Wall clock time and date at job start Tue Mar 31 2020 15:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 117.00323 * 2 1 4 4 C 1.39176 * 119.85764 * 0.02562 * 3 2 1 5 5 C 1.36545 * 120.37489 * 180.02562 * 4 3 2 6 6 C 1.39896 * 120.08536 * 0.02562 * 5 4 3 7 7 C 1.47199 * 120.14179 * 179.97438 * 6 5 4 8 8 O 1.21656 * 119.99307 * 143.92349 * 7 6 5 9 9 N 1.34772 * 120.00118 * 323.92371 * 7 6 5 10 10 C 1.36921 * 120.00131 * 9.17303 * 9 7 6 11 11 H 1.08001 * 120.00239 * 307.94652 * 10 9 7 12 12 C 1.39000 * 119.99964 * 127.95474 * 10 9 7 13 13 N 1.31404 * 119.99814 * 153.17287 * 12 10 9 14 14 Si 1.86801 * 120.00230 * 333.16884 * 12 10 9 15 15 H 1.48494 * 109.47051 * 271.68014 * 14 12 10 16 16 H 1.48504 * 109.46898 * 31.68083 * 14 12 10 17 17 H 1.48500 * 109.47069 * 151.67995 * 14 12 10 18 18 C 1.46505 * 119.99685 * 189.17320 * 9 7 6 19 19 C 1.52995 * 117.49731 * 181.39625 * 18 9 7 20 20 C 1.52995 * 117.50002 * 112.73427 * 18 9 7 21 21 C 1.40387 * 119.71349 * 0.25462 * 6 5 4 22 22 O 1.35658 * 120.18119 * 179.70527 * 21 6 5 23 23 C 1.42898 * 116.99857 * 179.97438 * 22 21 6 24 24 F 1.39899 * 109.47304 * 300.00172 * 23 22 21 25 25 F 1.39910 * 109.47218 * 59.99870 * 23 22 21 26 26 C 1.38463 * 119.62635 * 359.44583 * 21 6 5 27 27 H 1.08994 * 109.47193 * 59.99320 * 1 2 3 28 28 H 1.08994 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46421 * 299.99618 * 1 2 3 30 30 H 1.07999 * 119.81399 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.96053 * 179.97438 * 5 4 3 32 32 H 0.96999 * 119.99653 * 180.02562 * 13 12 10 33 33 H 1.09003 * 115.55095 * 327.05844 * 18 9 7 34 34 H 1.09005 * 117.50133 * 359.97438 * 19 18 9 35 35 H 1.09005 * 117.50257 * 145.01623 * 19 18 9 36 36 H 1.08998 * 117.50252 * 214.97475 * 20 18 9 37 37 H 1.08998 * 117.49634 * 359.97438 * 20 18 9 38 38 H 1.09000 * 109.47461 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.03848 * 180.26879 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2844 2.3746 0.0005 5 6 1.8933 3.5967 0.0000 6 6 3.2895 3.6846 -0.0016 7 6 3.9473 5.0014 -0.0027 8 8 4.9816 5.1651 0.6165 9 7 3.4037 6.0256 -0.6897 10 6 2.1516 5.9001 -1.2293 11 1 1.9168 5.0538 -1.8578 12 6 1.1827 6.8619 -0.9682 13 7 0.2126 7.0681 -1.8302 14 14 1.2596 7.8615 0.6080 15 1 0.5328 7.1432 1.6855 16 1 2.6778 8.0483 1.0069 17 1 0.6294 9.1874 0.3846 18 6 4.1527 7.2733 -0.8591 19 6 3.4684 8.4101 -1.6208 20 6 4.6152 7.6333 -2.2723 21 6 4.0605 2.5114 -0.0081 22 8 5.4151 2.5855 -0.0158 23 6 6.1324 1.3496 -0.0215 24 9 5.8026 0.6137 1.1217 25 9 5.7895 0.6167 -1.1629 26 6 3.4307 1.2783 -0.0012 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 0.2062 2.3120 0.0005 31 1 1.2964 4.4968 0.0000 32 1 -0.4633 7.7396 -1.6482 33 1 4.8072 7.5449 -0.0308 34 1 2.4611 8.2296 -1.9962 35 1 3.6730 9.4297 -1.2939 36 1 5.5738 8.1421 -2.3739 37 1 4.3626 6.9416 -3.0760 38 1 7.2035 1.5512 -0.0278 39 1 4.0174 0.3715 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355164514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:27 Heat of formation + Delta-G solvation = -152.264996 kcal Electronic energy + Delta-G solvation = -29071.756359 eV Core-core repulsion = 24617.256647 eV Total energy + Delta-G solvation = -4454.499712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.32611 -48.31380 -41.77195 -40.56050 -39.87729 -38.02431 -37.39739 -35.11914 -33.72764 -31.84633 -31.06490 -28.27940 -27.10650 -27.05396 -24.75468 -23.70568 -23.18631 -22.49686 -21.17373 -20.26899 -19.42264 -18.91285 -18.89011 -18.32682 -18.10251 -17.29983 -16.85068 -16.75177 -16.55311 -16.17694 -15.86029 -15.49124 -15.36914 -14.94784 -14.91770 -14.79710 -14.65786 -14.62657 -14.36680 -13.84491 -13.75104 -13.52923 -13.27810 -13.12280 -12.99452 -12.85206 -12.72585 -12.25417 -12.01470 -11.88436 -11.82075 -11.55969 -11.15268 -10.86947 -10.46032 -9.79197 -9.37633 -9.15492 -8.52253 -6.18467 0.00003 0.28701 1.27575 1.36606 1.50288 1.59203 1.90104 2.16648 2.26215 2.47730 2.54276 2.65023 2.87070 3.27437 3.51818 3.68514 3.73763 3.91940 4.00198 4.05412 4.17652 4.20876 4.26213 4.31874 4.41664 4.44338 4.60409 4.75525 4.80513 4.83416 4.97972 5.17841 5.19168 5.38465 5.44302 5.50585 5.58060 5.86319 6.14658 6.29429 6.31234 6.97328 7.41574 7.80718 8.57494 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012884 B = 0.005402 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.657867 B = 5182.215494 C = 6655.861484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.183 3.817 4 C -0.242 4.242 5 C 0.002 3.998 6 C -0.193 4.193 7 C 0.535 3.465 8 O -0.602 6.602 9 N -0.445 5.445 10 C -0.355 4.355 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.871 5.871 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.258 1.258 17 H -0.271 1.271 18 C 0.052 3.948 19 C -0.187 4.187 20 C -0.167 4.167 21 C 0.178 3.822 22 O -0.315 6.315 23 C 0.403 3.597 24 F -0.205 7.205 25 F -0.206 7.206 26 C -0.252 4.252 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.282 0.718 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.234 0.766 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -9.934 2.122 10.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.136 3.864 4 C -0.261 4.261 5 C -0.017 4.017 6 C -0.197 4.197 7 C 0.327 3.673 8 O -0.488 6.488 9 N -0.165 5.165 10 C -0.481 4.481 11 H 0.094 0.906 12 C -0.135 4.135 13 N -0.506 5.506 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.182 1.182 17 H -0.196 1.196 18 C -0.053 4.053 19 C -0.224 4.224 20 C -0.206 4.206 21 C 0.132 3.868 22 O -0.231 6.231 23 C 0.314 3.686 24 F -0.187 7.187 25 F -0.188 7.188 26 C -0.272 4.272 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.541 -9.801 2.339 10.680 hybrid contribution -0.603 0.424 0.485 0.882 sum 2.938 -9.377 2.824 10.224 Atomic orbital electron populations 1.23479 0.75709 1.06078 1.02715 1.85991 1.24084 1.25858 1.87576 1.18858 0.91188 0.84944 0.91425 1.21188 1.01680 0.90998 1.12233 1.21591 0.92410 0.99477 0.88174 1.19215 0.94047 0.91178 1.15214 1.18404 0.84533 0.85423 0.78952 1.90603 1.27299 1.85035 1.45821 1.42958 1.14899 1.11216 1.47401 1.18554 0.86248 1.12440 1.30881 0.90560 1.25638 0.94319 0.96135 0.97388 1.69903 1.15054 1.32285 1.33311 0.86581 0.79816 0.79415 0.82644 1.20401 1.18177 1.19603 1.21790 0.99987 0.87880 0.95601 1.23500 0.99443 0.95592 1.03912 1.23238 0.98776 1.02928 0.95626 1.18555 0.81641 0.92732 0.93871 1.86795 1.16556 1.32395 1.87377 1.24316 0.98843 0.74350 0.71115 1.93064 1.94588 1.78641 1.52440 1.93073 1.94355 1.78831 1.52572 1.20515 0.93863 0.96283 1.16495 0.91665 0.85311 0.91316 0.82342 0.82626 0.90744 0.87440 0.87736 0.87163 0.86417 0.90117 0.75082 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.80 113.37 1.11 1.37 16 2 O -0.32 -8.99 10.48 -90.39 -0.95 -9.94 16 3 C 0.18 6.08 6.69 22.61 0.15 6.23 16 4 C -0.24 -8.24 8.96 22.10 0.20 -8.04 16 5 C 0.00 0.08 7.86 22.28 0.17 0.25 16 6 C -0.19 -8.69 5.54 -20.00 -0.11 -8.80 16 7 C 0.54 26.78 7.18 86.60 0.62 27.40 16 8 O -0.60 -32.03 15.77 12.41 0.20 -31.83 16 9 N -0.44 -21.77 2.17 -617.06 -1.34 -23.10 16 10 C -0.35 -17.74 5.69 84.08 0.48 -17.26 16 11 H 0.08 4.15 6.97 -2.91 -0.02 4.13 16 12 C 0.07 3.58 2.97 84.94 0.25 3.84 16 13 N -0.87 -44.11 13.89 21.67 0.30 -43.81 16 14 Si 0.89 39.82 25.94 68.60 1.78 41.60 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -11.85 6.02 99.48 0.60 -11.25 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 C 0.05 2.28 4.27 44.99 0.19 2.48 16 19 C -0.19 -7.45 7.59 30.62 0.23 -7.22 16 20 C -0.17 -6.33 10.39 30.62 0.32 -6.02 16 21 C 0.18 7.19 6.46 22.85 0.15 7.34 16 22 O -0.31 -11.75 9.10 -73.12 -0.67 -12.42 16 23 C 0.40 10.27 5.98 113.37 0.68 10.95 16 24 F -0.21 -5.60 15.57 44.97 0.70 -4.90 16 25 F -0.21 -5.63 15.60 44.97 0.70 -4.93 16 26 C -0.25 -8.99 8.19 22.44 0.18 -8.81 16 27 H 0.06 1.15 7.65 -2.39 -0.02 1.13 16 28 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.14 7.65 -2.38 -0.02 1.12 16 30 H 0.16 4.36 6.26 -2.91 -0.02 4.34 16 31 H 0.16 6.95 5.35 -2.91 -0.02 6.94 16 32 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 33 H 0.11 4.79 7.75 -2.39 -0.02 4.78 16 34 H 0.10 4.75 5.14 -2.38 -0.01 4.74 16 35 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 36 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.23 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.15 4.89 5.11 -2.91 -0.01 4.88 16 Total: -1.00 -65.88 327.21 6.37 -59.52 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 1.01 Total: 26.12 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 4.63 Total: 3.69 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -1.04 Total: -66.91 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.42 Total: -54.19 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 1.40 Total: -9.83 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.78 Total: 41.60 kcal Total: -65.88 6.37 -59.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355164514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.747 kcal (2) G-P(sol) polarization free energy of solvation -65.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds