Wall clock time and date at job start Tue Mar 31 2020 15:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 117.00323 * 2 1 4 4 C 1.39176 * 119.85764 * 0.02562 * 3 2 1 5 5 C 1.36545 * 120.37489 * 180.02562 * 4 3 2 6 6 C 1.39896 * 120.08536 * 0.02562 * 5 4 3 7 7 C 1.47199 * 120.14179 * 179.97438 * 6 5 4 8 8 O 1.21656 * 119.99307 * 143.92349 * 7 6 5 9 9 N 1.34772 * 120.00118 * 323.92371 * 7 6 5 10 10 C 1.36921 * 120.00131 * 9.17303 * 9 7 6 11 11 H 1.08001 * 120.00239 * 307.94652 * 10 9 7 12 12 C 1.39000 * 119.99964 * 127.95474 * 10 9 7 13 13 N 1.31404 * 119.99814 * 153.17287 * 12 10 9 14 14 Si 1.86801 * 120.00230 * 333.16884 * 12 10 9 15 15 H 1.48494 * 109.47051 * 271.68014 * 14 12 10 16 16 H 1.48504 * 109.46898 * 31.68083 * 14 12 10 17 17 H 1.48500 * 109.47069 * 151.67995 * 14 12 10 18 18 C 1.46505 * 119.99685 * 189.17320 * 9 7 6 19 19 C 1.52995 * 117.49731 * 181.39625 * 18 9 7 20 20 C 1.52995 * 117.50002 * 112.73427 * 18 9 7 21 21 C 1.40387 * 119.71349 * 0.25462 * 6 5 4 22 22 O 1.35658 * 120.18119 * 179.70527 * 21 6 5 23 23 C 1.42898 * 116.99857 * 179.97438 * 22 21 6 24 24 F 1.39899 * 109.47304 * 300.00172 * 23 22 21 25 25 F 1.39910 * 109.47218 * 59.99870 * 23 22 21 26 26 C 1.38463 * 119.62635 * 359.44583 * 21 6 5 27 27 H 1.08994 * 109.47193 * 59.99320 * 1 2 3 28 28 H 1.08994 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46421 * 299.99618 * 1 2 3 30 30 H 1.07999 * 119.81399 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.96053 * 179.97438 * 5 4 3 32 32 H 0.96999 * 119.99653 * 180.02562 * 13 12 10 33 33 H 1.09003 * 115.55095 * 327.05844 * 18 9 7 34 34 H 1.09005 * 117.50133 * 359.97438 * 19 18 9 35 35 H 1.09005 * 117.50257 * 145.01623 * 19 18 9 36 36 H 1.08998 * 117.50252 * 214.97475 * 20 18 9 37 37 H 1.08998 * 117.49634 * 359.97438 * 20 18 9 38 38 H 1.09000 * 109.47461 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.03848 * 180.26879 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2844 2.3746 0.0005 5 6 1.8933 3.5967 0.0000 6 6 3.2895 3.6846 -0.0016 7 6 3.9473 5.0014 -0.0027 8 8 4.9816 5.1651 0.6165 9 7 3.4037 6.0256 -0.6897 10 6 2.1516 5.9001 -1.2293 11 1 1.9168 5.0538 -1.8578 12 6 1.1827 6.8619 -0.9682 13 7 0.2126 7.0681 -1.8302 14 14 1.2596 7.8615 0.6080 15 1 0.5328 7.1432 1.6855 16 1 2.6778 8.0483 1.0069 17 1 0.6294 9.1874 0.3846 18 6 4.1527 7.2733 -0.8591 19 6 3.4684 8.4101 -1.6208 20 6 4.6152 7.6333 -2.2723 21 6 4.0605 2.5114 -0.0081 22 8 5.4151 2.5855 -0.0158 23 6 6.1324 1.3496 -0.0215 24 9 5.8026 0.6137 1.1217 25 9 5.7895 0.6167 -1.1629 26 6 3.4307 1.2783 -0.0012 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 0.2062 2.3120 0.0005 31 1 1.2964 4.4968 0.0000 32 1 -0.4633 7.7396 -1.6482 33 1 4.8072 7.5449 -0.0308 34 1 2.4611 8.2296 -1.9962 35 1 3.6730 9.4297 -1.2939 36 1 5.5738 8.1421 -2.3739 37 1 4.3626 6.9416 -3.0760 38 1 7.2035 1.5512 -0.0278 39 1 4.0174 0.3715 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355164514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:29 Heat of formation + Delta-G solvation = -134.448797 kcal Electronic energy + Delta-G solvation = -29070.983790 eV Core-core repulsion = 24617.256647 eV Total energy + Delta-G solvation = -4453.727144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.22005 -47.20677 -40.30118 -39.02541 -38.46112 -36.39058 -35.85686 -33.34041 -31.87039 -30.41806 -29.63062 -27.23496 -25.92770 -25.20243 -23.22086 -22.25230 -21.62162 -20.96043 -19.42190 -18.89637 -18.11289 -17.77187 -17.29921 -16.99577 -16.58455 -15.69939 -15.59613 -15.30705 -15.13821 -14.57832 -14.32512 -14.03723 -13.95954 -13.68152 -13.51565 -13.37856 -13.18390 -13.13236 -12.60930 -12.49921 -12.36054 -12.06994 -11.96293 -11.84260 -11.57881 -11.18776 -11.00448 -10.60326 -10.57481 -10.51975 -10.08767 -9.88585 -9.48745 -9.03692 -8.59463 -8.34506 -7.78481 -7.46029 -6.61793 -4.27461 1.50328 1.75204 2.78300 3.10481 3.20937 3.31242 3.34006 3.59538 3.62607 4.09210 4.16577 4.34430 4.44081 4.57927 4.77469 5.02088 5.05719 5.22342 5.22647 5.34684 5.43561 5.52347 5.65753 5.72337 5.79501 5.84369 5.93920 6.08652 6.34538 6.39787 6.55420 6.58269 6.82591 6.90421 7.01959 7.10841 7.23552 7.39539 7.59752 8.05634 8.19675 8.86706 9.27865 9.65591 10.44272 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012884 B = 0.005402 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.657867 B = 5182.215494 C = 6655.861484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.171 3.829 4 C -0.247 4.247 5 C 0.009 3.991 6 C -0.155 4.155 7 C 0.544 3.456 8 O -0.576 6.576 9 N -0.439 5.439 10 C -0.363 4.363 11 H 0.101 0.899 12 C 0.087 3.913 13 N -0.845 5.845 14 Si 0.855 3.145 15 H -0.276 1.276 16 H -0.250 1.250 17 H -0.282 1.282 18 C 0.082 3.918 19 C -0.194 4.194 20 C -0.188 4.188 21 C 0.180 3.820 22 O -0.290 6.290 23 C 0.406 3.594 24 F -0.201 7.201 25 F -0.202 7.202 26 C -0.248 4.248 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.131 0.869 31 H 0.175 0.825 32 H 0.277 0.723 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.179 0.821 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -9.141 1.989 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.125 3.875 4 C -0.266 4.266 5 C -0.009 4.009 6 C -0.158 4.158 7 C 0.334 3.666 8 O -0.459 6.459 9 N -0.159 5.159 10 C -0.490 4.490 11 H 0.118 0.882 12 C -0.123 4.123 13 N -0.478 5.478 14 Si 0.679 3.321 15 H -0.201 1.201 16 H -0.173 1.173 17 H -0.207 1.207 18 C -0.023 4.023 19 C -0.232 4.232 20 C -0.227 4.227 21 C 0.135 3.865 22 O -0.206 6.206 23 C 0.316 3.684 24 F -0.183 7.183 25 F -0.183 7.183 26 C -0.267 4.267 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.195 0.805 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.557 -9.002 2.217 9.930 hybrid contribution -0.583 0.342 0.544 0.867 sum 2.974 -8.660 2.761 9.564 Atomic orbital electron populations 1.23067 0.78289 1.03556 1.01882 1.85973 1.21503 1.27271 1.88336 1.18802 0.91286 0.84155 0.93287 1.21013 1.00287 0.92049 1.13264 1.21801 0.93005 0.98946 0.87175 1.19205 0.93114 0.91496 1.12009 1.17971 0.84707 0.84497 0.79435 1.90657 1.26152 1.84414 1.44671 1.42855 1.14927 1.10555 1.47560 1.18850 0.85552 1.13021 1.31530 0.88194 1.25450 0.94720 0.95753 0.96383 1.69892 1.14300 1.31281 1.32343 0.87133 0.80464 0.79774 0.84712 1.20142 1.17292 1.20722 1.21624 0.98734 0.87763 0.94136 1.23532 1.00357 0.94686 1.04579 1.23207 0.97532 1.03919 0.98018 1.18484 0.80803 0.92811 0.94438 1.86827 1.17103 1.29173 1.87511 1.23435 0.97388 0.75851 0.71733 1.93080 1.94420 1.78650 1.52108 1.93089 1.94176 1.78838 1.52242 1.20371 0.93158 0.96642 1.16511 0.92262 0.88523 0.92438 0.85116 0.80790 0.91277 0.87091 0.85406 0.89991 0.89893 0.88767 0.80468 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.80 101.05 0.99 1.28 16 2 O -0.32 -4.82 10.48 -18.86 -0.20 -5.02 16 3 C 0.17 2.95 6.69 -39.06 -0.26 2.69 16 4 C -0.25 -4.30 8.96 -39.84 -0.36 -4.66 16 5 C 0.01 0.18 7.86 -39.57 -0.31 -0.13 16 6 C -0.15 -3.39 5.54 -104.83 -0.58 -3.97 16 7 C 0.54 13.21 7.18 -12.62 -0.09 13.12 16 8 O -0.58 -14.92 15.77 -12.16 -0.19 -15.12 16 9 N -0.44 -10.50 2.17 -109.02 -0.24 -10.74 16 10 C -0.36 -8.86 5.69 -15.00 -0.09 -8.94 16 11 H 0.10 2.61 6.97 -52.49 -0.37 2.24 16 12 C 0.09 2.10 2.97 -17.45 -0.05 2.05 16 13 N -0.85 -21.26 13.89 55.50 0.77 -20.49 16 14 Si 0.86 19.37 25.94 -169.99 -4.41 14.96 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.25 -5.78 6.02 56.52 0.34 -5.44 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 C 0.08 1.82 4.27 -67.93 -0.29 1.53 16 19 C -0.19 -3.97 7.59 -26.70 -0.20 -4.17 16 20 C -0.19 -3.67 10.39 -26.70 -0.28 -3.94 16 21 C 0.18 3.61 6.46 -38.69 -0.25 3.36 16 22 O -0.29 -5.42 9.10 -36.06 -0.33 -5.75 16 23 C 0.41 5.48 5.98 101.05 0.60 6.08 16 24 F -0.20 -2.87 15.57 2.25 0.04 -2.84 16 25 F -0.20 -2.88 15.60 2.25 0.04 -2.84 16 26 C -0.25 -4.49 8.19 -39.32 -0.32 -4.82 16 27 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 30 H 0.13 1.92 6.26 -52.49 -0.33 1.59 16 31 H 0.18 3.75 5.35 -52.48 -0.28 3.47 16 32 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.11 2.47 7.75 -51.93 -0.40 2.06 16 34 H 0.13 2.93 5.14 -51.93 -0.27 2.66 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.18 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.14 2.35 5.11 -52.48 -0.27 2.08 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -29.87 327.21 -5.09 -34.97 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.02 Total: 8.46 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.49 Total: -0.53 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.53 Total: -31.22 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.72 Total: -25.88 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.07 Total: -5.68 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.41 Total: 14.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.87 -5.09 -34.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355164514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.481 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds