Wall clock time and date at job start Tue Mar 31 2020 15:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00011 * 2 1 4 4 O 1.20821 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99694 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47187 * 180.02562 * 5 3 2 7 7 C 1.37098 * 120.00087 * 95.43330 * 6 5 3 8 8 H 1.07998 * 119.99998 * 223.48811 * 7 6 5 9 9 C 1.38950 * 119.99850 * 43.49081 * 7 6 5 10 10 N 1.31410 * 119.99866 * 16.68734 * 9 7 6 11 11 Si 1.86802 * 119.99623 * 196.69107 * 9 7 6 12 12 H 1.48497 * 109.47507 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47147 * 119.99958 * 11 9 7 14 14 H 1.48501 * 109.47018 * 239.99576 * 11 9 7 15 15 C 1.34780 * 120.00108 * 275.43998 * 6 5 3 16 16 O 1.21295 * 119.99630 * 4.55650 * 15 6 5 17 17 C 1.50693 * 120.00227 * 184.56654 * 15 6 5 18 18 H 1.09002 * 109.46756 * 324.37532 * 17 15 6 19 19 C 1.53000 * 109.47701 * 84.37684 * 17 15 6 20 20 C 1.50704 * 109.47275 * 204.38057 * 17 15 6 21 21 C 1.38260 * 119.95893 * 299.72140 * 20 17 15 22 22 C 1.38213 * 120.06702 * 179.72530 * 21 20 17 23 23 C 1.38414 * 119.99870 * 0.54905 * 22 21 20 24 24 F 1.35103 * 120.03577 * 179.75047 * 23 22 21 25 25 C 1.38642 * 119.93149 * 359.72613 * 23 22 21 26 26 F 1.35100 * 120.03862 * 180.02562 * 25 23 22 27 27 C 1.38208 * 119.96645 * 119.99687 * 20 17 15 28 28 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47458 * 299.99885 * 1 2 3 30 30 H 1.09001 * 109.47118 * 59.99843 * 1 2 3 31 31 H 1.09001 * 109.47412 * 60.00562 * 5 3 2 32 32 H 1.08999 * 109.47880 * 300.00392 * 5 3 2 33 33 H 0.97003 * 119.99684 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47402 * 182.01436 * 19 17 15 35 35 H 1.08999 * 109.46717 * 302.01333 * 19 17 15 36 36 H 1.08998 * 109.47019 * 62.00737 * 19 17 15 37 37 H 1.07998 * 119.96603 * 0.02562 * 21 20 17 38 38 H 1.08000 * 120.00144 * 180.27617 * 22 21 20 39 39 H 1.07997 * 120.00575 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2835 3.3048 1.1833 8 1 3.9238 4.3055 1.3721 9 6 5.0521 2.6510 2.1385 10 7 5.7581 1.5946 1.8031 11 14 5.0818 3.2737 3.8994 12 1 4.2088 4.4692 4.0165 13 1 4.5885 2.2089 4.8094 14 1 6.4723 3.6383 4.2721 15 6 4.0672 3.3575 -1.1607 16 8 3.7214 2.8307 -2.1971 17 6 4.5925 4.7699 -1.1721 18 1 4.2704 5.2846 -0.2669 19 6 6.1213 4.7451 -1.2280 20 6 4.0573 5.4952 -2.3798 21 6 4.3427 5.0270 -3.6490 22 6 3.8483 5.6872 -4.7581 23 6 3.0761 6.8249 -4.5990 24 9 2.5967 7.4737 -5.6828 25 6 2.7947 7.2976 -3.3264 26 9 2.0408 8.4076 -3.1687 27 6 3.2866 6.6309 -2.2176 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 6.2943 1.1379 2.4701 34 1 6.5025 5.7658 -1.2002 35 1 6.5071 4.1897 -0.3732 36 1 6.4433 4.2619 -2.1505 37 1 4.9485 4.1417 -3.7738 38 1 4.0682 5.3180 -5.7489 39 1 3.0684 6.9985 -1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358574122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:23 Heat of formation + Delta-G solvation = -181.172094 kcal Electronic energy + Delta-G solvation = -28331.246771 eV Core-core repulsion = 23875.493553 eV Total energy + Delta-G solvation = -4455.753218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.27018 -48.34991 -40.00389 -39.40672 -38.00101 -35.81262 -34.85094 -33.37854 -31.76091 -30.66158 -29.13956 -28.34749 -26.51597 -25.03503 -23.90786 -23.02501 -21.76978 -20.39160 -19.28532 -17.80941 -17.38545 -17.08288 -16.95828 -16.47341 -16.12723 -16.01478 -15.72054 -15.38885 -14.94064 -14.78099 -14.43053 -14.32361 -14.13986 -13.79276 -13.69379 -13.13391 -12.94896 -12.82317 -12.61925 -12.32043 -11.85273 -11.81694 -11.62433 -11.42208 -11.39764 -11.31187 -11.04583 -10.95757 -10.85914 -10.53491 -10.34032 -10.27557 -9.77595 -9.34896 -8.94432 -8.58287 -8.32947 -7.75537 -6.60317 -4.37068 1.15402 1.25000 2.99686 3.02576 3.12361 3.15532 3.19345 3.60773 3.75960 3.97773 4.01841 4.43991 4.58745 4.76963 4.81681 4.99170 5.25240 5.40023 5.41640 5.48229 5.57106 5.70559 5.76707 5.84111 5.89489 5.96506 6.05674 6.13520 6.26885 6.31128 6.38103 6.41272 6.60936 6.74610 6.84444 6.97676 6.99518 7.26745 7.63490 8.11716 8.52217 8.86649 9.19429 9.64657 10.44099 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.004359 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.111386 B = 6422.636614 C = 7604.792015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.444 3.556 4 O -0.504 6.504 5 C 0.132 3.868 6 N -0.423 5.423 7 C -0.339 4.339 8 H 0.091 0.909 9 C 0.049 3.951 10 N -0.861 5.861 11 Si 0.914 3.086 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.499 3.501 16 O -0.591 6.591 17 C -0.055 4.055 18 H 0.104 0.896 19 C -0.128 4.128 20 C -0.039 4.039 21 C -0.058 4.058 22 C -0.132 4.132 23 C 0.054 3.946 24 F -0.137 7.137 25 C 0.058 3.942 26 F -0.135 7.135 27 C -0.121 4.121 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.273 0.727 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 2.639 -4.279 5.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.286 3.714 4 O -0.390 6.390 5 C 0.006 3.994 6 N -0.141 5.141 7 C -0.467 4.467 8 H 0.108 0.892 9 C -0.158 4.158 10 N -0.496 5.496 11 Si 0.740 3.260 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.288 3.712 16 O -0.475 6.475 17 C -0.077 4.077 18 H 0.122 0.878 19 C -0.186 4.186 20 C -0.039 4.039 21 C -0.076 4.076 22 C -0.151 4.151 23 C 0.034 3.966 24 F -0.116 7.116 25 C 0.038 3.962 26 F -0.114 7.114 27 C -0.140 4.140 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.306 2.595 -4.718 5.541 hybrid contribution -0.642 0.558 0.925 1.256 sum -1.948 3.153 -3.793 5.303 Atomic orbital electron populations 1.23088 0.78100 1.02613 1.01982 1.86547 1.22228 1.34921 1.84953 1.25366 0.93657 0.80860 0.71535 1.90578 1.67034 1.36416 1.44947 1.20928 0.84006 0.88007 1.06470 1.42903 1.57000 1.08532 1.05692 1.19413 1.31895 1.02129 0.93257 0.89167 1.25474 0.93450 0.96404 1.00517 1.69878 1.24836 1.20105 1.34802 0.86063 0.78367 0.79348 0.82205 1.19002 1.20376 1.20366 1.20182 0.79778 0.87898 0.83309 1.90549 1.53629 1.70658 1.32655 1.20032 0.97525 0.94345 0.95755 0.87772 1.21611 0.91845 1.01821 1.03315 1.19658 0.95482 0.93382 0.95419 1.21065 0.97903 0.98183 0.90489 1.21050 0.98874 0.94198 1.00990 1.17660 1.01844 0.95353 0.81704 1.91481 1.86700 1.80607 1.52788 1.17555 0.98372 0.87338 0.92948 1.91488 1.73811 1.49770 1.96340 1.21000 0.98839 0.96185 0.97960 0.88913 0.92497 0.92536 0.88380 0.84633 0.91626 0.92557 0.89869 0.92797 0.83742 0.84087 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.98 10.56 -39.25 -0.41 -7.40 16 3 C 0.44 9.78 7.99 36.00 0.29 10.07 16 4 O -0.50 -12.33 16.06 -18.75 -0.30 -12.63 16 5 C 0.13 2.93 5.43 -5.20 -0.03 2.90 16 6 N -0.42 -9.80 2.02 -116.10 -0.23 -10.04 16 7 C -0.34 -7.85 8.17 -14.93 -0.12 -7.97 16 8 H 0.09 2.06 6.77 -52.49 -0.36 1.70 16 9 C 0.05 1.10 4.97 -17.47 -0.09 1.01 16 10 N -0.86 -20.15 11.70 55.50 0.65 -19.50 16 11 Si 0.91 18.01 29.58 -169.99 -5.03 12.98 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 15 C 0.50 11.11 6.53 -10.99 -0.07 11.03 16 16 O -0.59 -14.08 14.30 5.54 0.08 -14.00 16 17 C -0.06 -1.01 2.24 -92.92 -0.21 -1.22 16 18 H 0.10 1.88 6.24 -51.93 -0.32 1.56 16 19 C -0.13 -2.08 9.01 37.16 0.33 -1.74 16 20 C -0.04 -0.65 4.64 -104.62 -0.49 -1.14 16 21 C -0.06 -0.93 7.86 -39.58 -0.31 -1.24 16 22 C -0.13 -1.92 10.02 -39.53 -0.40 -2.31 16 23 C 0.05 0.85 7.31 -39.37 -0.29 0.56 16 24 F -0.14 -2.13 17.18 2.25 0.04 -2.09 16 25 C 0.06 0.93 7.31 -39.37 -0.29 0.64 16 26 F -0.14 -2.19 17.18 2.25 0.04 -2.15 16 27 C -0.12 -1.92 9.65 -39.53 -0.38 -2.30 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 31 H 0.10 2.13 7.66 -51.93 -0.40 1.73 16 32 H 0.14 3.08 5.89 -51.93 -0.31 2.77 16 33 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 36 H 0.05 0.83 7.30 -51.93 -0.38 0.45 16 37 H 0.14 2.31 6.89 -52.49 -0.36 1.95 16 38 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.14 2.04 7.94 -52.49 -0.42 1.62 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -28.03 347.16 -5.12 -33.15 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.20 Total: 6.56 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.98 Total: 9.89 kcal Atomic # 7 Polarization: -29.95 SS G_CDS: 0.41 Total: -29.54 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.64 Total: -34.03 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.03 -5.12 -33.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358574122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.021 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds