 16 27 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.08 0.71 7.74 -51.92 -0.40 0.31 16 29 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.45 6.47 -52.49 -0.34 1.11 16 32 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 33 H 0.12 1.79 4.53 -51.92 -0.23 1.56 16 34 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 35 H 0.11 1.81 4.75 -52.48 -0.25 1.56 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 39 H 0.15 4.06 5.74 -52.49 -0.30 3.76 16 40 H 0.18 3.61 4.68 -55.38 -0.26 3.36 16 41 H 0.12 1.57 5.87 -52.49 -0.31 1.26 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -28.14 345.92 -10.38 -38.52 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.48 Total: 11.07 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.93 Total: -22.07 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.20 Total: -29.97 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.43 Total: -4.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.14 -10.38 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353091463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.623 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds