Wall clock time and date at job start Tue Mar 31 2020 15:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 103.00039 * 2 1 4 4 C 1.38952 * 120.00736 * 179.97438 * 3 2 1 5 5 C 1.38045 * 119.98963 * 180.02562 * 4 3 2 6 6 C 1.38886 * 120.00526 * 0.02562 * 5 4 3 7 7 N 1.40076 * 119.98889 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99537 * 7.21081 * 7 6 5 9 9 C 1.34768 * 120.00000 * 187.20579 * 7 6 5 10 10 O 1.21572 * 119.99882 * 6.13118 * 9 7 6 11 11 C 1.47856 * 120.00127 * 186.12983 * 9 7 6 12 12 C 1.39934 * 120.02373 * 327.81089 * 11 9 7 13 13 C 1.38330 * 120.35724 * 179.76074 * 12 11 9 14 14 C 1.37753 * 120.41105 * 0.52065 * 13 12 11 15 15 C 1.40757 * 120.04321 * 359.74442 * 14 13 12 16 16 C 1.41427 * 120.17754 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00375 * 329.90454 * 16 15 14 18 18 C 1.39941 * 120.00192 * 149.90203 * 16 15 14 19 19 N 1.30824 * 119.99951 * 1.44508 * 18 16 15 20 20 Si 1.86797 * 120.00246 * 181.44380 * 18 16 15 21 21 H 1.48499 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47082 * 119.99931 * 20 18 16 23 23 H 1.48497 * 109.47444 * 240.00053 * 20 18 16 24 24 C 1.39006 * 120.03009 * 148.09277 * 11 9 7 25 25 C 1.38880 * 120.01776 * 0.23534 * 6 5 4 26 26 C 1.38034 * 120.00959 * 359.48542 * 25 6 5 27 27 H 1.09003 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47163 * 299.99930 * 1 2 3 29 29 H 1.08996 * 109.47099 * 59.99932 * 1 2 3 30 30 H 1.07999 * 120.00350 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.99569 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47039 * 274.88019 * 8 7 6 33 33 H 1.09008 * 109.46800 * 154.88316 * 8 7 6 34 34 H 1.08998 * 109.47516 * 34.88274 * 8 7 6 35 35 H 1.08003 * 119.82198 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79207 * 180.23938 * 13 12 11 37 37 H 1.07995 * 119.98065 * 179.75991 * 14 13 12 38 38 H 0.96998 * 120.00394 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.19806 * 359.95209 * 24 11 9 40 40 H 1.08008 * 119.99564 * 179.74688 * 25 6 5 41 41 H 1.08000 * 120.00594 * 180.25333 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5392 2.1232 0.0005 5 6 3.8493 3.4684 0.0011 6 6 2.8333 4.4154 0.0016 7 7 3.1484 5.7802 0.0027 8 6 4.5397 6.2109 -0.1560 9 6 2.1717 6.6972 0.1496 10 8 1.0350 6.3408 0.3924 11 6 2.4826 8.1364 0.0156 12 6 3.7374 8.6206 0.4017 13 6 4.0374 9.9650 0.2747 14 6 3.1012 10.8443 -0.2232 15 6 1.8317 10.3767 -0.6117 16 6 0.8685 11.2769 -1.1237 17 1 0.8640 12.3063 -0.7970 18 6 -0.0786 10.8338 -2.0537 19 7 -0.0911 9.5804 -2.4282 20 14 -1.3253 12.0321 -2.7604 21 1 -1.1005 13.3802 -2.1796 22 1 -1.1684 12.0969 -4.2357 23 1 -2.6976 11.5721 -2.4283 24 6 1.5267 9.0106 -0.4887 25 6 1.5052 4.0095 0.0065 26 6 1.1943 2.6646 0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.3291 1.3868 0.0005 31 1 4.8819 3.7844 0.0011 32 1 5.0350 6.2045 0.8150 33 1 4.5630 7.2193 -0.5691 34 1 5.0562 5.5293 -0.8319 35 1 4.4772 7.9403 0.7971 36 1 5.0101 10.3282 0.5720 37 1 3.3414 11.8932 -0.3157 38 1 -0.7473 9.2733 -3.0731 39 1 0.5556 8.6419 -0.7844 40 1 0.7154 4.7462 0.0111 41 1 0.1614 2.3491 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353091463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:50 Heat of formation + Delta-G solvation = 32.635713 kcal Electronic energy + Delta-G solvation = -24364.728299 eV Core-core repulsion = 20915.228884 eV Total energy + Delta-G solvation = -3449.499415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.02794 -39.79720 -38.74879 -36.93303 -35.54624 -32.69547 -32.22790 -31.34748 -30.76999 -29.63716 -28.29253 -27.18446 -25.11297 -23.81879 -22.77764 -22.60494 -20.88803 -19.35156 -18.85247 -18.32720 -17.58782 -17.18834 -16.79038 -16.57347 -16.11323 -15.85274 -15.54618 -15.20519 -14.95248 -14.72404 -14.66485 -14.49274 -14.31810 -14.09624 -13.73903 -13.69767 -13.58729 -13.31016 -13.02744 -12.85577 -12.79264 -12.29913 -12.28138 -11.97376 -11.80722 -11.62296 -11.45181 -11.34336 -11.13343 -10.41131 -10.02480 -9.73929 -9.47586 -9.28429 -8.54881 -8.13363 -6.44999 -0.03098 0.34579 0.50666 0.60895 0.99467 1.36468 1.44393 1.45717 1.51914 1.72776 1.92197 2.19296 2.69641 2.78020 3.49993 3.61915 3.85896 3.99594 4.08203 4.21761 4.25245 4.29410 4.38695 4.46464 4.50783 4.54279 4.62271 4.81612 4.85794 4.87984 4.95910 5.06094 5.09931 5.13606 5.26083 5.29203 5.36170 5.47348 5.50914 5.81305 5.90932 5.99600 6.08293 6.22181 6.29560 6.59630 6.88371 6.93316 7.02539 8.34496 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002977 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.597087 B = 9402.525689 C =10852.548064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.132 6.132 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.135 4.135 6 C 0.137 3.863 7 N -0.548 5.548 8 C 0.039 3.961 9 C 0.559 3.441 10 O -0.557 6.557 11 C -0.142 4.142 12 C -0.200 4.200 13 C -0.101 4.101 14 C -0.203 4.203 15 C 0.059 3.941 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.022 3.978 19 N -0.842 5.842 20 Si 0.989 3.011 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.271 1.271 24 C -0.125 4.125 25 C -0.176 4.176 26 C -0.113 4.113 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.111 0.889 38 H 0.282 0.718 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -14.341 2.712 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.109 5.891 3 C -0.236 4.236 4 C -0.098 4.098 5 C -0.156 4.156 6 C 0.041 3.959 7 N -0.268 5.268 8 C -0.101 4.101 9 C 0.353 3.647 10 O -0.438 6.438 11 C -0.145 4.145 12 C -0.219 4.219 13 C -0.119 4.119 14 C -0.223 4.223 15 C 0.056 3.944 16 C -0.522 4.522 17 H 0.100 0.900 18 C -0.190 4.190 19 N -0.469 5.469 20 Si 0.810 3.190 21 H -0.176 1.176 22 H -0.191 1.191 23 H -0.196 1.196 24 C -0.146 4.146 25 C -0.197 4.197 26 C -0.137 4.137 27 H 0.148 0.852 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.165 0.835 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.050 -15.643 2.683 17.796 hybrid contribution -1.946 1.744 -0.508 2.662 sum 6.104 -13.899 2.174 15.335 Atomic orbital electron populations 1.23756 0.92691 1.08418 1.06018 1.85162 1.08913 1.01912 1.93155 1.21847 0.96957 0.97144 1.07673 1.20843 0.94580 0.95483 0.98887 1.21045 0.99086 0.91424 1.04089 1.18336 0.94452 0.83017 1.00141 1.45437 1.09965 1.03555 1.67891 1.23088 0.78404 1.04331 1.04296 1.19128 0.83738 0.87058 0.74816 1.90407 1.23275 1.80974 1.49131 1.19630 0.97505 0.90655 1.06694 1.21562 0.95591 0.96736 1.08026 1.20990 0.99247 0.92788 0.98854 1.21546 0.93537 0.99592 1.07629 1.17988 0.93063 0.92361 0.90942 1.19887 1.12452 0.97601 1.22268 0.90030 1.26844 0.98894 0.97345 0.95876 1.69840 1.32943 1.17167 1.26990 0.85040 0.76966 0.78665 0.78324 1.17598 1.19110 1.19635 1.21748 0.98597 0.93998 1.00235 1.22349 0.97413 0.97533 1.02450 1.21225 0.99151 0.91972 1.01330 0.85219 0.89556 0.89630 0.82564 0.81820 0.88689 0.87531 0.88345 0.82597 0.83841 0.87110 0.90719 0.87076 0.83507 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.15 113.37 1.04 -1.11 16 2 S -0.13 -2.70 22.56 -56.49 -1.27 -3.97 16 3 C -0.12 -3.16 6.11 22.61 0.14 -3.02 16 4 C -0.07 -1.71 9.78 22.40 0.22 -1.49 16 5 C -0.13 -3.28 9.15 22.38 0.20 -3.07 16 6 C 0.14 4.52 6.49 38.13 0.25 4.76 16 7 N -0.55 -18.85 3.10 -657.57 -2.04 -20.89 16 8 C 0.04 0.91 7.97 127.77 1.02 1.93 16 9 C 0.56 24.83 7.35 86.79 0.64 25.47 16 10 O -0.56 -28.29 13.24 -3.94 -0.05 -28.34 16 11 C -0.14 -6.54 5.50 -20.14 -0.11 -6.65 16 12 C -0.20 -7.42 7.44 22.70 0.17 -7.25 16 13 C -0.10 -3.73 10.01 22.18 0.22 -3.51 16 14 C -0.20 -9.09 9.78 22.77 0.22 -8.87 16 15 C 0.06 3.11 5.59 -21.32 -0.12 2.99 16 16 C -0.49 -26.39 9.07 23.47 0.21 -26.18 16 17 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 18 C 0.02 1.15 5.41 85.26 0.46 1.61 16 19 N -0.84 -46.25 10.40 21.83 0.23 -46.03 16 20 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 21 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 24 C -0.13 -6.81 8.25 23.01 0.19 -6.62 16 25 C -0.18 -6.42 8.98 22.38 0.20 -6.22 16 26 C -0.11 -3.36 9.36 22.39 0.21 -3.15 16 27 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 29 H 0.08 1.32 7.74 -2.39 -0.02 1.30 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.16 2.78 6.47 -2.92 -0.02 2.76 16 32 H 0.09 1.70 7.54 -2.39 -0.02 1.68 16 33 H 0.11 2.83 4.53 -2.38 -0.01 2.82 16 34 H 0.10 1.75 6.82 -2.39 -0.02 1.73 16 35 H 0.16 4.36 4.75 -2.91 -0.01 4.35 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 39 H 0.11 6.80 5.74 -2.91 -0.02 6.78 16 40 H 0.15 6.45 4.68 -48.76 -0.23 6.23 16 41 H 0.13 3.48 5.87 -2.91 -0.02 3.46 16 Total: -1.00 -68.81 345.92 4.91 -63.90 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.86 Total: 34.24 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 5.16 Total: -40.38 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -1.81 Total: -66.92 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -1.27 Total: -3.97 kcal Total: -68.81 4.91 -63.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353091463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.536 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds