Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47232 * 2 1 4 4 C 1.39670 * 119.99942 * 275.00484 * 3 2 1 5 5 C 1.38950 * 120.06238 * 114.33900 * 4 3 2 6 6 C 1.38097 * 119.97205 * 179.69738 * 5 4 3 7 7 C 1.38270 * 120.10004 * 0.59808 * 6 5 4 8 8 C 1.38497 * 120.12442 * 359.67111 * 7 6 5 9 9 F 1.35101 * 119.99053 * 180.02562 * 8 7 6 10 10 C 1.38347 * 120.02406 * 0.03130 * 8 7 6 11 11 S 1.65596 * 120.00186 * 95.00145 * 3 2 1 12 12 O 1.42098 * 104.27803 * 338.62597 * 11 3 2 13 13 O 1.42100 * 104.28093 * 210.76425 * 11 3 2 14 14 C 1.81401 * 104.44979 * 94.69466 * 11 3 2 15 15 C 1.52996 * 109.47352 * 174.05025 * 14 11 3 16 16 C 1.50703 * 115.55036 * 61.41076 * 15 14 11 17 17 H 1.08002 * 119.99498 * 264.81788 * 16 15 14 18 18 C 1.37873 * 120.00273 * 84.81766 * 16 15 14 19 19 N 1.31512 * 119.99728 * 4.81681 * 18 16 15 20 20 Si 1.86795 * 120.00044 * 184.81741 * 18 16 15 21 21 H 1.48490 * 109.47299 * 60.00028 * 20 18 16 22 22 H 1.48507 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47336 * 299.99724 * 20 18 16 24 24 C 1.53005 * 117.49833 * 275.74016 * 15 14 11 25 25 C 1.53004 * 117.50078 * 207.08072 * 15 14 11 26 26 H 1.08995 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46960 * 300.00046 * 1 2 3 28 28 H 1.08998 * 109.47595 * 59.99622 * 1 2 3 29 29 H 1.08997 * 109.46621 * 240.00056 * 2 1 3 30 30 H 1.09004 * 109.46950 * 120.00255 * 2 1 3 31 31 H 1.07992 * 120.01243 * 359.97343 * 5 4 3 32 32 H 1.08006 * 119.95057 * 180.27226 * 6 5 4 33 33 H 1.08004 * 119.94173 * 179.70435 * 7 6 5 34 34 H 1.07996 * 120.05521 * 180.02562 * 10 8 7 35 35 H 1.09006 * 109.47092 * 294.05062 * 14 11 3 36 36 H 1.08997 * 109.47031 * 54.05203 * 14 11 3 37 37 H 0.97002 * 119.99885 * 185.00425 * 19 18 16 38 38 H 1.08993 * 117.49932 * 359.97438 * 24 15 14 39 39 H 1.08999 * 117.49609 * 145.02232 * 24 15 14 40 40 H 1.08996 * 117.49886 * 214.98147 * 25 15 14 41 41 H 1.08996 * 117.49308 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1517 2.0747 -1.2050 5 6 1.3525 3.1817 -1.4630 6 6 1.4902 3.8698 -2.6524 7 6 2.4138 3.4516 -3.5926 8 6 3.2086 2.3454 -3.3420 9 9 4.1105 1.9395 -4.2623 10 6 3.0792 1.6559 -2.1496 11 16 2.4123 2.1201 1.4286 12 8 1.7068 1.3775 2.4135 13 8 2.1270 3.4938 1.2030 14 6 4.1998 1.8602 1.5949 15 6 4.7160 2.6292 2.8127 16 6 4.1300 2.2162 4.1383 17 1 3.2857 2.7523 4.5460 18 6 4.6718 1.1541 4.8307 19 7 5.7568 0.5616 4.3821 20 14 3.8646 0.5567 6.4058 21 1 2.4739 0.1242 6.1161 22 1 4.6356 -0.5881 6.9537 23 1 3.8431 1.6595 7.4001 24 6 5.0579 4.1082 2.6215 25 6 6.1781 3.0796 2.7962 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6271 3.5064 -0.7319 32 1 0.8718 4.7329 -2.8507 33 1 2.5160 3.9889 -4.5239 34 1 3.6990 0.7935 -1.9535 35 1 4.4019 0.7969 1.7242 36 1 4.7042 2.2195 0.6979 37 1 6.0967 -0.2300 4.8279 38 1 4.9156 4.5333 1.6280 39 1 4.8595 4.7824 3.4546 40 1 6.7160 3.0776 3.7442 41 1 6.7723 2.8278 1.9179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436474217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = -80.160147 kcal Electronic energy + Delta-G solvation = -26760.033735 eV Core-core repulsion = 22874.873900 eV Total energy + Delta-G solvation = -3885.159835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88853 -40.48777 -38.61027 -38.10982 -37.22203 -36.77581 -34.10860 -32.33425 -31.58301 -30.03211 -29.53034 -27.52008 -24.62095 -23.67853 -23.11638 -22.98413 -21.42453 -20.28261 -19.05842 -18.40393 -18.08703 -17.43185 -17.28011 -16.92578 -16.78760 -16.56727 -16.55261 -15.96782 -15.62023 -15.07539 -14.87904 -14.74010 -14.55970 -13.88923 -13.85808 -13.74368 -13.58130 -13.37852 -13.13318 -12.99553 -12.97248 -12.84503 -12.67506 -12.58387 -12.45175 -12.34893 -12.24133 -11.97476 -11.83595 -11.53103 -11.05465 -10.76664 -10.50939 -10.03786 -9.83897 -9.50213 -8.22353 -6.38534 -0.74507 0.13826 0.19309 1.37747 1.40335 1.49047 1.72833 2.38616 2.53160 2.88307 3.04042 3.19243 3.31481 3.39421 3.67857 3.86233 3.95523 4.07330 4.13847 4.18122 4.27082 4.30496 4.37152 4.46974 4.49035 4.56185 4.69958 4.79042 4.90670 4.94764 5.02857 5.10138 5.13029 5.17616 5.28852 5.33440 5.38320 5.39118 5.59612 5.62242 5.67245 6.00934 6.18142 6.68433 7.35074 8.84779 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.004619 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.421779 B = 6060.613698 C = 6689.707644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.955 5.955 4 C 0.154 3.846 5 C -0.127 4.127 6 C -0.074 4.074 7 C -0.145 4.145 8 C 0.094 3.906 9 F -0.142 7.142 10 C -0.163 4.163 11 S 2.614 3.386 12 O -0.974 6.974 13 O -0.976 6.976 14 C -0.551 4.551 15 C 0.008 3.992 16 C -0.535 4.535 17 H 0.049 0.951 18 C 0.045 3.955 19 N -0.892 5.892 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.268 1.268 24 C -0.195 4.195 25 C -0.132 4.132 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.266 0.734 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 0.986 -17.299 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.785 5.785 4 C 0.060 3.940 5 C -0.148 4.148 6 C -0.093 4.093 7 C -0.164 4.164 8 C 0.075 3.925 9 F -0.121 7.121 10 C -0.185 4.185 11 S 2.714 3.286 12 O -0.964 6.964 13 O -0.966 6.966 14 C -0.684 4.684 15 C 0.006 3.994 16 C -0.572 4.572 17 H 0.067 0.933 18 C -0.158 4.158 19 N -0.528 5.528 20 Si 0.755 3.245 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.193 1.193 24 C -0.232 4.232 25 C -0.171 4.171 26 H 0.110 0.890 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.166 0.834 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.354 1.225 -16.627 18.222 hybrid contribution 0.615 -0.940 0.934 1.461 sum -6.740 0.286 -15.692 17.081 Atomic orbital electron populations 1.22180 0.94863 1.03734 1.01982 1.21651 0.95824 0.79470 1.04566 1.55563 1.78849 1.24557 1.19541 1.17214 0.95987 0.94268 0.86546 1.21730 0.98827 0.95935 0.98314 1.21242 0.97330 0.99459 0.91226 1.21531 0.96382 0.96070 1.02371 1.17602 0.91175 0.96482 0.87288 1.91500 1.65522 1.90227 1.64861 1.21362 1.00283 1.03157 0.93680 1.04930 0.78132 0.73481 0.72013 1.93500 1.71413 1.73035 1.58472 1.93469 1.84406 1.34186 1.84568 1.29901 1.22893 1.10041 1.05545 1.18413 0.97912 0.91669 0.91429 1.20670 1.15732 1.16836 1.03980 0.93291 1.25494 0.94151 0.96385 0.99769 1.70059 1.20500 1.19837 1.42371 0.86034 0.79223 0.78635 0.80627 1.19970 1.19681 1.19280 1.23219 1.05587 0.92603 1.01763 1.22452 0.91459 1.02519 1.00681 0.89031 0.94032 0.91422 0.87406 0.90059 0.85421 0.81346 0.81629 0.83434 0.86077 0.85574 0.92479 0.88563 0.89889 0.91306 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 10.22 71.98 0.74 -3.21 16 2 C 0.11 2.74 5.92 86.38 0.51 3.25 16 3 N -0.95 -28.92 2.75 -339.44 -0.93 -29.85 16 4 C 0.15 4.13 5.16 38.21 0.20 4.33 16 5 C -0.13 -3.20 8.71 22.41 0.20 -3.00 16 6 C -0.07 -1.35 10.04 22.24 0.22 -1.13 16 7 C -0.14 -2.50 10.02 22.34 0.22 -2.28 16 8 C 0.09 2.02 7.30 22.36 0.16 2.19 16 9 F -0.14 -3.16 17.27 44.97 0.78 -2.39 16 10 C -0.16 -3.83 9.57 22.44 0.21 -3.61 16 11 S 2.61 105.41 5.02 -56.49 -0.28 105.12 16 12 O -0.97 -45.98 16.30 -127.65 -2.08 -48.06 16 13 O -0.98 -41.52 15.78 -127.65 -2.01 -43.53 16 14 C -0.55 -22.95 6.05 71.98 0.44 -22.52 16 15 C 0.01 0.39 1.46 -52.92 -0.08 0.31 16 16 C -0.53 -29.66 7.94 25.60 0.20 -29.46 16 17 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 18 C 0.05 2.48 5.43 84.65 0.46 2.93 16 19 N -0.89 -49.21 12.66 21.45 0.27 -48.94 16 20 Si 0.93 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C -0.19 -8.47 9.95 30.62 0.30 -8.16 16 25 C -0.13 -6.04 9.17 30.62 0.28 -5.76 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.17 8.11 -2.38 -0.02 1.15 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.11 2.04 7.82 -2.39 -0.02 2.02 16 30 H 0.08 2.25 7.47 -2.38 -0.02 2.23 16 31 H 0.13 3.47 7.47 -2.91 -0.02 3.44 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.12 5.20 8.14 -2.39 -0.02 5.18 16 36 H 0.13 4.42 8.11 -2.39 -0.02 4.40 16 37 H 0.27 13.95 8.32 -92.71 -0.77 13.18 16 38 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -67.81 363.84 2.86 -64.96 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 1.02 Total: 22.81 kcal Atomic # 6 Polarization: -70.19 SS G_CDS: 4.07 Total: -66.12 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -0.66 Total: -78.79 kcal Atomic # 8 Polarization: -87.50 SS G_CDS: -4.09 Total: -91.60 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 105.41 SS G_CDS: -0.28 Total: 105.12 kcal Total: -67.81 2.86 -64.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436474217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.204 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds