Wall clock time and date at job start Tue Mar 31 2020 14:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 120.00398 * 2 1 4 4 N 1.46499 * 109.47546 * 124.99732 * 3 2 1 5 5 C 1.46493 * 120.00301 * 262.25007 * 4 3 2 6 6 C 1.50697 * 109.47645 * 270.00070 * 5 4 3 7 7 H 1.08000 * 119.99599 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00336 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00006 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46989 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47278 * 119.99613 * 10 8 6 13 13 H 1.48496 * 109.47417 * 239.99824 * 10 8 6 14 14 C 1.34780 * 119.99727 * 82.24910 * 4 3 2 15 15 O 1.21737 * 119.99830 * 182.56305 * 14 4 3 16 16 C 1.46301 * 120.00145 * 2.56256 * 14 4 3 17 17 S 1.75811 * 125.49043 * 350.74910 * 16 14 4 18 18 C 1.70538 * 91.75815 * 180.02562 * 17 16 14 19 19 C 1.33399 * 111.33973 * 359.97438 * 18 17 16 20 20 C 1.37860 * 125.49208 * 170.78981 * 16 14 4 21 21 C 1.48152 * 123.58993 * 359.97438 * 20 16 14 22 22 C 1.39459 * 120.12978 * 309.72628 * 21 20 16 23 23 C 1.37988 * 119.86071 * 179.72341 * 22 21 20 24 24 C 1.38340 * 120.13455 * 0.54884 * 23 22 21 25 25 C 1.38342 * 120.27003 * 359.72509 * 24 23 22 26 26 C 1.37990 * 120.13184 * 359.97438 * 25 24 23 27 27 H 1.08005 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00504 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99739 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47094 * 4.99906 * 3 2 1 31 31 H 1.09001 * 109.47511 * 245.00061 * 3 2 1 32 32 H 1.09007 * 109.47122 * 30.00013 * 5 4 3 33 33 H 1.09000 * 109.47039 * 149.99588 * 5 4 3 34 34 H 0.97004 * 119.99967 * 180.02562 * 9 8 6 35 35 H 1.08005 * 124.33075 * 179.73734 * 18 17 16 36 36 H 1.08004 * 122.46554 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.06694 * 359.96906 * 22 21 20 38 38 H 1.08005 * 119.93007 * 180.27618 * 23 22 21 39 39 H 1.08002 * 119.86743 * 179.70483 * 24 23 22 40 40 H 1.08000 * 119.93508 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.06474 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6195 2.0162 2.3714 6 6 3.0576 3.4565 2.3023 7 1 3.5646 3.8250 1.4228 8 6 2.8122 4.3033 3.3622 9 7 2.1953 3.8544 4.4334 10 14 3.3559 6.0884 3.2769 11 1 4.0225 6.3410 1.9741 12 1 2.1705 6.9737 3.4056 13 1 4.3063 6.3699 4.3826 14 6 4.1940 0.7268 1.0315 15 8 4.9480 0.7088 1.9871 16 6 4.5907 0.0917 -0.2254 17 16 3.5419 -0.1711 -1.6117 18 6 4.8032 -0.9067 -2.4928 19 6 5.9321 -0.9462 -1.7833 20 6 5.8469 -0.3978 -0.5132 21 6 6.9848 -0.3428 0.4339 22 6 7.3167 0.8580 1.0605 23 6 8.3741 0.9016 1.9460 24 6 9.1114 -0.2401 2.2040 25 6 8.7906 -1.4330 1.5811 26 6 7.7316 -1.4906 0.6983 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.5379 1.9712 2.4990 33 1 3.1056 1.5287 3.2165 34 1 2.0223 4.4503 5.1790 35 1 4.7000 -1.2947 -3.4955 36 1 6.8449 -1.3752 -2.1696 37 1 6.7447 1.7511 0.8562 38 1 8.6292 1.8300 2.4354 39 1 9.9412 -0.2000 2.8942 40 1 9.3697 -2.3211 1.7868 41 1 7.4819 -2.4225 0.2130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359444365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:00 Heat of formation + Delta-G solvation = 57.178566 kcal Electronic energy + Delta-G solvation = -25188.467266 eV Core-core repulsion = 21740.032109 eV Total energy + Delta-G solvation = -3448.435157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.69987 -38.59846 -37.07611 -35.68072 -33.32818 -32.13440 -31.21765 -30.59547 -29.37722 -27.38608 -25.78777 -24.73430 -22.92801 -22.17163 -21.69627 -20.46777 -19.62941 -18.50086 -17.45102 -16.75236 -16.42426 -15.71164 -15.44036 -14.96280 -14.90983 -14.54833 -14.39170 -14.21686 -13.98259 -13.22017 -13.06279 -12.94857 -12.74237 -12.54233 -12.45103 -12.24174 -12.05763 -11.85790 -11.35868 -11.13136 -10.97053 -10.94932 -10.72541 -10.65986 -10.34802 -10.16692 -9.67404 -9.42906 -9.22548 -8.87788 -8.53312 -8.46894 -8.38640 -7.88374 -7.69965 -6.07538 -4.12722 0.64392 1.59421 1.68011 1.79323 2.11245 2.39343 2.66673 3.27544 3.35477 3.38983 3.77418 3.93937 4.17236 4.42044 4.86200 4.91126 5.12392 5.18706 5.24775 5.26703 5.30016 5.34156 5.40929 5.45649 5.52384 5.77712 5.86186 5.91738 5.98120 6.06003 6.23559 6.26913 6.36575 6.44117 6.70111 6.75596 6.81333 6.86041 6.95175 7.04010 7.31252 7.39961 7.46831 7.88504 8.18276 8.28358 8.84391 8.99999 9.52590 11.00484 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005572 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.125806 B = 5024.199128 C = 7231.473847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C 0.125 3.875 4 N -0.586 5.586 5 C 0.249 3.751 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.573 3.427 15 O -0.513 6.513 16 C -0.246 4.246 17 S 0.240 5.760 18 C -0.282 4.282 19 C -0.134 4.134 20 C -0.003 4.003 21 C -0.028 4.028 22 C -0.048 4.048 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.105 4.105 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 -10.481 -13.384 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.199 4.199 3 C -0.001 4.001 4 N -0.317 5.317 5 C 0.131 3.869 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.359 3.641 15 O -0.390 6.390 16 C -0.367 4.367 17 S 0.511 5.489 18 C -0.418 4.418 19 C -0.165 4.165 20 C -0.018 4.018 21 C -0.030 4.030 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.152 4.152 26 C -0.124 4.124 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.218 -10.113 -13.055 16.824 hybrid contribution 1.655 0.572 0.167 1.759 sum 4.873 -9.542 -12.888 16.760 Atomic orbital electron populations 1.23827 0.95493 1.02006 0.99598 1.23468 0.96684 0.98848 1.00889 1.20898 0.93397 0.96438 0.89377 1.48150 1.14251 1.52864 1.16430 1.19347 0.96074 0.91494 0.80035 1.21448 1.38287 0.94424 1.02471 0.92354 1.24914 0.95045 0.98906 0.95059 1.69944 1.41484 1.35825 1.05897 0.86467 0.78392 0.84543 0.78185 1.19766 1.20935 1.20833 1.16856 0.82404 0.79035 0.85821 1.90855 1.51022 1.59501 1.37651 1.25133 0.98258 1.12832 1.00428 1.83920 1.10182 1.51304 1.03494 1.25756 1.01227 1.08597 1.06250 1.19851 0.99354 1.03823 0.93456 1.18208 0.91981 0.97734 0.93857 1.18202 0.93666 0.94039 0.97079 1.21142 0.94405 0.97355 0.93787 1.21037 0.96072 0.98554 0.98343 1.21123 0.99765 0.93058 0.99605 1.20895 0.98180 0.97738 0.98355 1.21035 0.95477 0.97084 0.98778 0.88077 0.88419 0.87028 0.87873 0.90571 0.94748 0.93460 0.92722 0.82296 0.84664 0.86101 0.86154 0.86573 0.86484 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 29.02 0.42 -1.67 16 2 C -0.18 -2.51 7.92 -36.03 -0.29 -2.79 16 3 C 0.12 2.06 5.43 -5.20 -0.03 2.03 16 4 N -0.59 -12.51 2.46 -178.12 -0.44 -12.95 16 5 C 0.25 6.43 5.14 -5.20 -0.03 6.40 16 6 C -0.53 -14.65 9.39 -34.45 -0.32 -14.97 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.57 12.38 7.21 -13.02 -0.09 12.29 16 15 O -0.51 -12.82 12.81 5.16 0.07 -12.75 16 16 C -0.25 -4.30 6.21 -36.48 -0.23 -4.53 16 17 S 0.24 3.09 15.57 -107.50 -1.67 1.41 16 18 C -0.28 -3.29 10.88 29.04 0.32 -2.97 16 19 C -0.13 -1.77 9.85 -41.14 -0.41 -2.17 16 20 C 0.00 -0.05 5.44 -105.83 -0.58 -0.62 16 21 C -0.03 -0.48 4.94 -104.92 -0.52 -0.99 16 22 C -0.05 -0.89 7.28 -39.22 -0.29 -1.17 16 23 C -0.12 -1.99 10.03 -39.64 -0.40 -2.39 16 24 C -0.12 -1.67 10.04 -39.51 -0.40 -2.06 16 25 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 26 C -0.11 -1.55 9.64 -39.22 -0.38 -1.93 16 27 H 0.10 1.18 7.84 -52.48 -0.41 0.77 16 28 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.11 1.55 6.88 -52.49 -0.36 1.19 16 30 H 0.10 1.70 7.67 -51.93 -0.40 1.30 16 31 H 0.08 1.14 4.51 -22.48 -0.10 1.04 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.12 2.42 7.39 -52.49 -0.39 2.03 16 38 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -32.29 356.49 -9.63 -41.92 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.97 Total: 3.99 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.71 Total: -18.10 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.30 Total: -38.41 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.67 Total: 1.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.29 -9.63 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359444365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.102 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds