Wall clock time and date at job start Tue Mar 31 2020 15:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46847 * 2 1 4 4 C 1.39816 * 119.99884 * 85.00264 * 3 2 1 5 5 C 1.38873 * 120.05362 * 334.99408 * 4 3 2 6 6 C 1.38118 * 119.95390 * 180.30092 * 5 4 3 7 7 C 1.38463 * 120.04979 * 359.46966 * 6 5 4 8 8 F 1.35100 * 119.95106 * 180.25651 * 7 6 5 9 9 C 1.38462 * 120.09700 * 0.51265 * 7 6 5 10 10 C 1.38127 * 120.05040 * 359.76487 * 9 7 6 11 11 S 1.65599 * 119.99745 * 264.99677 * 3 2 1 12 12 O 1.42099 * 104.27833 * 26.07431 * 11 3 2 13 13 O 1.42107 * 104.27492 * 153.93220 * 11 3 2 14 14 C 1.81400 * 104.45288 * 270.00109 * 11 3 2 15 15 C 1.52997 * 109.47386 * 173.86899 * 14 11 3 16 16 C 1.50703 * 115.54803 * 65.19985 * 15 14 11 17 17 H 1.08004 * 120.00069 * 264.78965 * 16 15 14 18 18 C 1.37879 * 120.00112 * 84.78213 * 16 15 14 19 19 N 1.31517 * 119.99812 * 352.22758 * 18 16 15 20 20 Si 1.86797 * 119.99859 * 172.22604 * 18 16 15 21 21 H 1.48502 * 109.47146 * 60.00590 * 20 18 16 22 22 H 1.48508 * 109.46820 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47538 * 300.00000 * 20 18 16 24 24 C 1.52991 * 117.50006 * 279.53115 * 15 14 11 25 25 C 1.52992 * 117.50079 * 210.86641 * 15 14 11 26 26 H 1.09000 * 109.47292 * 299.99860 * 1 2 3 27 27 H 1.09002 * 109.47433 * 59.99676 * 1 2 3 28 28 H 1.09005 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47292 * 240.00140 * 2 1 3 30 30 H 1.09000 * 109.47083 * 119.99631 * 2 1 3 31 31 H 1.08012 * 120.02459 * 0.03049 * 5 4 3 32 32 H 1.08003 * 119.97322 * 179.69749 * 6 5 4 33 33 H 1.08001 * 119.97879 * 179.74462 * 9 7 6 34 34 H 1.07995 * 120.02729 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47154 * 293.87373 * 14 11 3 36 36 H 1.08999 * 109.46860 * 53.86879 * 14 11 3 37 37 H 0.96996 * 119.99530 * 185.02064 * 19 18 16 38 38 H 1.08995 * 117.50148 * 359.97438 * 24 15 14 39 39 H 1.09003 * 117.50104 * 145.02423 * 24 15 14 40 40 H 1.09000 * 117.50392 * 214.98065 * 25 15 14 41 41 H 1.09000 * 117.49900 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1518 2.0755 1.2063 5 6 1.3818 1.7159 2.3046 6 6 1.5109 2.4071 3.4934 7 6 2.4152 3.4509 3.5938 8 9 2.5435 4.1223 4.7591 9 6 3.1842 3.8110 2.5002 10 6 3.0543 3.1263 1.3076 11 16 2.4121 2.1202 -1.4287 12 8 1.6208 1.4495 -2.3999 13 8 2.2333 3.5056 -1.1676 14 6 4.1696 1.7389 -1.6661 15 6 4.6198 2.2423 -3.0390 16 6 4.5875 3.7373 -3.2258 17 1 3.7276 4.2063 -3.6808 18 6 5.6558 4.5066 -2.8157 19 7 6.6332 3.9601 -2.1259 20 14 5.7148 6.3248 -3.2398 21 1 4.5343 7.0085 -2.6530 22 1 6.9578 6.9216 -2.6882 23 1 5.6996 6.4897 -4.7154 24 6 4.2913 1.3714 -4.2532 25 6 5.7325 1.4659 -3.7461 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6793 0.8990 2.2280 32 1 0.9088 2.1309 4.3463 33 1 3.8859 4.6282 2.5794 34 1 3.6540 3.4077 0.4547 35 1 4.7560 2.2294 -0.8891 36 1 4.3186 0.6608 -1.6076 37 1 7.3478 4.5142 -1.7751 38 1 3.7548 0.4397 -4.0741 39 1 4.0523 1.8798 -5.1874 40 1 6.4409 2.0364 -4.3467 41 1 6.1441 0.5968 -3.2330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450989594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:40 Heat of formation + Delta-G solvation = -59.593408 kcal Electronic energy + Delta-G solvation = -26829.890735 eV Core-core repulsion = 22945.622740 eV Total energy + Delta-G solvation = -3884.267994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.72739 -39.54974 -36.86814 -36.72967 -35.99058 -35.26101 -32.12055 -31.56656 -30.66944 -28.41643 -28.22263 -25.54438 -23.54812 -22.95242 -21.87571 -21.29500 -19.67721 -18.89209 -17.70390 -17.41954 -16.88585 -16.49036 -15.63314 -15.42682 -15.23044 -15.12925 -14.72330 -14.54398 -13.97494 -13.87206 -13.64063 -13.34281 -13.19264 -13.14457 -13.02361 -12.30150 -12.14308 -11.94531 -11.91068 -11.70234 -11.43959 -11.33430 -11.14126 -10.96082 -10.95380 -10.70487 -10.66588 -10.54738 -10.29588 -10.13008 -9.72188 -9.05633 -9.04314 -8.63746 -8.24526 -7.85486 -6.21115 -4.32735 0.74115 1.26264 1.29385 2.98664 3.28526 3.31141 3.37478 3.64393 4.31551 4.38381 4.40956 4.54165 4.60608 4.84672 4.89872 5.02786 5.06110 5.11063 5.17121 5.27302 5.34133 5.40535 5.57448 5.62556 5.80704 5.82920 5.88801 6.03540 6.13521 6.15644 6.25137 6.26596 6.34704 6.45775 6.51716 6.63246 6.66070 6.90083 7.06568 7.13494 7.31148 7.73307 8.11205 8.73145 9.39239 10.86249 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.005629 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.574207 B = 4973.216063 C = 6626.169377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 N -0.949 5.949 4 C 0.175 3.825 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.063 3.937 8 F -0.145 7.145 9 C -0.112 4.112 10 C -0.123 4.123 11 S 2.589 3.411 12 O -0.957 6.957 13 O -0.933 6.933 14 C -0.550 4.550 15 C 0.042 3.958 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.084 3.916 19 N -0.873 5.873 20 Si 0.889 3.111 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.208 4.208 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 -8.202 9.210 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.013 4.013 3 N -0.771 5.771 4 C 0.078 3.922 5 C -0.155 4.155 6 C -0.148 4.148 7 C 0.043 3.957 8 F -0.124 7.124 9 C -0.132 4.132 10 C -0.144 4.144 11 S 2.689 3.311 12 O -0.948 6.948 13 O -0.923 6.923 14 C -0.684 4.684 15 C 0.039 3.961 16 C -0.556 4.556 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.508 5.508 20 Si 0.716 3.284 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.245 4.245 25 C -0.178 4.178 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.732 -7.718 8.695 13.963 hybrid contribution 0.776 0.733 0.305 1.110 sum -6.956 -6.986 8.999 13.348 Atomic orbital electron populations 1.22339 0.95429 1.02627 1.03341 1.21403 0.95415 0.80708 1.03773 1.56307 1.76841 1.22983 1.20975 1.17538 0.94954 0.93445 0.86288 1.20829 1.00464 1.02331 0.91851 1.20886 0.99182 0.95919 0.98825 1.17606 1.00637 0.95149 0.82340 1.91466 1.95286 1.79369 1.46294 1.20943 1.00035 1.00878 0.91314 1.21192 0.98256 0.95950 0.99008 1.06045 0.78816 0.74347 0.71891 1.93512 1.67496 1.75960 1.57826 1.93589 1.85828 1.30284 1.82577 1.30060 1.20737 1.07699 1.09878 1.18288 1.00565 0.93330 0.83925 1.20479 1.03804 0.88463 1.42903 0.91350 1.24946 0.94646 0.98741 0.93830 1.69960 1.11552 1.35874 1.33426 0.86671 0.77837 0.84657 0.79262 1.19372 1.21014 1.19816 1.23211 0.99959 1.01179 1.00161 1.22564 0.90739 1.00734 1.03732 0.91914 0.91189 0.91214 0.89193 0.89916 0.84383 0.84737 0.84098 0.83405 0.84517 0.88084 0.92521 0.90676 0.89389 0.89427 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.97 37.16 0.37 -1.56 16 2 C 0.11 1.31 5.33 -4.04 -0.02 1.29 16 3 N -0.95 -14.67 2.93 -58.61 -0.17 -14.85 16 4 C 0.17 2.68 6.05 -83.74 -0.51 2.18 16 5 C -0.13 -1.66 8.88 -39.39 -0.35 -2.01 16 6 C -0.13 -1.55 10.02 -39.54 -0.40 -1.94 16 7 C 0.06 0.87 7.30 -39.42 -0.29 0.59 16 8 F -0.15 -2.02 17.26 2.25 0.04 -1.98 16 9 C -0.11 -1.69 10.02 -39.54 -0.40 -2.09 16 10 C -0.12 -2.07 8.42 -39.38 -0.33 -2.40 16 11 S 2.59 51.18 4.47 -107.50 -0.48 50.70 16 12 O -0.96 -19.97 16.75 -57.54 -0.96 -20.93 16 13 O -0.93 -21.51 14.83 -57.54 -0.85 -22.36 16 14 C -0.55 -11.09 5.92 37.16 0.22 -10.87 16 15 C 0.04 0.97 1.32 -155.67 -0.21 0.77 16 16 C -0.52 -13.72 8.18 -34.44 -0.28 -14.00 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.16 12.98 55.43 0.72 -22.44 16 20 Si 0.89 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 25 C -0.14 -3.03 9.49 -26.70 -0.25 -3.28 16 26 H 0.06 0.62 5.88 -51.93 -0.31 0.31 16 27 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.01 7.61 -51.93 -0.40 0.62 16 30 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 31 H 0.14 1.36 5.24 -52.48 -0.28 1.08 16 32 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.15 2.78 5.11 -52.49 -0.27 2.51 16 35 H 0.14 2.86 7.14 -51.92 -0.37 2.49 16 36 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 37 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -30.65 353.99 -9.55 -40.21 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.35 Total: 6.39 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -2.80 Total: -35.87 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.55 Total: -37.28 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.82 Total: -43.30 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.48 Total: 50.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.65 -9.55 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450989594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds