Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47232 * 2 1 4 4 C 1.39670 * 119.99942 * 275.00484 * 3 2 1 5 5 C 1.38950 * 120.06238 * 114.33900 * 4 3 2 6 6 C 1.38097 * 119.97205 * 179.69738 * 5 4 3 7 7 C 1.38270 * 120.10004 * 0.59808 * 6 5 4 8 8 C 1.38497 * 120.12442 * 359.67111 * 7 6 5 9 9 F 1.35101 * 119.99053 * 180.02562 * 8 7 6 10 10 C 1.38347 * 120.02406 * 0.03130 * 8 7 6 11 11 S 1.65596 * 120.00186 * 95.00145 * 3 2 1 12 12 O 1.42098 * 104.27803 * 338.62597 * 11 3 2 13 13 O 1.42100 * 104.28093 * 210.76425 * 11 3 2 14 14 C 1.81401 * 104.44979 * 94.69466 * 11 3 2 15 15 C 1.52996 * 109.47352 * 174.05025 * 14 11 3 16 16 C 1.50703 * 115.55036 * 61.41076 * 15 14 11 17 17 H 1.08002 * 119.99498 * 264.81788 * 16 15 14 18 18 C 1.37873 * 120.00273 * 84.81766 * 16 15 14 19 19 N 1.31512 * 119.99728 * 4.81681 * 18 16 15 20 20 Si 1.86795 * 120.00044 * 184.81741 * 18 16 15 21 21 H 1.48490 * 109.47299 * 60.00028 * 20 18 16 22 22 H 1.48507 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47336 * 299.99724 * 20 18 16 24 24 C 1.53005 * 117.49833 * 275.74016 * 15 14 11 25 25 C 1.53004 * 117.50078 * 207.08072 * 15 14 11 26 26 H 1.08995 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46960 * 300.00046 * 1 2 3 28 28 H 1.08998 * 109.47595 * 59.99622 * 1 2 3 29 29 H 1.08997 * 109.46621 * 240.00056 * 2 1 3 30 30 H 1.09004 * 109.46950 * 120.00255 * 2 1 3 31 31 H 1.07992 * 120.01243 * 359.97343 * 5 4 3 32 32 H 1.08006 * 119.95057 * 180.27226 * 6 5 4 33 33 H 1.08004 * 119.94173 * 179.70435 * 7 6 5 34 34 H 1.07996 * 120.05521 * 180.02562 * 10 8 7 35 35 H 1.09006 * 109.47092 * 294.05062 * 14 11 3 36 36 H 1.08997 * 109.47031 * 54.05203 * 14 11 3 37 37 H 0.97002 * 119.99885 * 185.00425 * 19 18 16 38 38 H 1.08993 * 117.49932 * 359.97438 * 24 15 14 39 39 H 1.08999 * 117.49609 * 145.02232 * 24 15 14 40 40 H 1.08996 * 117.49886 * 214.98147 * 25 15 14 41 41 H 1.08996 * 117.49308 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1517 2.0747 -1.2050 5 6 1.3525 3.1817 -1.4630 6 6 1.4902 3.8698 -2.6524 7 6 2.4138 3.4516 -3.5926 8 6 3.2086 2.3454 -3.3420 9 9 4.1105 1.9395 -4.2623 10 6 3.0792 1.6559 -2.1496 11 16 2.4123 2.1201 1.4286 12 8 1.7068 1.3775 2.4135 13 8 2.1270 3.4938 1.2030 14 6 4.1998 1.8602 1.5949 15 6 4.7160 2.6292 2.8127 16 6 4.1300 2.2162 4.1383 17 1 3.2857 2.7523 4.5460 18 6 4.6718 1.1541 4.8307 19 7 5.7568 0.5616 4.3821 20 14 3.8646 0.5567 6.4058 21 1 2.4739 0.1242 6.1161 22 1 4.6356 -0.5881 6.9537 23 1 3.8431 1.6595 7.4001 24 6 5.0579 4.1082 2.6215 25 6 6.1781 3.0796 2.7962 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6271 3.5064 -0.7319 32 1 0.8718 4.7329 -2.8507 33 1 2.5160 3.9889 -4.5239 34 1 3.6990 0.7935 -1.9535 35 1 4.4019 0.7969 1.7242 36 1 4.7042 2.2195 0.6979 37 1 6.0967 -0.2300 4.8279 38 1 4.9156 4.5333 1.6280 39 1 4.8595 4.7824 3.4546 40 1 6.7160 3.0776 3.7442 41 1 6.7723 2.8278 1.9179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436474217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = -62.569004 kcal Electronic energy + Delta-G solvation = -26759.270926 eV Core-core repulsion = 22874.873900 eV Total energy + Delta-G solvation = -3884.397026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.95779 -39.49450 -36.80635 -36.51758 -36.05941 -35.15845 -32.06576 -31.35590 -30.64545 -28.66807 -28.17221 -25.49253 -23.64132 -22.68571 -22.04028 -21.19602 -19.66999 -18.94767 -17.65588 -16.91944 -16.64746 -16.33155 -16.19698 -15.75692 -15.60359 -15.08635 -14.77502 -14.48496 -14.05393 -13.89514 -13.67536 -13.58496 -13.14896 -12.83227 -12.45419 -12.40598 -12.09305 -11.88184 -11.81161 -11.48754 -11.43390 -11.32042 -11.23380 -11.07464 -10.90662 -10.82593 -10.60599 -10.47061 -10.14189 -9.78426 -9.56535 -9.12512 -8.92784 -8.57128 -8.53344 -8.08652 -6.16990 -4.29348 0.72493 1.11563 1.15008 3.07706 3.31396 3.33766 3.42720 3.47939 4.17179 4.36333 4.45368 4.66270 4.74347 4.85488 4.93233 5.10362 5.11229 5.18072 5.23926 5.27367 5.29768 5.40852 5.56479 5.75233 5.80945 5.90409 5.94981 5.97545 6.13347 6.22505 6.24379 6.27782 6.33837 6.37568 6.58277 6.59195 6.71174 6.96654 7.03247 7.18843 7.44169 7.75965 8.16059 8.76722 9.43256 10.90523 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.004619 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.421779 B = 6060.613698 C = 6689.707644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.965 5.965 4 C 0.177 3.823 5 C -0.110 4.110 6 C -0.082 4.082 7 C -0.158 4.158 8 C 0.103 3.897 9 F -0.140 7.140 10 C -0.161 4.161 11 S 2.598 3.402 12 O -0.936 6.936 13 O -0.959 6.959 14 C -0.550 4.550 15 C 0.038 3.962 16 C -0.518 4.518 17 H 0.067 0.933 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.887 3.113 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.207 4.207 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 0.698 -14.954 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.793 5.793 4 C 0.083 3.917 5 C -0.131 4.131 6 C -0.101 4.101 7 C -0.177 4.177 8 C 0.083 3.917 9 F -0.119 7.119 10 C -0.183 4.183 11 S 2.698 3.302 12 O -0.926 6.926 13 O -0.950 6.950 14 C -0.683 4.683 15 C 0.036 3.964 16 C -0.555 4.555 17 H 0.085 0.915 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.714 3.286 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.245 4.245 25 C -0.172 4.172 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.122 0.929 -14.301 16.003 hybrid contribution 0.571 -0.894 0.336 1.112 sum -6.551 0.036 -13.965 15.425 Atomic orbital electron populations 1.22184 0.95637 1.02380 1.02756 1.21364 0.95048 0.80529 1.03595 1.56080 1.79159 1.23764 1.20263 1.17080 0.94433 0.93373 0.86836 1.21612 0.98673 0.95604 0.97227 1.20909 0.97391 0.99185 0.92566 1.21171 0.97929 0.97071 1.01541 1.17441 0.90820 0.95930 0.87498 1.91501 1.65370 1.90113 1.64905 1.21311 1.00584 1.02743 0.93631 1.05721 0.78881 0.73999 0.71600 1.93554 1.70774 1.72307 1.55977 1.93506 1.84428 1.33029 1.84001 1.29985 1.21446 1.11019 1.05891 1.18281 0.97061 0.89829 0.91257 1.20489 1.16076 1.16609 1.02288 0.91481 1.24941 0.93610 0.96139 0.97507 1.70012 1.19928 1.19531 1.41411 0.86701 0.80337 0.78541 0.83051 1.19125 1.21087 1.19843 1.23181 1.07047 0.93573 1.00651 1.22525 0.91725 1.01998 1.00947 0.91424 0.91475 0.92510 0.90575 0.88908 0.84269 0.84490 0.84678 0.84212 0.85237 0.88220 0.92663 0.90888 0.89532 0.89135 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.22 37.16 0.38 -1.69 16 2 C 0.12 1.55 5.92 -4.04 -0.02 1.53 16 3 N -0.96 -14.90 2.75 -58.64 -0.16 -15.07 16 4 C 0.18 2.52 5.16 -83.80 -0.43 2.09 16 5 C -0.11 -1.48 8.71 -39.37 -0.34 -1.83 16 6 C -0.08 -0.88 10.04 -39.62 -0.40 -1.28 16 7 C -0.16 -1.67 10.02 -39.47 -0.40 -2.06 16 8 C 0.10 1.25 7.30 -39.45 -0.29 0.97 16 9 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 10 C -0.16 -2.06 9.57 -39.31 -0.38 -2.44 16 11 S 2.60 51.95 5.02 -107.50 -0.54 51.41 16 12 O -0.94 -21.41 16.30 -57.54 -0.94 -22.35 16 13 O -0.96 -20.38 15.78 -57.54 -0.91 -21.29 16 14 C -0.55 -11.50 6.05 37.16 0.22 -11.27 16 15 C 0.04 0.93 1.46 -155.66 -0.23 0.70 16 16 C -0.52 -14.04 7.94 -34.44 -0.27 -14.32 16 17 H 0.07 1.86 7.82 -52.49 -0.41 1.44 16 18 C 0.08 2.25 5.43 -17.82 -0.10 2.16 16 19 N -0.87 -23.88 12.66 55.43 0.70 -23.18 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.21 -4.57 9.95 -26.69 -0.27 -4.84 16 25 C -0.13 -3.05 9.17 -26.69 -0.24 -3.30 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 30 H 0.09 1.27 7.47 -51.93 -0.39 0.88 16 31 H 0.14 1.93 7.47 -52.49 -0.39 1.54 16 32 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.74 8.14 -51.92 -0.42 2.32 16 36 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 37 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 40 H 0.09 2.22 8.14 -51.93 -0.42 1.79 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.23 363.84 -9.91 -41.13 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.80 Total: 4.93 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -2.76 Total: -35.58 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.54 Total: -38.24 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.85 Total: -43.64 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.54 Total: 51.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.23 -9.91 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436474217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.437 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds