Wall clock time and date at job start Tue Mar 31 2020 15:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21271 * 120.00572 * 179.97438 * 13 2 1 15 15 C 1.50708 * 119.99349 * 0.02562 * 13 2 1 16 16 S 1.81402 * 109.46660 * 179.97438 * 15 13 2 17 17 C 1.81402 * 102.99622 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47176 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99605 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99679 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46704 * 90.00182 * 22 20 18 24 24 H 1.48498 * 109.46622 * 209.99769 * 22 20 18 25 25 H 1.48492 * 109.47231 * 330.00307 * 22 20 18 26 26 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 27 27 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 28 28 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 29 29 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 30 30 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 31 31 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 32 32 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 33 33 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 34 34 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 35 35 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47000 * 299.99587 * 15 13 2 38 38 H 1.08996 * 109.47033 * 59.99696 * 15 13 2 39 39 H 1.09003 * 109.47073 * 299.99387 * 17 16 15 40 40 H 1.09002 * 109.47405 * 60.00078 * 17 16 15 41 41 H 0.97004 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 16 2.5642 -3.8510 0.0005 17 6 1.4859 -5.3098 -0.0003 18 6 2.3299 -6.5583 0.0003 19 1 3.4071 -6.4819 0.0006 20 6 1.7267 -7.7982 0.0004 21 7 0.4149 -7.8912 0.0005 22 14 2.7729 -9.3458 0.0003 23 1 3.0501 -9.7557 1.4005 24 1 2.0455 -10.4348 -0.6996 25 1 4.0545 -9.0768 -0.6997 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6085 2.0284 -0.5139 30 1 3.1500 1.1384 -0.5138 31 1 1.5061 1.7551 1.9814 32 1 2.9180 2.6961 1.4438 33 1 2.4950 2.8198 3.4909 34 1 3.0906 3.2628 5.8376 35 1 4.5826 1.7218 7.0436 36 1 5.4759 -0.2721 5.9103 37 1 0.7584 -2.5298 0.8903 38 1 0.7590 -2.5302 -0.8896 39 1 0.8565 -5.2968 0.8896 40 1 0.8570 -5.2963 -0.8905 41 1 -0.0095 -8.7635 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:11 Heat of formation + Delta-G solvation = -85.656365 kcal Electronic energy + Delta-G solvation = -24977.087271 eV Core-core repulsion = 21091.689102 eV Total energy + Delta-G solvation = -3885.398169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.63887 -40.31554 -39.44932 -37.59939 -35.52250 -33.08120 -31.70396 -30.89428 -29.84075 -28.71523 -28.33608 -26.71536 -24.21271 -23.01092 -22.64186 -22.05721 -19.30696 -18.67687 -17.23747 -17.04648 -16.74497 -16.61286 -16.30549 -15.83088 -15.68036 -15.19980 -15.10887 -14.76890 -14.53621 -14.24354 -14.08726 -13.49930 -13.24714 -12.92890 -12.84698 -12.68091 -12.52798 -12.41172 -12.31769 -12.21318 -12.04224 -11.83009 -11.67724 -11.30577 -11.14576 -10.82576 -10.65495 -9.95024 -9.60789 -9.46194 -9.15560 -8.74481 -8.66052 -8.55587 -8.33110 -6.53827 -6.14117 -4.17141 0.91898 1.06787 2.40447 2.82498 2.94453 3.15357 3.31496 3.36520 3.37605 3.43504 3.92963 4.13465 4.41446 4.42387 4.58097 4.63897 4.70971 4.75745 4.84799 4.94853 4.99538 5.03149 5.07012 5.23345 5.23939 5.34103 5.47851 5.51854 5.62460 5.68895 5.76508 5.83660 5.96088 6.13469 6.38156 6.49473 7.14663 7.15505 7.18021 7.32995 7.81824 8.08241 8.40204 8.85202 9.45539 10.97582 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003014 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.463789 B = 9287.124167 C =10739.728396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.626 5.626 3 C 0.120 3.880 4 C 0.040 3.960 5 O -0.282 6.282 6 C 0.100 3.900 7 C -0.189 4.189 8 C -0.095 4.095 9 C -0.134 4.134 10 C -0.119 4.119 11 C 0.074 3.926 12 F -0.121 7.121 13 C 0.533 3.467 14 O -0.491 6.491 15 C -0.127 4.127 16 S -0.233 6.233 17 C 0.073 3.927 18 C -0.507 4.507 19 H 0.068 0.932 20 C 0.065 3.935 21 N -0.895 5.895 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.270 1.270 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 26.210 7.554 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.363 5.363 3 C -0.003 4.003 4 C -0.037 4.037 5 O -0.195 6.195 6 C 0.053 3.947 7 C -0.207 4.207 8 C -0.113 4.113 9 C -0.152 4.152 10 C -0.138 4.138 11 C 0.054 3.946 12 F -0.100 7.100 13 C 0.320 3.680 14 O -0.363 6.363 15 C -0.278 4.278 16 S -0.007 6.007 17 C -0.074 4.074 18 C -0.547 4.547 19 H 0.086 0.914 20 C -0.139 4.139 21 N -0.534 5.534 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.195 1.195 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.875 25.917 7.370 26.959 hybrid contribution -1.323 -0.825 0.028 1.559 sum -0.449 25.092 7.398 26.164 Atomic orbital electron populations 1.21809 0.79488 1.03255 1.01983 1.47758 1.06726 1.05435 1.76350 1.21453 0.99171 0.85957 0.93757 1.23390 0.93282 0.92232 0.94791 1.86415 1.63294 1.48853 1.20928 1.19154 0.95885 0.94394 0.85284 1.21131 1.04821 0.98063 0.96725 1.20967 0.97311 0.99366 0.93654 1.20897 0.99239 0.94654 1.00447 1.21087 1.01302 0.99135 0.92248 1.17139 0.99514 0.86387 0.91513 1.91611 1.85710 1.50345 1.82301 1.19966 0.87970 0.84221 0.75857 1.90749 1.13276 1.86336 1.45914 1.23384 1.02799 0.96046 1.05542 1.87301 1.16106 0.99406 1.97933 1.21154 0.95695 0.90627 0.99901 1.20664 0.93400 0.88808 1.51823 0.91394 1.24953 0.95162 0.99053 0.94707 1.69955 1.08525 1.24830 1.50062 0.86351 0.80256 0.81719 0.78364 1.20343 1.21032 1.19469 0.92364 0.90656 0.91361 0.88282 0.88519 0.91844 0.91103 0.84834 0.85313 0.85025 0.84064 0.88463 0.88385 0.94768 0.94743 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.26 16 2 N -0.63 -7.59 2.86 -181.57 -0.52 -8.11 16 3 C 0.12 1.15 5.86 -4.04 -0.02 1.13 16 4 C 0.04 0.37 5.08 37.16 0.19 0.56 16 5 O -0.28 -4.12 8.79 -27.34 -0.24 -4.36 16 6 C 0.10 1.33 6.69 -39.18 -0.26 1.06 16 7 C -0.19 -1.80 9.04 -39.45 -0.36 -2.15 16 8 C -0.09 -0.77 10.04 -39.59 -0.40 -1.16 16 9 C -0.13 -1.15 10.04 -39.57 -0.40 -1.54 16 10 C -0.12 -1.30 10.02 -39.54 -0.40 -1.70 16 11 C 0.07 1.08 7.31 -39.30 -0.29 0.79 16 12 F -0.12 -2.21 17.11 2.25 0.04 -2.17 16 13 C 0.53 9.24 7.32 -10.98 -0.08 9.16 16 14 O -0.49 -10.53 14.66 -2.17 -0.03 -10.56 16 15 C -0.13 -2.29 4.98 36.01 0.18 -2.11 16 16 S -0.23 -5.62 20.79 -107.50 -2.24 -7.85 16 17 C 0.07 1.98 5.70 36.01 0.21 2.18 16 18 C -0.51 -14.88 9.13 -34.44 -0.31 -15.20 16 19 H 0.07 2.02 7.71 -52.49 -0.40 1.61 16 20 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 21 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 22 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.66 6.44 -51.93 -0.33 0.33 16 28 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 29 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.10 1.14 7.42 -51.92 -0.39 0.76 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 32 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.10 1.61 7.40 -51.93 -0.38 1.23 16 38 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 39 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -36.78 367.02 -8.73 -45.51 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.57 Total: -3.28 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.43 Total: -5.96 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.22 Total: -33.86 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.27 Total: -14.92 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -2.24 Total: -7.85 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.78 -8.73 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.143 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds