Wall clock time and date at job start Tue Mar 31 2020 15:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 117.00011 * 2 1 4 4 O 1.20821 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99694 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47187 * 180.02562 * 5 3 2 7 7 C 1.37098 * 120.00087 * 95.43330 * 6 5 3 8 8 H 1.07998 * 119.99998 * 223.48811 * 7 6 5 9 9 C 1.38950 * 119.99850 * 43.49081 * 7 6 5 10 10 N 1.31410 * 119.99866 * 16.68734 * 9 7 6 11 11 Si 1.86802 * 119.99623 * 196.69107 * 9 7 6 12 12 H 1.48497 * 109.47507 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47147 * 119.99958 * 11 9 7 14 14 H 1.48501 * 109.47018 * 239.99576 * 11 9 7 15 15 C 1.34780 * 120.00108 * 275.43998 * 6 5 3 16 16 O 1.21295 * 119.99630 * 4.55650 * 15 6 5 17 17 C 1.50693 * 120.00227 * 184.56654 * 15 6 5 18 18 H 1.09002 * 109.46756 * 324.37532 * 17 15 6 19 19 C 1.53000 * 109.47701 * 84.37684 * 17 15 6 20 20 C 1.50704 * 109.47275 * 204.38057 * 17 15 6 21 21 C 1.38260 * 119.95893 * 299.72140 * 20 17 15 22 22 C 1.38213 * 120.06702 * 179.72530 * 21 20 17 23 23 C 1.38414 * 119.99870 * 0.54905 * 22 21 20 24 24 F 1.35103 * 120.03577 * 179.75047 * 23 22 21 25 25 C 1.38642 * 119.93149 * 359.72613 * 23 22 21 26 26 F 1.35100 * 120.03862 * 180.02562 * 25 23 22 27 27 C 1.38208 * 119.96645 * 119.99687 * 20 17 15 28 28 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47458 * 299.99885 * 1 2 3 30 30 H 1.09001 * 109.47118 * 59.99843 * 1 2 3 31 31 H 1.09001 * 109.47412 * 60.00562 * 5 3 2 32 32 H 1.08999 * 109.47880 * 300.00392 * 5 3 2 33 33 H 0.97003 * 119.99684 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47402 * 182.01436 * 19 17 15 35 35 H 1.08999 * 109.46717 * 302.01333 * 19 17 15 36 36 H 1.08998 * 109.47019 * 62.00737 * 19 17 15 37 37 H 1.07998 * 119.96603 * 0.02562 * 21 20 17 38 38 H 1.08000 * 120.00144 * 180.27617 * 22 21 20 39 39 H 1.07997 * 120.00575 * 0.02562 * 27 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2835 3.3048 1.1833 8 1 3.9238 4.3055 1.3721 9 6 5.0521 2.6510 2.1385 10 7 5.7581 1.5946 1.8031 11 14 5.0818 3.2737 3.8994 12 1 4.2088 4.4692 4.0165 13 1 4.5885 2.2089 4.8094 14 1 6.4723 3.6383 4.2721 15 6 4.0672 3.3575 -1.1607 16 8 3.7214 2.8307 -2.1971 17 6 4.5925 4.7699 -1.1721 18 1 4.2704 5.2846 -0.2669 19 6 6.1213 4.7451 -1.2280 20 6 4.0573 5.4952 -2.3798 21 6 4.3427 5.0270 -3.6490 22 6 3.8483 5.6872 -4.7581 23 6 3.0761 6.8249 -4.5990 24 9 2.5967 7.4737 -5.6828 25 6 2.7947 7.2976 -3.3264 26 9 2.0408 8.4076 -3.1687 27 6 3.2866 6.6309 -2.2176 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 6.2943 1.1379 2.4701 34 1 6.5025 5.7658 -1.2002 35 1 6.5071 4.1897 -0.3732 36 1 6.4433 4.2619 -2.1505 37 1 4.9485 4.1417 -3.7738 38 1 4.0682 5.3180 -5.7489 39 1 3.0684 6.9985 -1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358574122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:22 Heat of formation + Delta-G solvation = -194.239737 kcal Electronic energy + Delta-G solvation = -28331.813426 eV Core-core repulsion = 23875.493553 eV Total energy + Delta-G solvation = -4456.319873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.51224 -49.59360 -41.64836 -40.90004 -39.47930 -37.46024 -36.60542 -34.79207 -33.52787 -31.88789 -30.62766 -29.73187 -27.93791 -26.74791 -25.30343 -24.24600 -23.20992 -21.96195 -20.96594 -19.18688 -18.80455 -18.71107 -18.43317 -17.91087 -17.52480 -17.35150 -17.28110 -16.98164 -16.57158 -16.03024 -16.00202 -15.67259 -15.45632 -15.32217 -14.93210 -14.70010 -14.42841 -14.32568 -13.94450 -13.69734 -13.40730 -13.17428 -13.13642 -12.94910 -12.87889 -12.74138 -12.62291 -12.43230 -12.30561 -12.03377 -11.80218 -11.77760 -11.53426 -11.06543 -10.44105 -9.99727 -9.62681 -9.52001 -8.34347 -6.16427 -0.10707 0.03393 1.27763 1.43382 1.52084 1.60222 1.63302 2.10504 2.31285 2.40122 2.74795 2.95693 3.05961 3.29050 3.53205 3.69731 4.01616 4.07855 4.16250 4.24832 4.29692 4.31094 4.35296 4.45711 4.54726 4.64303 4.74993 4.80935 4.83690 4.89190 5.03889 5.07022 5.09798 5.36269 5.41969 5.48516 5.54535 5.75585 5.90858 6.34870 6.83501 7.10592 7.45747 7.90944 8.70923 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.004359 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.111386 B = 6422.636614 C = 7604.792015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.533 6.533 5 C 0.130 3.870 6 N -0.434 5.434 7 C -0.352 4.352 8 H 0.090 0.910 9 C 0.019 3.981 10 N -0.883 5.883 11 Si 0.971 3.029 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.487 3.513 16 O -0.613 6.613 17 C -0.049 4.049 18 H 0.103 0.897 19 C -0.119 4.119 20 C -0.052 4.052 21 C -0.063 4.063 22 C -0.121 4.121 23 C 0.051 3.949 24 F -0.136 7.136 25 C 0.050 3.950 26 F -0.138 7.138 27 C -0.121 4.121 28 H 0.138 0.862 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.277 0.723 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 2.952 -4.274 5.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.422 6.422 5 C 0.004 3.996 6 N -0.152 5.152 7 C -0.479 4.479 8 H 0.107 0.893 9 C -0.186 4.186 10 N -0.519 5.519 11 Si 0.796 3.204 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.278 3.722 16 O -0.499 6.499 17 C -0.070 4.070 18 H 0.121 0.879 19 C -0.177 4.177 20 C -0.053 4.053 21 C -0.081 4.081 22 C -0.139 4.139 23 C 0.031 3.969 24 F -0.115 7.115 25 C 0.030 3.970 26 F -0.116 7.116 27 C -0.140 4.140 28 H 0.156 0.844 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.188 0.812 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.448 2.893 -4.714 5.717 hybrid contribution -0.668 0.376 0.869 1.159 sum -2.116 3.269 -3.844 5.472 Atomic orbital electron populations 1.23497 0.75374 1.05610 1.01969 1.86514 1.24801 1.33029 1.84180 1.25200 0.93563 0.81254 0.70855 1.90553 1.67619 1.37519 1.46543 1.20868 0.84636 0.88091 1.05984 1.43106 1.57220 1.08764 1.06143 1.19554 1.32319 1.02395 0.93639 0.89258 1.26074 0.92870 0.96452 1.03171 1.69938 1.25221 1.20878 1.35823 0.85199 0.78391 0.78645 0.78212 1.18905 1.20630 1.19796 1.20887 0.79255 0.89340 0.82728 1.90512 1.54583 1.71613 1.33239 1.19982 0.98640 0.91896 0.96521 0.87896 1.21545 0.90371 1.03301 1.02440 1.19610 0.96478 0.93927 0.95236 1.21111 0.98118 0.98255 0.90664 1.21271 0.97522 0.93244 1.01896 1.17792 1.01896 0.95618 0.81550 1.91484 1.86705 1.80634 1.52691 1.17657 0.98615 0.87438 0.93288 1.91481 1.73898 1.49882 1.96382 1.21082 0.98382 0.95865 0.98654 0.84426 0.92347 0.92784 0.88555 0.85285 0.91325 0.89672 0.92130 0.92375 0.83973 0.81185 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 1.99 16 2 O -0.37 -13.68 10.56 -51.40 -0.54 -14.22 16 3 C 0.45 19.87 7.99 71.24 0.57 20.44 16 4 O -0.53 -26.34 16.06 21.98 0.35 -25.98 16 5 C 0.13 5.90 5.43 85.63 0.46 6.37 16 6 N -0.43 -20.41 2.02 -639.61 -1.29 -21.70 16 7 C -0.35 -16.38 8.17 84.04 0.69 -15.69 16 8 H 0.09 4.09 6.77 -2.91 -0.02 4.07 16 9 C 0.02 0.87 4.97 84.93 0.42 1.30 16 10 N -0.88 -41.44 11.70 21.66 0.25 -41.19 16 11 Si 0.97 36.47 29.58 68.60 2.03 38.50 16 12 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 13 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 14 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 15 C 0.49 21.92 6.53 87.65 0.57 22.49 16 16 O -0.61 -29.59 14.30 -3.08 -0.04 -29.63 16 17 C -0.05 -1.79 2.24 -12.29 -0.03 -1.82 16 18 H 0.10 3.71 6.24 -2.39 -0.01 3.70 16 19 C -0.12 -3.77 9.01 71.98 0.65 -3.13 16 20 C -0.05 -1.71 4.64 -19.87 -0.09 -1.80 16 21 C -0.06 -1.95 7.86 22.27 0.17 -1.78 16 22 C -0.12 -3.26 10.02 22.31 0.22 -3.04 16 23 C 0.05 1.52 7.31 22.41 0.16 1.68 16 24 F -0.14 -4.00 17.18 44.97 0.77 -3.23 16 25 C 0.05 1.54 7.31 22.41 0.16 1.71 16 26 F -0.14 -4.30 17.18 44.97 0.77 -3.53 16 27 C -0.12 -3.73 9.65 22.31 0.22 -3.51 16 28 H 0.14 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.10 4.31 7.66 -2.39 -0.02 4.29 16 32 H 0.13 5.99 5.89 -2.39 -0.01 5.97 16 33 H 0.28 12.23 8.31 -92.71 -0.77 11.46 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.19 7.94 -2.39 -0.02 2.18 16 36 H 0.06 1.76 7.30 -2.39 -0.02 1.75 16 37 H 0.14 4.44 6.89 -2.91 -0.02 4.42 16 38 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.16 4.28 7.94 -2.91 -0.02 4.26 16 Total: -1.00 -59.45 347.16 8.79 -50.66 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.10 Total: 25.12 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 5.38 Total: 25.21 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -1.04 Total: -62.89 kcal Atomic # 8 Polarization: -69.60 SS G_CDS: -0.23 Total: -69.84 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 1.55 Total: -6.76 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -59.45 8.79 -50.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358574122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.580 kcal (2) G-P(sol) polarization free energy of solvation -59.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds