Wall clock time and date at job start Tue Mar 31 2020 14:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 120.00398 * 2 1 4 4 N 1.46499 * 109.47546 * 124.99732 * 3 2 1 5 5 C 1.46493 * 120.00301 * 262.25007 * 4 3 2 6 6 C 1.50697 * 109.47645 * 270.00070 * 5 4 3 7 7 H 1.08000 * 119.99599 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00336 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00006 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46989 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47278 * 119.99613 * 10 8 6 13 13 H 1.48496 * 109.47417 * 239.99824 * 10 8 6 14 14 C 1.34780 * 119.99727 * 82.24910 * 4 3 2 15 15 O 1.21737 * 119.99830 * 182.56305 * 14 4 3 16 16 C 1.46301 * 120.00145 * 2.56256 * 14 4 3 17 17 S 1.75811 * 125.49043 * 350.74910 * 16 14 4 18 18 C 1.70538 * 91.75815 * 180.02562 * 17 16 14 19 19 C 1.33399 * 111.33973 * 359.97438 * 18 17 16 20 20 C 1.37860 * 125.49208 * 170.78981 * 16 14 4 21 21 C 1.48152 * 123.58993 * 359.97438 * 20 16 14 22 22 C 1.39459 * 120.12978 * 309.72628 * 21 20 16 23 23 C 1.37988 * 119.86071 * 179.72341 * 22 21 20 24 24 C 1.38340 * 120.13455 * 0.54884 * 23 22 21 25 25 C 1.38342 * 120.27003 * 359.72509 * 24 23 22 26 26 C 1.37990 * 120.13184 * 359.97438 * 25 24 23 27 27 H 1.08005 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00504 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99739 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47094 * 4.99906 * 3 2 1 31 31 H 1.09001 * 109.47511 * 245.00061 * 3 2 1 32 32 H 1.09007 * 109.47122 * 30.00013 * 5 4 3 33 33 H 1.09000 * 109.47039 * 149.99588 * 5 4 3 34 34 H 0.97004 * 119.99967 * 180.02562 * 9 8 6 35 35 H 1.08005 * 124.33075 * 179.73734 * 18 17 16 36 36 H 1.08004 * 122.46554 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.06694 * 359.96906 * 22 21 20 38 38 H 1.08005 * 119.93007 * 180.27618 * 23 22 21 39 39 H 1.08002 * 119.86743 * 179.70483 * 24 23 22 40 40 H 1.08000 * 119.93508 * 180.02562 * 25 24 23 41 41 H 1.07998 * 120.06474 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6195 2.0162 2.3714 6 6 3.0576 3.4565 2.3023 7 1 3.5646 3.8250 1.4228 8 6 2.8122 4.3033 3.3622 9 7 2.1953 3.8544 4.4334 10 14 3.3559 6.0884 3.2769 11 1 4.0225 6.3410 1.9741 12 1 2.1705 6.9737 3.4056 13 1 4.3063 6.3699 4.3826 14 6 4.1940 0.7268 1.0315 15 8 4.9480 0.7088 1.9871 16 6 4.5907 0.0917 -0.2254 17 16 3.5419 -0.1711 -1.6117 18 6 4.8032 -0.9067 -2.4928 19 6 5.9321 -0.9462 -1.7833 20 6 5.8469 -0.3978 -0.5132 21 6 6.9848 -0.3428 0.4339 22 6 7.3167 0.8580 1.0605 23 6 8.3741 0.9016 1.9460 24 6 9.1114 -0.2401 2.2040 25 6 8.7906 -1.4330 1.5811 26 6 7.7316 -1.4906 0.6983 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.5379 1.9712 2.4990 33 1 3.1056 1.5287 3.2165 34 1 2.0223 4.4503 5.1790 35 1 4.7000 -1.2947 -3.4955 36 1 6.8449 -1.3752 -2.1696 37 1 6.7447 1.7511 0.8562 38 1 8.6292 1.8300 2.4354 39 1 9.9412 -0.2000 2.8942 40 1 9.3697 -2.3211 1.7868 41 1 7.4819 -2.4225 0.2130 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359444365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:00 Heat of formation + Delta-G solvation = 39.659743 kcal Electronic energy + Delta-G solvation = -25189.226939 eV Core-core repulsion = 21740.032109 eV Total energy + Delta-G solvation = -3449.194830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10445 -39.96968 -38.22152 -37.19344 -35.22738 -33.75653 -32.35794 -31.78982 -30.88561 -29.06179 -27.18000 -26.18921 -24.65714 -23.37836 -22.83238 -21.87189 -20.85943 -19.67999 -18.93215 -18.62898 -17.89966 -17.08939 -16.76503 -16.56810 -16.35222 -15.80919 -15.68851 -15.63050 -15.31705 -14.50487 -14.41647 -14.30405 -14.14810 -13.95339 -13.76900 -13.63255 -13.47746 -13.20880 -13.01830 -12.93346 -12.65419 -12.30733 -12.25270 -12.09843 -11.90918 -11.73126 -11.35563 -10.84225 -10.67861 -10.51662 -10.08133 -9.77870 -9.56381 -9.47619 -8.94956 -8.25024 -6.39869 -0.55823 0.44796 0.54753 0.58703 1.05260 1.30528 1.33748 1.36087 1.47546 1.53373 2.19351 2.37861 2.43274 2.96508 3.04676 3.61095 3.77818 3.94213 4.06257 4.12066 4.13962 4.25445 4.28210 4.36490 4.38280 4.63706 4.70201 4.72115 4.89802 4.95901 5.00693 5.11862 5.15809 5.18563 5.27155 5.34113 5.47050 5.59660 5.64829 5.65310 5.71954 5.75109 5.86642 6.02184 6.14374 6.61351 6.69255 7.23231 7.38743 8.82360 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005572 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.125806 B = 5024.199128 C = 7231.473847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.200 4.200 3 C 0.121 3.879 4 N -0.595 5.595 5 C 0.269 3.731 6 C -0.541 4.541 7 H 0.050 0.950 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.281 1.281 14 C 0.566 3.434 15 O -0.565 6.565 16 C -0.301 4.301 17 S 0.291 5.709 18 C -0.254 4.254 19 C -0.148 4.148 20 C -0.001 4.001 21 C -0.049 4.049 22 C -0.078 4.078 23 C -0.143 4.143 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.108 4.108 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.026 0.974 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.202 0.798 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -12.149 -16.136 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.220 4.220 3 C -0.003 4.003 4 N -0.325 5.325 5 C 0.148 3.852 6 C -0.580 4.580 7 H 0.068 0.932 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.191 1.191 13 H -0.207 1.207 14 C 0.355 3.645 15 O -0.447 6.447 16 C -0.421 4.421 17 S 0.563 5.437 18 C -0.390 4.390 19 C -0.177 4.177 20 C -0.018 4.018 21 C -0.051 4.051 22 C -0.097 4.097 23 C -0.161 4.161 24 C -0.136 4.136 25 C -0.145 4.145 26 C -0.126 4.126 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.219 0.781 36 H 0.179 0.821 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.420 -11.787 -15.854 20.049 hybrid contribution 1.560 1.006 0.971 2.095 sum 4.980 -10.781 -14.883 19.040 Atomic orbital electron populations 1.24113 0.94786 1.03524 0.96027 1.23264 0.97245 0.97469 1.04057 1.21124 0.92861 0.98004 0.88273 1.48089 1.15492 1.52626 1.16308 1.18737 0.94634 0.90739 0.81075 1.21663 1.38334 0.95536 1.02454 0.93152 1.25795 0.94883 1.03486 0.94526 1.70056 1.42345 1.37549 1.06579 0.85413 0.78399 0.79149 0.78137 1.19336 1.19125 1.20711 1.17448 0.81609 0.78444 0.86995 1.90798 1.52323 1.61530 1.40008 1.24775 1.00523 1.15885 1.00959 1.83533 1.08999 1.50494 1.00648 1.26242 0.99741 1.05747 1.07288 1.19994 1.01093 1.04488 0.92126 1.18552 0.91232 0.96933 0.95062 1.18479 0.94577 0.94296 0.97703 1.20999 0.95532 0.97089 0.96055 1.21216 0.96429 0.99938 0.98485 1.21481 0.99962 0.92386 0.99722 1.21381 0.97636 0.98688 0.96837 1.21392 0.95219 0.97094 0.98886 0.87616 0.85740 0.86744 0.88397 0.89034 0.95579 0.98260 0.92332 0.78078 0.82119 0.89876 0.86166 0.83538 0.82616 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.20 -5.48 7.92 25.65 0.20 -5.28 16 3 C 0.12 4.10 5.43 85.63 0.46 4.56 16 4 N -0.60 -27.12 2.46 -835.66 -2.06 -29.18 16 5 C 0.27 14.95 5.14 85.63 0.44 15.39 16 6 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.72 5.46 84.65 0.46 1.18 16 9 N -0.93 -56.42 13.29 21.44 0.28 -56.14 16 10 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 C 0.57 26.32 7.21 86.34 0.62 26.94 16 15 O -0.57 -31.02 12.81 -4.47 -0.06 -31.08 16 16 C -0.30 -10.84 6.21 24.28 0.15 -10.69 16 17 S 0.29 6.95 15.57 -56.49 -0.88 6.07 16 18 C -0.25 -4.90 10.88 66.72 0.73 -4.18 16 19 C -0.15 -3.49 9.85 21.26 0.21 -3.28 16 20 C 0.00 -0.04 5.44 -20.65 -0.11 -0.15 16 21 C -0.05 -1.71 4.94 -20.05 -0.10 -1.81 16 22 C -0.08 -3.10 7.28 22.50 0.16 -2.94 16 23 C -0.14 -4.95 10.03 22.23 0.22 -4.73 16 24 C -0.12 -3.26 10.04 22.32 0.22 -3.04 16 25 C -0.13 -3.21 10.03 22.24 0.22 -2.99 16 26 C -0.11 -3.04 9.64 22.51 0.22 -2.82 16 27 H 0.11 2.28 7.84 -2.91 -0.02 2.26 16 28 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.11 3.08 6.88 -2.91 -0.02 3.06 16 30 H 0.10 3.32 7.67 -2.39 -0.02 3.30 16 31 H 0.09 2.74 4.51 -21.11 -0.10 2.64 16 32 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 33 H 0.00 -0.05 7.39 -2.39 -0.02 -0.06 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.08 3.80 7.39 -2.91 -0.02 3.78 16 38 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -77.40 356.49 5.59 -71.81 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.95 Total: 18.69 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 5.33 Total: -27.69 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.77 Total: -85.31 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.06 Total: -31.08 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -0.88 Total: 6.07 kcal Total: -77.40 5.59 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359444365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.471 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds