Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 116.99997 * 2 1 4 4 O 1.20835 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00226 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47511 * 180.02562 * 5 3 2 7 7 C 1.37100 * 120.00393 * 84.19451 * 6 5 3 8 8 H 1.08000 * 119.99804 * 301.82753 * 7 6 5 9 9 C 1.38945 * 119.99910 * 121.54967 * 7 6 5 10 10 N 1.31411 * 120.00000 * 340.39929 * 9 7 6 11 11 Si 1.86799 * 120.00012 * 160.40150 * 9 7 6 12 12 H 1.48499 * 109.47450 * 89.99828 * 11 9 7 13 13 H 1.48502 * 109.47508 * 210.00187 * 11 9 7 14 14 H 1.48505 * 109.47298 * 330.00079 * 11 9 7 15 15 C 1.34783 * 119.99799 * 264.19866 * 6 5 3 16 16 O 1.21293 * 119.99928 * 183.31582 * 15 6 5 17 17 C 1.50699 * 120.00060 * 3.31745 * 15 6 5 18 18 H 1.08998 * 109.46728 * 325.04099 * 17 15 6 19 19 C 1.53002 * 109.46883 * 205.04531 * 17 15 6 20 20 C 1.50693 * 109.47458 * 85.04322 * 17 15 6 21 21 C 1.38263 * 119.96748 * 240.00478 * 20 17 15 22 22 C 1.38212 * 120.07276 * 179.97438 * 21 20 17 23 23 C 1.38415 * 119.99713 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.03111 * 180.02562 * 23 22 21 25 25 C 1.38642 * 119.93194 * 0.02562 * 23 22 21 26 26 F 1.35100 * 120.03566 * 179.97438 * 25 23 22 27 27 C 1.38214 * 119.96456 * 59.72674 * 20 17 15 28 28 H 1.09003 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47380 * 299.99651 * 1 2 3 30 30 H 1.09002 * 109.47377 * 59.99511 * 1 2 3 31 31 H 1.08999 * 109.47621 * 59.99996 * 5 3 2 32 32 H 1.09003 * 109.46865 * 299.99681 * 5 3 2 33 33 H 0.97002 * 119.99968 * 185.02275 * 10 9 7 34 34 H 1.09007 * 109.46701 * 184.83789 * 19 17 15 35 35 H 1.08999 * 109.47027 * 304.83626 * 19 17 15 36 36 H 1.08997 * 109.46909 * 64.83952 * 19 17 15 37 37 H 1.08001 * 119.96202 * 359.97189 * 21 20 17 38 38 H 1.07997 * 120.00009 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.99901 * 359.97438 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.0614 3.3705 1.1818 8 1 3.1896 3.4640 1.8124 9 6 5.2652 3.9451 1.5706 10 7 6.3936 3.5272 1.0427 11 14 5.2794 5.3118 2.8440 12 1 5.4079 4.7226 4.2011 13 1 6.4284 6.2166 2.5863 14 1 4.0131 6.0827 2.7570 15 6 4.2854 3.2932 -1.1609 16 8 4.6869 4.4377 -1.1551 17 6 4.1260 2.5572 -2.4662 18 1 4.3712 1.5050 -2.3222 19 6 5.0667 3.1617 -3.5106 20 6 2.7015 2.6806 -2.9419 21 6 1.9340 1.5454 -3.1257 22 6 0.6270 1.6560 -3.5614 23 6 0.0850 2.9044 -3.8137 24 9 -1.1926 3.0134 -4.2391 25 6 0.8546 4.0428 -3.6294 26 9 0.3279 5.2623 -3.8756 27 6 2.1617 3.9289 -3.1885 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 7.2390 3.8763 1.3659 34 1 4.8905 2.6873 -4.4761 35 1 4.8790 4.2324 -3.5922 36 1 6.1005 2.9961 -3.2076 37 1 2.3562 0.5711 -2.9286 38 1 0.0287 0.7685 -3.7050 39 1 2.7607 4.8152 -3.0399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358574121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -189.272814 kcal Electronic energy + Delta-G solvation = -29541.925726 eV Core-core repulsion = 25085.821234 eV Total energy + Delta-G solvation = -4456.104492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.56961 -49.65159 -41.66385 -40.70271 -39.47468 -37.36995 -36.17298 -34.96437 -33.70359 -31.87996 -30.13971 -29.95617 -27.82605 -27.04960 -25.19567 -24.19488 -23.22608 -22.14168 -20.65667 -19.16737 -18.92136 -18.52109 -18.26867 -18.11782 -17.55602 -17.42759 -17.17809 -17.02900 -16.68716 -16.08408 -16.03723 -15.80611 -15.56816 -15.06383 -14.71143 -14.58120 -14.46653 -14.32230 -14.05188 -13.63610 -13.54796 -13.29535 -13.02806 -12.90026 -12.79211 -12.75797 -12.71680 -12.64076 -12.23829 -12.16880 -11.93791 -11.61165 -11.44818 -10.74409 -10.37449 -10.08249 -9.62223 -9.20516 -8.31275 -6.18680 -0.18470 -0.03262 1.32324 1.39831 1.40562 1.48049 1.73361 2.16816 2.25039 2.49475 2.73317 3.01168 3.10733 3.23739 3.46262 3.61279 3.91472 3.98570 4.02085 4.10934 4.20302 4.25073 4.42156 4.45744 4.49581 4.66743 4.68754 4.77800 4.81250 4.82428 4.91211 4.93793 5.04590 5.24961 5.39955 5.47891 5.52175 5.69537 6.23348 6.93948 6.98073 7.05931 7.51848 8.15585 8.76630 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.005484 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.884458 B = 5104.274707 C = 5907.885371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.445 3.555 4 O -0.524 6.524 5 C 0.106 3.894 6 N -0.447 5.447 7 C -0.362 4.362 8 H 0.056 0.944 9 C 0.043 3.957 10 N -0.872 5.872 11 Si 0.959 3.041 12 H -0.257 1.257 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.497 3.503 16 O -0.586 6.586 17 C -0.072 4.072 18 H 0.129 0.871 19 C -0.123 4.123 20 C -0.043 4.043 21 C -0.090 4.090 22 C -0.105 4.105 23 C 0.054 3.946 24 F -0.136 7.136 25 C 0.048 3.952 26 F -0.144 7.144 27 C -0.123 4.123 28 H 0.138 0.862 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.267 0.733 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -13.291 -9.015 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.287 3.713 4 O -0.412 6.412 5 C -0.019 4.019 6 N -0.168 5.168 7 C -0.490 4.490 8 H 0.074 0.926 9 C -0.164 4.164 10 N -0.506 5.506 11 Si 0.784 3.216 12 H -0.181 1.181 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.286 3.714 16 O -0.467 6.467 17 C -0.093 4.093 18 H 0.146 0.854 19 C -0.180 4.180 20 C -0.044 4.044 21 C -0.107 4.107 22 C -0.123 4.123 23 C 0.034 3.966 24 F -0.114 7.114 25 C 0.028 3.972 26 F -0.123 7.123 27 C -0.142 4.142 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.196 0.804 38 H 0.203 0.797 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.246 -12.290 -9.057 17.351 hybrid contribution -0.410 1.872 0.887 2.112 sum -8.656 -10.417 -8.170 15.817 Atomic orbital electron populations 1.23473 0.75699 1.05450 1.01829 1.86501 1.24167 1.32315 1.84183 1.24917 0.93143 0.81466 0.71817 1.90687 1.67388 1.37753 1.45353 1.21431 0.86388 0.86953 1.07175 1.42977 1.60840 1.07931 1.05084 1.18866 0.94938 1.35454 0.99719 0.92593 1.25998 0.94726 0.97751 0.97948 1.69847 0.97761 1.41167 1.41835 0.85503 0.77264 0.79596 0.79259 1.18150 1.21047 1.20872 1.20850 0.78576 0.86612 0.85384 1.90495 1.48372 1.20744 1.87075 1.20478 0.92701 1.02948 0.93210 0.85363 1.21596 0.98025 1.00677 0.97740 1.19463 0.95174 0.92542 0.97255 1.21405 0.92760 0.99274 0.97305 1.21359 0.96339 0.95588 0.99040 1.17830 0.79838 0.94083 1.04880 1.91489 1.35254 1.96958 1.87718 1.17854 0.93428 0.79744 1.06151 1.91463 1.86630 1.41894 1.92339 1.20927 0.93168 1.00020 1.00061 0.84431 0.93662 0.92120 0.84514 0.86466 0.92346 0.88707 0.93872 0.92433 0.80412 0.79686 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -8.85 10.57 -51.37 -0.54 -9.39 16 3 C 0.44 14.77 6.49 71.23 0.46 15.23 16 4 O -0.52 -21.91 16.06 21.94 0.35 -21.56 16 5 C 0.11 3.66 5.87 85.63 0.50 4.16 16 6 N -0.45 -21.18 1.90 -639.61 -1.22 -22.39 16 7 C -0.36 -20.00 8.72 84.04 0.73 -19.26 16 8 H 0.06 3.23 7.91 -2.91 -0.02 3.20 16 9 C 0.04 2.39 4.48 84.93 0.38 2.77 16 10 N -0.87 -49.32 13.05 21.66 0.28 -49.04 16 11 Si 0.96 45.62 29.60 68.60 2.03 47.66 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 14 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 15 C 0.50 23.41 5.90 87.66 0.52 23.93 16 16 O -0.59 -33.59 14.96 -3.07 -0.05 -33.64 16 17 C -0.07 -2.37 2.25 -12.29 -0.03 -2.40 16 18 H 0.13 3.22 5.68 -2.39 -0.01 3.21 16 19 C -0.12 -3.78 8.57 71.98 0.62 -3.17 16 20 C -0.04 -1.32 4.60 -19.87 -0.09 -1.41 16 21 C -0.09 -1.98 8.34 22.27 0.19 -1.80 16 22 C -0.11 -2.22 10.02 22.31 0.22 -2.00 16 23 C 0.05 1.53 7.31 22.41 0.16 1.70 16 24 F -0.14 -3.87 17.18 44.97 0.77 -3.10 16 25 C 0.05 1.65 7.31 22.41 0.16 1.81 16 26 F -0.14 -5.30 17.18 44.97 0.77 -4.53 16 27 C -0.12 -4.39 8.84 22.31 0.20 -4.19 16 28 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.14 3.49 5.67 -2.39 -0.01 3.47 16 32 H 0.12 3.95 8.09 -2.39 -0.02 3.93 16 33 H 0.27 14.45 8.32 -92.71 -0.77 13.68 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.04 1.53 7.12 -2.39 -0.02 1.51 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.18 2.51 7.94 -2.91 -0.02 2.49 16 38 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.12 4.95 7.64 -2.91 -0.02 4.93 16 Total: -1.00 -77.88 348.19 8.73 -69.15 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.10 Total: 9.71 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 5.22 Total: 17.12 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -0.93 Total: -71.43 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -0.24 Total: -64.59 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 1.55 Total: -7.63 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.66 kcal Total: -77.88 8.73 -69.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358574121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.121 kcal (2) G-P(sol) polarization free energy of solvation -77.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds