Wall clock time and date at job start Tue Mar 31 2020 15:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21271 * 120.00572 * 179.97438 * 13 2 1 15 15 C 1.50708 * 119.99349 * 0.02562 * 13 2 1 16 16 S 1.81402 * 109.46660 * 179.97438 * 15 13 2 17 17 C 1.81402 * 102.99622 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47176 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99605 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99969 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99679 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46704 * 90.00182 * 22 20 18 24 24 H 1.48498 * 109.46622 * 209.99769 * 22 20 18 25 25 H 1.48492 * 109.47231 * 330.00307 * 22 20 18 26 26 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 27 27 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 28 28 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 29 29 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 30 30 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 31 31 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 32 32 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 33 33 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 34 34 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 35 35 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 36 36 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47000 * 299.99587 * 15 13 2 38 38 H 1.08996 * 109.47033 * 59.99696 * 15 13 2 39 39 H 1.09003 * 109.47073 * 299.99387 * 17 16 15 40 40 H 1.09002 * 109.47405 * 60.00078 * 17 16 15 41 41 H 0.97004 * 120.00038 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 16 2.5642 -3.8510 0.0005 17 6 1.4859 -5.3098 -0.0003 18 6 2.3299 -6.5583 0.0003 19 1 3.4071 -6.4819 0.0006 20 6 1.7267 -7.7982 0.0004 21 7 0.4149 -7.8912 0.0005 22 14 2.7729 -9.3458 0.0003 23 1 3.0501 -9.7557 1.4005 24 1 2.0455 -10.4348 -0.6996 25 1 4.0545 -9.0768 -0.6997 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6085 2.0284 -0.5139 30 1 3.1500 1.1384 -0.5138 31 1 1.5061 1.7551 1.9814 32 1 2.9180 2.6961 1.4438 33 1 2.4950 2.8198 3.4909 34 1 3.0906 3.2628 5.8376 35 1 4.5826 1.7218 7.0436 36 1 5.4759 -0.2721 5.9103 37 1 0.7584 -2.5298 0.8903 38 1 0.7590 -2.5302 -0.8896 39 1 0.8565 -5.2968 0.8896 40 1 0.8570 -5.2963 -0.8905 41 1 -0.0095 -8.7635 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:10 Heat of formation + Delta-G solvation = -109.064254 kcal Electronic energy + Delta-G solvation = -24978.102313 eV Core-core repulsion = 21091.689102 eV Total energy + Delta-G solvation = -3886.413211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.79824 -41.22999 -40.54915 -38.43562 -36.62932 -35.30730 -32.67064 -31.65690 -30.89509 -30.61112 -29.64057 -27.52801 -25.36066 -24.89613 -23.45783 -22.90062 -20.42320 -19.51496 -18.68648 -18.22819 -18.10361 -17.64740 -17.52380 -17.22121 -16.84103 -16.65923 -16.24345 -15.95921 -15.73373 -15.35590 -15.15412 -14.65760 -14.54811 -14.47355 -14.20584 -14.05349 -13.80752 -13.51774 -13.45097 -13.34576 -13.03372 -12.84882 -12.74804 -12.58398 -12.51703 -12.08569 -12.01505 -11.87611 -11.60997 -10.92162 -10.75970 -10.63083 -9.94052 -9.72993 -9.18390 -8.51237 -8.35331 -6.47706 0.13099 0.28964 0.75303 1.38150 1.39843 1.52542 1.57213 1.97954 2.00681 2.21051 2.36057 2.61937 2.99067 3.31324 3.54162 3.70854 3.86984 3.99822 4.04609 4.10230 4.15933 4.19519 4.27515 4.32437 4.36786 4.40760 4.61253 4.68735 4.84643 4.90494 4.92920 4.93594 5.00463 5.11147 5.26281 5.41577 5.52624 5.55685 5.75421 5.87897 6.22744 6.40986 6.58447 7.15060 7.19766 8.76969 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003014 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.463789 B = 9287.124167 C =10739.728396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.613 5.613 3 C 0.115 3.885 4 C 0.032 3.968 5 O -0.326 6.326 6 C 0.078 3.922 7 C -0.183 4.183 8 C -0.082 4.082 9 C -0.129 4.129 10 C -0.124 4.124 11 C 0.014 3.986 12 F -0.161 7.161 13 C 0.529 3.471 14 O -0.546 6.546 15 C -0.109 4.109 16 S -0.281 6.281 17 C 0.088 3.912 18 C -0.539 4.539 19 H 0.055 0.945 20 C 0.018 3.982 21 N -0.922 5.922 22 Si 0.975 3.025 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.269 1.269 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 29.141 8.666 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.347 5.347 3 C -0.007 4.007 4 C -0.043 4.043 5 O -0.240 6.240 6 C 0.032 3.968 7 C -0.201 4.201 8 C -0.100 4.100 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.006 4.006 12 F -0.140 7.140 13 C 0.315 3.685 14 O -0.422 6.422 15 C -0.260 4.260 16 S -0.055 6.055 17 C -0.059 4.059 18 C -0.578 4.578 19 H 0.074 0.926 20 C -0.183 4.183 21 N -0.561 5.561 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.169 0.831 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.036 0.964 40 H 0.040 0.960 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.981 28.895 8.484 30.131 hybrid contribution -0.871 -1.502 -0.269 1.757 sum -1.852 27.393 8.216 28.658 Atomic orbital electron populations 1.22153 0.76635 1.04876 1.03702 1.47783 1.08470 1.04607 1.73876 1.21804 0.98599 0.85654 0.94627 1.23687 0.93892 0.92656 0.94057 1.86378 1.64635 1.51092 1.21868 1.19449 0.96511 0.95561 0.85304 1.21513 1.04377 0.96843 0.97391 1.21523 0.95595 0.99868 0.92981 1.21354 0.98265 0.93280 1.01826 1.21335 1.01497 1.00375 0.91091 1.17865 1.02465 0.86833 0.93405 1.91491 1.86681 1.52556 1.83269 1.19848 0.87321 0.85352 0.75984 1.90736 1.15387 1.87132 1.48957 1.23399 1.01262 0.93926 1.07436 1.87378 1.18688 1.01387 1.98065 1.20807 0.95261 0.91632 0.98247 1.20946 0.93162 0.90532 1.53162 0.92648 1.25858 0.96524 1.02230 0.93662 1.70035 1.09958 1.26121 1.49937 0.85299 0.78470 0.77584 0.78835 1.19388 1.19431 1.19379 0.90531 0.91379 0.87521 0.83052 0.91512 0.89631 0.88184 0.81711 0.81162 0.81645 0.83441 0.86874 0.86044 0.96430 0.96036 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.24 127.77 1.31 2.20 16 2 N -0.61 -13.86 2.86 -846.75 -2.42 -16.28 16 3 C 0.12 1.98 5.86 86.38 0.51 2.49 16 4 C 0.03 0.53 5.08 71.98 0.37 0.90 16 5 O -0.33 -9.71 8.79 -85.66 -0.75 -10.47 16 6 C 0.08 2.10 6.69 22.53 0.15 2.25 16 7 C -0.18 -2.97 9.04 22.36 0.20 -2.77 16 8 C -0.08 -1.00 10.04 22.26 0.22 -0.78 16 9 C -0.13 -1.88 10.04 22.28 0.22 -1.65 16 10 C -0.12 -2.77 10.02 22.29 0.22 -2.55 16 11 C 0.01 0.43 7.31 22.45 0.16 0.60 16 12 F -0.16 -6.61 17.11 44.97 0.77 -5.84 16 13 C 0.53 18.63 7.32 87.66 0.64 19.28 16 14 O -0.55 -24.78 14.66 4.40 0.06 -24.71 16 15 C -0.11 -4.00 4.98 71.24 0.35 -3.65 16 16 S -0.28 -14.25 20.79 -56.49 -1.17 -15.42 16 17 C 0.09 4.95 5.70 71.24 0.41 5.36 16 18 C -0.54 -32.81 9.13 25.60 0.23 -32.58 16 19 H 0.06 3.44 7.71 -2.91 -0.02 3.41 16 20 C 0.02 1.07 5.46 84.65 0.46 1.53 16 21 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 22 Si 0.98 45.65 29.54 68.60 2.03 47.67 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 1.02 6.44 -2.39 -0.02 1.01 16 28 H 0.11 0.64 8.07 -2.39 -0.02 0.62 16 29 H 0.15 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.07 1.59 7.42 -2.38 -0.02 1.57 16 31 H 0.09 0.99 7.66 -2.39 -0.02 0.98 16 32 H 0.10 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.17 1.51 6.30 -2.91 -0.02 1.49 16 34 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.11 3.76 7.40 -2.39 -0.02 3.75 16 38 H 0.12 3.84 8.11 -2.39 -0.02 3.82 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -88.42 367.02 5.30 -83.12 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.04 Total: 6.23 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.47 Total: -9.38 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -2.13 Total: -71.20 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.69 Total: -35.18 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.77 Total: -5.84 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: -14.25 SS G_CDS: -1.17 Total: -15.42 kcal Total: -88.42 5.30 -83.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.947 kcal (2) G-P(sol) polarization free energy of solvation -88.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds