Wall clock time and date at job start Tue Mar 31 2020 15:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46996 * 270.02430 * 7 6 5 9 9 C 1.46507 * 119.99991 * 270.00067 * 8 7 6 10 10 C 1.34777 * 120.00455 * 90.00158 * 8 7 6 11 11 O 1.21283 * 119.99452 * 359.97438 * 10 8 7 12 12 C 1.50690 * 120.00419 * 180.02562 * 10 8 7 13 13 S 1.81404 * 109.47469 * 179.97438 * 12 10 8 14 14 C 1.81400 * 103.00084 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46705 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00430 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99742 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46961 * 60.00905 * 19 17 15 21 21 H 1.48498 * 109.46791 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47513 * 300.00249 * 19 17 15 23 23 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 24 24 C 1.38326 * 120.03416 * 359.95854 * 23 6 5 25 25 F 1.35098 * 120.05006 * 179.97438 * 24 23 6 26 26 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 27 27 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 28 28 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 30 30 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 32 32 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 33 33 H 1.08997 * 109.47286 * 89.99939 * 9 8 7 34 34 H 1.08999 * 109.47254 * 210.00225 * 9 8 7 35 35 H 1.08998 * 109.46868 * 329.99801 * 9 8 7 36 36 H 1.09004 * 109.46898 * 299.99397 * 12 10 8 37 37 H 1.08997 * 109.47687 * 59.99495 * 12 10 8 38 38 H 1.09005 * 109.47024 * 299.99495 * 14 13 12 39 39 H 1.08990 * 109.47091 * 60.00029 * 14 13 12 40 40 H 0.96991 * 119.99888 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.98065 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2068 5.4502 -1.4000 9 6 5.4487 5.0900 -2.0888 10 6 3.2682 6.1764 -2.0389 11 8 2.2400 6.4742 -1.4688 12 6 3.4959 6.6174 -3.4617 13 16 2.0624 7.5689 -4.0367 14 6 2.5174 8.0044 -5.7379 15 6 1.4085 8.8105 -6.3636 16 1 0.5192 9.0384 -5.7947 17 6 1.5297 9.2580 -7.6622 18 7 2.6128 8.9809 -8.3548 19 14 0.1548 10.2566 -8.4380 20 1 -0.0616 11.4966 -7.6501 21 1 0.5273 10.6133 -9.8306 22 1 -1.0942 9.4536 -8.4504 23 6 4.0580 2.5196 -0.0058 24 6 3.4334 1.2855 -0.0001 25 9 4.1713 0.1538 0.0047 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2138 2.3201 -0.0063 30 1 1.3344 4.5114 -0.0166 31 1 3.3564 5.7503 0.4934 32 1 4.9431 4.9440 0.4974 33 1 5.3179 4.1354 -2.5984 34 1 5.6960 5.8607 -2.8188 35 1 6.2562 5.0060 -1.3616 36 1 4.3891 7.2403 -3.5106 37 1 3.6286 5.7416 -4.0969 38 1 3.4347 8.5931 -5.7292 39 1 2.6751 7.0941 -6.3161 40 1 2.6978 9.2953 -9.2683 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:23 Heat of formation + Delta-G solvation = -89.796819 kcal Electronic energy + Delta-G solvation = -24528.887156 eV Core-core repulsion = 20643.309443 eV Total energy + Delta-G solvation = -3885.577713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.98300 -40.48383 -39.68068 -37.87135 -35.49601 -33.13943 -31.87937 -31.00012 -29.60178 -28.50233 -28.08466 -26.98446 -25.37236 -23.08167 -23.02340 -21.87260 -19.44061 -18.58623 -17.34564 -17.17240 -16.81440 -16.63417 -16.43064 -16.07960 -15.80435 -15.30604 -15.09415 -15.01864 -14.55392 -14.41388 -14.31460 -13.53707 -13.51331 -13.21120 -12.76415 -12.59489 -12.55462 -12.49747 -12.48104 -12.29695 -11.99244 -11.87463 -11.79057 -11.40651 -11.38459 -10.84628 -10.73783 -10.02838 -9.79189 -9.57587 -9.20809 -8.86684 -8.76826 -8.60595 -8.40988 -6.64604 -6.19400 -4.23163 0.85341 0.89965 2.32746 2.70707 2.80835 2.99969 3.29260 3.31898 3.36709 3.44205 3.83328 3.94059 4.33507 4.36272 4.47165 4.56723 4.73118 4.80993 4.90149 4.93344 4.95454 5.08424 5.14960 5.17951 5.18107 5.22539 5.42016 5.50183 5.51916 5.59692 5.62670 5.79176 5.93200 6.22790 6.32246 6.35417 6.94890 7.08045 7.08995 7.22474 7.75656 8.01721 8.21434 8.78730 9.39820 10.92150 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002428 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.075930 B =11529.713336 C =12272.166282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.097 3.903 4 C -0.183 4.183 5 C -0.060 4.060 6 C -0.116 4.116 7 C 0.161 3.839 8 N -0.618 5.618 9 C 0.076 3.924 10 C 0.536 3.464 11 O -0.511 6.511 12 C -0.129 4.129 13 S -0.237 6.237 14 C 0.075 3.925 15 C -0.511 4.511 16 H 0.067 0.933 17 C 0.066 3.934 18 N -0.894 5.894 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.102 4.102 24 C 0.062 3.938 25 F -0.135 7.135 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -15.683 18.639 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.051 3.949 4 C -0.201 4.201 5 C -0.079 4.079 6 C -0.118 4.118 7 C 0.039 3.961 8 N -0.353 5.353 9 C -0.067 4.067 10 C 0.323 3.677 11 O -0.385 6.385 12 C -0.279 4.279 13 S -0.012 6.012 14 C -0.072 4.072 15 C -0.550 4.550 16 H 0.085 0.915 17 C -0.138 4.138 18 N -0.532 5.532 19 Si 0.734 3.266 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.122 4.122 24 C 0.042 3.958 25 F -0.113 7.113 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.315 -15.476 19.325 24.979 hybrid contribution 0.554 -0.067 -1.376 1.485 sum 3.869 -15.544 17.949 24.057 Atomic orbital electron populations 1.23140 0.77726 1.04301 1.01779 1.86117 1.21907 1.25858 1.88631 1.19060 0.90865 0.85668 0.99302 1.21207 1.00522 0.91375 1.07030 1.21162 0.94146 0.97802 0.94799 1.20026 0.93801 0.95104 1.02875 1.20278 1.00752 0.92043 0.83067 1.47864 1.19191 1.54484 1.13742 1.21864 0.85511 1.01335 0.98009 1.20034 0.82927 0.77112 0.87600 1.90690 1.26046 1.54663 1.67146 1.23404 1.04343 1.04160 0.96023 1.87202 1.24846 1.68210 1.20894 1.21151 1.00250 0.99453 0.86323 1.20608 1.02899 1.33778 0.97723 0.91463 1.24957 0.96265 0.96042 0.96555 1.69939 1.27013 1.45681 1.10603 0.86406 0.81760 0.80430 0.78034 1.19861 1.21080 1.19877 1.20858 1.00718 0.89702 1.00873 1.16890 0.85916 0.82929 1.10052 1.91492 1.76376 1.49047 1.94421 0.92340 0.92168 0.87917 0.84335 0.84049 0.88494 0.89435 0.92475 0.90462 0.90927 0.88112 0.88213 0.94670 0.94697 0.92469 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.44 10.36 -19.58 -0.20 -3.64 16 3 C 0.10 1.11 6.69 -39.17 -0.26 0.85 16 4 C -0.18 -1.90 9.04 -39.45 -0.36 -2.26 16 5 C -0.06 -0.67 9.69 -39.60 -0.38 -1.06 16 6 C -0.12 -1.19 5.46 -104.61 -0.57 -1.76 16 7 C 0.16 1.52 5.57 -5.19 -0.03 1.50 16 8 N -0.62 -6.93 2.86 -182.96 -0.52 -7.45 16 9 C 0.08 0.61 10.29 59.85 0.62 1.23 16 10 C 0.54 8.31 7.69 -10.99 -0.08 8.22 16 11 O -0.51 -9.53 14.96 5.55 0.08 -9.45 16 12 C -0.13 -2.13 4.98 36.00 0.18 -1.95 16 13 S -0.24 -5.33 20.79 -107.50 -2.24 -7.57 16 14 C 0.08 1.95 5.70 36.00 0.21 2.15 16 15 C -0.51 -14.48 9.13 -34.44 -0.31 -14.79 16 16 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 19 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.10 -0.99 9.67 -39.54 -0.38 -1.37 16 24 C 0.06 0.71 7.31 -39.30 -0.29 0.43 16 25 F -0.13 -1.68 17.11 2.25 0.04 -1.64 16 26 H 0.06 0.32 7.67 -51.93 -0.40 -0.07 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 30 H 0.14 1.69 7.57 -52.49 -0.40 1.30 16 31 H 0.10 1.02 7.36 -51.93 -0.38 0.63 16 32 H 0.09 0.56 7.84 -51.93 -0.41 0.16 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 35 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 36 H 0.10 1.48 7.40 -51.92 -0.38 1.10 16 37 H 0.10 1.52 8.11 -51.93 -0.42 1.10 16 38 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 367.60 15.07 5.54 5.54 Total: -1.00 -33.71 367.60 -7.88 -41.59 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.52 Total: -2.73 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.78 Total: -5.91 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.21 Total: -32.59 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.12 Total: -13.09 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -2.24 Total: -7.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.71 -7.88 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.211 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds