Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99997 * 2 1 4 4 O 1.20835 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00226 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47511 * 180.02562 * 5 3 2 7 7 C 1.37100 * 120.00393 * 84.19451 * 6 5 3 8 8 H 1.08000 * 119.99804 * 301.82753 * 7 6 5 9 9 C 1.38945 * 119.99910 * 121.54967 * 7 6 5 10 10 N 1.31411 * 120.00000 * 340.39929 * 9 7 6 11 11 Si 1.86799 * 120.00012 * 160.40150 * 9 7 6 12 12 H 1.48499 * 109.47450 * 89.99828 * 11 9 7 13 13 H 1.48502 * 109.47508 * 210.00187 * 11 9 7 14 14 H 1.48505 * 109.47298 * 330.00079 * 11 9 7 15 15 C 1.34783 * 119.99799 * 264.19866 * 6 5 3 16 16 O 1.21293 * 119.99928 * 183.31582 * 15 6 5 17 17 C 1.50699 * 120.00060 * 3.31745 * 15 6 5 18 18 H 1.08998 * 109.46728 * 325.04099 * 17 15 6 19 19 C 1.53002 * 109.46883 * 205.04531 * 17 15 6 20 20 C 1.50693 * 109.47458 * 85.04322 * 17 15 6 21 21 C 1.38263 * 119.96748 * 240.00478 * 20 17 15 22 22 C 1.38212 * 120.07276 * 179.97438 * 21 20 17 23 23 C 1.38415 * 119.99713 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.03111 * 180.02562 * 23 22 21 25 25 C 1.38642 * 119.93194 * 0.02562 * 23 22 21 26 26 F 1.35100 * 120.03566 * 179.97438 * 25 23 22 27 27 C 1.38214 * 119.96456 * 59.72674 * 20 17 15 28 28 H 1.09003 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47380 * 299.99651 * 1 2 3 30 30 H 1.09002 * 109.47377 * 59.99511 * 1 2 3 31 31 H 1.08999 * 109.47621 * 59.99996 * 5 3 2 32 32 H 1.09003 * 109.46865 * 299.99681 * 5 3 2 33 33 H 0.97002 * 119.99968 * 185.02275 * 10 9 7 34 34 H 1.09007 * 109.46701 * 184.83789 * 19 17 15 35 35 H 1.08999 * 109.47027 * 304.83626 * 19 17 15 36 36 H 1.08997 * 109.46909 * 64.83952 * 19 17 15 37 37 H 1.08001 * 119.96202 * 359.97189 * 21 20 17 38 38 H 1.07997 * 120.00009 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99901 * 359.97438 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.0614 3.3705 1.1818 8 1 3.1896 3.4640 1.8124 9 6 5.2652 3.9451 1.5706 10 7 6.3936 3.5272 1.0427 11 14 5.2794 5.3118 2.8440 12 1 5.4079 4.7226 4.2011 13 1 6.4284 6.2166 2.5863 14 1 4.0131 6.0827 2.7570 15 6 4.2854 3.2932 -1.1609 16 8 4.6869 4.4377 -1.1551 17 6 4.1260 2.5572 -2.4662 18 1 4.3712 1.5050 -2.3222 19 6 5.0667 3.1617 -3.5106 20 6 2.7015 2.6806 -2.9419 21 6 1.9340 1.5454 -3.1257 22 6 0.6270 1.6560 -3.5614 23 6 0.0850 2.9044 -3.8137 24 9 -1.1926 3.0134 -4.2391 25 6 0.8546 4.0428 -3.6294 26 9 0.3279 5.2623 -3.8756 27 6 2.1617 3.9289 -3.1885 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 7.2390 3.8763 1.3659 34 1 4.8905 2.6873 -4.4761 35 1 4.8790 4.2324 -3.5922 36 1 6.1005 2.9961 -3.2076 37 1 2.3562 0.5711 -2.9286 38 1 0.0287 0.7685 -3.7050 39 1 2.7607 4.8152 -3.0399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358574121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -169.758411 kcal Electronic energy + Delta-G solvation = -29541.079518 eV Core-core repulsion = 25085.821234 eV Total energy + Delta-G solvation = -4455.258283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.31564 -48.38954 -40.23036 -39.35608 -37.97460 -35.99084 -34.41597 -33.47776 -31.82751 -30.68828 -28.90805 -28.56728 -26.44341 -25.45646 -23.74471 -22.95757 -21.79803 -20.78491 -19.02235 -17.82275 -17.48363 -17.10376 -16.89712 -16.75473 -16.20198 -16.16094 -15.82345 -15.41583 -14.92133 -14.81004 -14.61108 -14.33421 -14.08546 -13.92389 -13.35022 -13.17828 -13.06766 -12.90067 -12.63151 -12.38206 -12.03173 -11.82673 -11.72458 -11.53604 -11.44092 -11.26860 -10.94066 -10.91333 -10.77792 -10.56329 -10.41892 -10.26656 -9.95579 -8.95994 -8.77392 -8.67200 -8.18375 -7.32496 -6.27907 -4.12666 1.02420 1.13994 2.79217 3.03896 3.24285 3.34977 3.41875 3.44992 3.87771 3.97369 4.23598 4.44562 4.58818 4.73877 4.85976 5.04396 5.10844 5.23031 5.27831 5.32996 5.36186 5.41473 5.50509 5.61946 5.70887 5.76517 5.86403 5.98608 6.01328 6.06232 6.09563 6.15934 6.31440 6.48218 6.66340 6.79727 6.87680 7.58685 8.18000 8.37009 8.88357 8.92117 9.41502 9.99709 10.80720 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.005484 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.884458 B = 5104.274707 C = 5907.885371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.432 3.568 4 O -0.483 6.483 5 C 0.111 3.889 6 N -0.430 5.430 7 C -0.349 4.349 8 H 0.076 0.924 9 C 0.082 3.918 10 N -0.848 5.848 11 Si 0.914 3.086 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.509 3.491 16 O -0.529 6.529 17 C -0.083 4.083 18 H 0.093 0.907 19 C -0.127 4.127 20 C -0.035 4.035 21 C -0.103 4.103 22 C -0.124 4.124 23 C 0.057 3.943 24 F -0.135 7.135 25 C 0.073 3.927 26 F -0.131 7.131 27 C -0.103 4.103 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.267 0.733 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -9.519 -8.191 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.272 3.728 4 O -0.367 6.367 5 C -0.016 4.016 6 N -0.152 5.152 7 C -0.476 4.476 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.481 5.481 11 Si 0.740 3.260 12 H -0.206 1.206 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.296 3.704 16 O -0.406 6.406 17 C -0.105 4.105 18 H 0.111 0.889 19 C -0.184 4.184 20 C -0.036 4.036 21 C -0.121 4.121 22 C -0.143 4.143 23 C 0.037 3.963 24 F -0.114 7.114 25 C 0.053 3.947 26 F -0.110 7.110 27 C -0.122 4.122 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.148 -8.455 -8.248 13.806 hybrid contribution -0.601 0.772 0.654 1.176 sum -7.749 -7.683 -7.594 13.295 Atomic orbital electron populations 1.23111 0.77840 1.02686 1.02194 1.86526 1.22343 1.34774 1.85044 1.25279 0.93529 0.81171 0.72805 1.90675 1.66639 1.36139 1.43274 1.21283 0.85546 0.89899 1.04845 1.42820 1.60733 1.05833 1.05861 1.18899 0.95674 1.34237 0.98800 0.90640 1.25431 0.94801 0.96412 0.96175 1.69812 0.97600 1.40127 1.40552 0.86186 0.78393 0.81743 0.79635 1.20631 1.20797 1.19295 1.19845 0.80201 0.86799 0.83548 1.90538 1.46085 1.18083 1.85889 1.20538 0.91409 1.02049 0.96503 0.88888 1.21608 0.98854 1.01824 0.96137 1.19488 0.95528 0.92142 0.96403 1.20981 0.93047 0.98786 0.99327 1.20891 0.96389 0.95397 1.01577 1.17611 0.79981 0.93749 1.04953 1.91489 1.35268 1.96900 1.87717 1.17623 0.93074 0.79388 1.04657 1.91508 1.86508 1.40913 1.92058 1.21051 0.92836 0.99952 0.98357 0.88839 0.92419 0.92452 0.88674 0.86979 0.92273 0.92711 0.91342 0.91571 0.84489 0.84059 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.40 10.57 -39.24 -0.41 -5.82 16 3 C 0.43 7.75 6.49 36.00 0.23 7.98 16 4 O -0.48 -10.36 16.06 -18.76 -0.30 -10.66 16 5 C 0.11 2.04 5.87 -5.20 -0.03 2.01 16 6 N -0.43 -10.20 1.90 -116.10 -0.22 -10.42 16 7 C -0.35 -9.41 8.72 -14.93 -0.13 -9.54 16 8 H 0.08 2.09 7.91 -52.49 -0.42 1.68 16 9 C 0.08 2.23 4.48 -17.47 -0.08 2.15 16 10 N -0.85 -23.53 13.05 55.50 0.72 -22.81 16 11 Si 0.91 21.71 29.60 -169.99 -5.03 16.68 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 11.87 5.90 -10.98 -0.06 11.81 16 16 O -0.53 -14.47 14.96 5.55 0.08 -14.39 16 17 C -0.08 -1.44 2.25 -92.93 -0.21 -1.65 16 18 H 0.09 1.37 5.68 -51.93 -0.29 1.07 16 19 C -0.13 -2.00 8.57 37.16 0.32 -1.68 16 20 C -0.03 -0.56 4.60 -104.63 -0.48 -1.04 16 21 C -0.10 -1.38 8.34 -39.58 -0.33 -1.71 16 22 C -0.12 -1.60 10.02 -39.53 -0.40 -1.99 16 23 C 0.06 0.87 7.31 -39.37 -0.29 0.59 16 24 F -0.14 -2.06 17.18 2.25 0.04 -2.03 16 25 C 0.07 1.23 7.31 -39.37 -0.29 0.95 16 26 F -0.13 -2.31 17.18 2.25 0.04 -2.27 16 27 C -0.10 -1.81 8.84 -39.52 -0.35 -2.16 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.10 1.43 5.67 -51.93 -0.29 1.13 16 32 H 0.11 2.00 8.09 -51.93 -0.42 1.58 16 33 H 0.27 7.08 8.32 -40.82 -0.34 6.74 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.17 7.12 -51.93 -0.37 0.80 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.14 1.47 7.94 -52.49 -0.42 1.05 16 38 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.15 2.80 7.64 -52.48 -0.40 2.40 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -33.25 348.19 -5.15 -38.39 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.28 Total: 0.86 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.03 Total: 7.21 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.50 Total: -33.23 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.63 Total: -30.87 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.25 -5.15 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358574121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.365 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds