Wall clock time and date at job start Tue Mar 31 2020 15:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38176 * 119.97332 * 180.28026 * 4 3 2 6 6 C 1.38263 * 120.09586 * 359.97378 * 5 4 3 7 7 C 1.50702 * 119.93682 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46996 * 270.02430 * 7 6 5 9 9 C 1.46507 * 119.99991 * 270.00067 * 8 7 6 10 10 C 1.34777 * 120.00455 * 90.00158 * 8 7 6 11 11 O 1.21283 * 119.99452 * 359.97438 * 10 8 7 12 12 C 1.50690 * 120.00419 * 180.02562 * 10 8 7 13 13 S 1.81404 * 109.47469 * 179.97438 * 12 10 8 14 14 C 1.81400 * 103.00084 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46705 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00430 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99742 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00042 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46961 * 60.00905 * 19 17 15 21 21 H 1.48498 * 109.46791 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47513 * 300.00249 * 19 17 15 23 23 C 1.38254 * 120.12337 * 0.04707 * 6 5 4 24 24 C 1.38326 * 120.03416 * 359.95854 * 23 6 5 25 25 F 1.35098 * 120.05006 * 179.97438 * 24 23 6 26 26 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 27 27 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 28 28 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 29 29 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 30 30 H 1.07999 * 119.95322 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47166 * 30.02267 * 7 6 5 32 32 H 1.08994 * 109.46843 * 150.02522 * 7 6 5 33 33 H 1.08997 * 109.47286 * 89.99939 * 9 8 7 34 34 H 1.08999 * 109.47254 * 210.00225 * 9 8 7 35 35 H 1.08998 * 109.46868 * 329.99801 * 9 8 7 36 36 H 1.09004 * 109.46898 * 299.99397 * 12 10 8 37 37 H 1.08997 * 109.47687 * 59.99495 * 12 10 8 38 38 H 1.09005 * 109.47024 * 299.99495 * 14 13 12 39 39 H 1.08990 * 109.47091 * 60.00029 * 14 13 12 40 40 H 0.96991 * 119.99888 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.98065 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0117 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0170 8 7 4.2068 5.4502 -1.4000 9 6 5.4487 5.0900 -2.0888 10 6 3.2682 6.1764 -2.0389 11 8 2.2400 6.4742 -1.4688 12 6 3.4959 6.6174 -3.4617 13 16 2.0624 7.5689 -4.0367 14 6 2.5174 8.0044 -5.7379 15 6 1.4085 8.8105 -6.3636 16 1 0.5192 9.0384 -5.7947 17 6 1.5297 9.2580 -7.6622 18 7 2.6128 8.9809 -8.3548 19 14 0.1548 10.2566 -8.4380 20 1 -0.0616 11.4966 -7.6501 21 1 0.5273 10.6133 -9.8306 22 1 -1.0942 9.4536 -8.4504 23 6 4.0580 2.5196 -0.0058 24 6 3.4334 1.2855 -0.0001 25 9 4.1713 0.1538 0.0047 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2138 2.3201 -0.0063 30 1 1.3344 4.5114 -0.0166 31 1 3.3564 5.7503 0.4934 32 1 4.9431 4.9440 0.4974 33 1 5.3179 4.1354 -2.5984 34 1 5.6960 5.8607 -2.8188 35 1 6.2562 5.0060 -1.3616 36 1 4.3891 7.2403 -3.5106 37 1 3.6286 5.7416 -4.0969 38 1 3.4347 8.5931 -5.7292 39 1 2.6751 7.0941 -6.3161 40 1 2.6978 9.2953 -9.2683 41 1 5.1365 2.5788 -0.0058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:23 Heat of formation + Delta-G solvation = -109.671202 kcal Electronic energy + Delta-G solvation = -24529.748974 eV Core-core repulsion = 20643.309443 eV Total energy + Delta-G solvation = -3886.439530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.86920 -41.34420 -40.67165 -38.71551 -36.49553 -35.27891 -32.78923 -31.79639 -30.83923 -30.49509 -28.79478 -27.69740 -26.27845 -25.15897 -23.81318 -22.72110 -20.48709 -19.37024 -18.66493 -18.27118 -18.00758 -17.79512 -17.43941 -17.20732 -16.93309 -16.65675 -16.12603 -16.07133 -15.83246 -15.38864 -15.23736 -14.63477 -14.56599 -14.50042 -14.21268 -14.13757 -13.98750 -13.49073 -13.36928 -13.24034 -13.13294 -12.75496 -12.70907 -12.59801 -12.53629 -12.13587 -12.11685 -12.00798 -11.60118 -10.98754 -10.73354 -10.61779 -10.00872 -9.78788 -9.24047 -8.46875 -8.32973 -6.45281 0.04979 0.07246 0.79187 1.40754 1.43618 1.51963 1.52400 2.00196 2.02600 2.13217 2.37707 2.58439 3.01897 3.12982 3.51354 3.62808 3.72074 3.93719 4.05628 4.18052 4.23496 4.30376 4.31210 4.35091 4.41181 4.45950 4.64892 4.68845 4.77736 4.82172 4.94921 4.96364 4.96666 4.97812 5.10886 5.41643 5.50391 5.57828 5.58597 5.90506 6.19570 6.22715 6.61318 7.07955 7.22347 8.78924 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.002428 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.075930 B =11529.713336 C =12272.166282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.088 3.912 4 C -0.186 4.186 5 C -0.073 4.073 6 C -0.119 4.119 7 C 0.160 3.840 8 N -0.604 5.604 9 C 0.065 3.935 10 C 0.533 3.467 11 O -0.552 6.552 12 C -0.114 4.114 13 S -0.272 6.272 14 C 0.085 3.915 15 C -0.538 4.538 16 H 0.058 0.942 17 C 0.018 3.982 18 N -0.923 5.923 19 Si 0.973 3.027 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.088 4.088 24 C 0.040 3.960 25 F -0.143 7.143 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.271 0.729 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -16.136 19.265 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.041 3.959 4 C -0.204 4.204 5 C -0.092 4.092 6 C -0.121 4.121 7 C 0.038 3.962 8 N -0.337 5.337 9 C -0.076 4.076 10 C 0.320 3.680 11 O -0.430 6.430 12 C -0.265 4.265 13 S -0.046 6.046 14 C -0.062 4.062 15 C -0.577 4.577 16 H 0.077 0.923 17 C -0.183 4.183 18 N -0.562 5.562 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.107 4.107 24 C 0.020 3.980 25 F -0.122 7.122 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.171 0.829 30 H 0.146 0.854 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.335 -15.955 19.961 25.919 hybrid contribution 0.311 -0.045 -1.474 1.507 sum 4.645 -16.000 18.487 24.886 Atomic orbital electron populations 1.23416 0.75841 1.05949 1.02504 1.86093 1.23975 1.25905 1.88605 1.19251 0.91222 0.86049 0.99353 1.21334 1.01347 0.90915 1.06816 1.21217 0.94954 0.97523 0.95519 1.20095 0.93393 0.95698 1.02866 1.20483 1.02624 0.91061 0.81992 1.47873 1.19011 1.52578 1.14279 1.22188 0.84804 1.01573 0.99081 1.19848 0.83302 0.77799 0.87022 1.90682 1.27871 1.56681 1.67749 1.23432 1.01764 1.04031 0.97227 1.87182 1.28990 1.69822 1.18593 1.20812 0.98977 0.98080 0.88366 1.20933 1.03401 1.34816 0.98571 0.92341 1.25853 0.98727 0.96856 0.96896 1.70028 1.28671 1.46390 1.11063 0.85375 0.78653 0.78890 0.77430 1.19200 1.19891 1.19292 1.21081 1.02085 0.88472 0.99091 1.17232 0.86182 0.83364 1.11189 1.91464 1.76522 1.49621 1.94620 0.91111 0.91912 0.85909 0.82934 0.85425 0.89798 0.85272 0.91834 0.90331 0.87303 0.85921 0.86689 0.96154 0.96395 0.92015 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.16 10.36 -92.97 -0.96 -8.12 16 3 C 0.09 1.96 6.69 22.53 0.15 2.11 16 4 C -0.19 -3.80 9.04 22.36 0.20 -3.60 16 5 C -0.07 -1.61 9.69 22.26 0.22 -1.40 16 6 C -0.12 -2.21 5.46 -19.85 -0.11 -2.32 16 7 C 0.16 2.60 5.57 85.63 0.48 3.08 16 8 N -0.60 -11.98 2.86 -851.15 -2.43 -14.41 16 9 C 0.07 0.80 10.29 127.77 1.31 2.11 16 10 C 0.53 15.93 7.69 87.65 0.67 16.60 16 11 O -0.55 -20.63 14.96 -3.04 -0.05 -20.68 16 12 C -0.11 -3.65 4.98 71.23 0.35 -3.29 16 13 S -0.27 -12.41 20.79 -56.49 -1.17 -13.58 16 14 C 0.09 4.51 5.70 71.24 0.41 4.92 16 15 C -0.54 -31.14 9.13 25.60 0.23 -30.91 16 16 H 0.06 3.41 7.71 -2.91 -0.02 3.39 16 17 C 0.02 1.00 5.46 84.66 0.46 1.46 16 18 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 19 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.09 -1.49 9.67 22.29 0.22 -1.27 16 24 C 0.04 0.88 7.31 22.45 0.16 1.04 16 25 F -0.14 -3.44 17.11 44.97 0.77 -2.67 16 26 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 27 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.15 2.51 6.30 -2.91 -0.02 2.50 16 30 H 0.13 3.16 7.57 -2.91 -0.02 3.13 16 31 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 32 H 0.13 1.06 7.84 -2.39 -0.02 1.04 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.98 6.44 -2.39 -0.02 0.96 16 35 H 0.11 0.60 7.89 -2.39 -0.02 0.59 16 36 H 0.12 3.40 7.40 -2.39 -0.02 3.39 16 37 H 0.11 3.35 8.11 -2.39 -0.02 3.33 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.02 0.98 8.14 -2.40 -0.02 0.96 16 40 H 0.27 14.72 8.31 -92.72 -0.77 13.95 16 41 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -74.89 367.60 5.38 -69.50 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.04 Total: 7.70 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.87 Total: -10.14 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -2.15 Total: -67.91 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.01 Total: -28.80 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.77 Total: -2.67 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -12.41 SS G_CDS: -1.17 Total: -13.58 kcal Total: -74.89 5.38 -69.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.166 kcal (2) G-P(sol) polarization free energy of solvation -74.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds