Wall clock time and date at job start Tue Mar 31 2020 15:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46847 * 2 1 4 4 C 1.39816 * 119.99884 * 85.00264 * 3 2 1 5 5 C 1.38873 * 120.05362 * 334.99408 * 4 3 2 6 6 C 1.38118 * 119.95390 * 180.30092 * 5 4 3 7 7 C 1.38463 * 120.04979 * 359.46966 * 6 5 4 8 8 F 1.35100 * 119.95106 * 180.25651 * 7 6 5 9 9 C 1.38462 * 120.09700 * 0.51265 * 7 6 5 10 10 C 1.38127 * 120.05040 * 359.76487 * 9 7 6 11 11 S 1.65599 * 119.99745 * 264.99677 * 3 2 1 12 12 O 1.42099 * 104.27833 * 26.07431 * 11 3 2 13 13 O 1.42107 * 104.27492 * 153.93220 * 11 3 2 14 14 C 1.81400 * 104.45288 * 270.00109 * 11 3 2 15 15 C 1.52997 * 109.47386 * 173.86899 * 14 11 3 16 16 C 1.50703 * 115.54803 * 65.19985 * 15 14 11 17 17 H 1.08004 * 120.00069 * 264.78965 * 16 15 14 18 18 C 1.37879 * 120.00112 * 84.78213 * 16 15 14 19 19 N 1.31517 * 119.99812 * 352.22758 * 18 16 15 20 20 Si 1.86797 * 119.99859 * 172.22604 * 18 16 15 21 21 H 1.48502 * 109.47146 * 60.00590 * 20 18 16 22 22 H 1.48508 * 109.46820 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47538 * 300.00000 * 20 18 16 24 24 C 1.52991 * 117.50006 * 279.53115 * 15 14 11 25 25 C 1.52992 * 117.50079 * 210.86641 * 15 14 11 26 26 H 1.09000 * 109.47292 * 299.99860 * 1 2 3 27 27 H 1.09002 * 109.47433 * 59.99676 * 1 2 3 28 28 H 1.09005 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47292 * 240.00140 * 2 1 3 30 30 H 1.09000 * 109.47083 * 119.99631 * 2 1 3 31 31 H 1.08012 * 120.02459 * 0.03049 * 5 4 3 32 32 H 1.08003 * 119.97322 * 179.69749 * 6 5 4 33 33 H 1.08001 * 119.97879 * 179.74462 * 9 7 6 34 34 H 1.07995 * 120.02729 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47154 * 293.87373 * 14 11 3 36 36 H 1.08999 * 109.46860 * 53.86879 * 14 11 3 37 37 H 0.96996 * 119.99530 * 185.02064 * 19 18 16 38 38 H 1.08995 * 117.50148 * 359.97438 * 24 15 14 39 39 H 1.09003 * 117.50104 * 145.02423 * 24 15 14 40 40 H 1.09000 * 117.50392 * 214.98065 * 25 15 14 41 41 H 1.09000 * 117.49900 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1518 2.0755 1.2063 5 6 1.3818 1.7159 2.3046 6 6 1.5109 2.4071 3.4934 7 6 2.4152 3.4509 3.5938 8 9 2.5435 4.1223 4.7591 9 6 3.1842 3.8110 2.5002 10 6 3.0543 3.1263 1.3076 11 16 2.4121 2.1202 -1.4287 12 8 1.6208 1.4495 -2.3999 13 8 2.2333 3.5056 -1.1676 14 6 4.1696 1.7389 -1.6661 15 6 4.6198 2.2423 -3.0390 16 6 4.5875 3.7373 -3.2258 17 1 3.7276 4.2063 -3.6808 18 6 5.6558 4.5066 -2.8157 19 7 6.6332 3.9601 -2.1259 20 14 5.7148 6.3248 -3.2398 21 1 4.5343 7.0085 -2.6530 22 1 6.9578 6.9216 -2.6882 23 1 5.6996 6.4897 -4.7154 24 6 4.2913 1.3714 -4.2532 25 6 5.7325 1.4659 -3.7461 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6793 0.8990 2.2280 32 1 0.9088 2.1309 4.3463 33 1 3.8859 4.6282 2.5794 34 1 3.6540 3.4077 0.4547 35 1 4.7560 2.2294 -0.8891 36 1 4.3186 0.6608 -1.6076 37 1 7.3478 4.5142 -1.7751 38 1 3.7548 0.4397 -4.0741 39 1 4.0523 1.8798 -5.1874 40 1 6.4409 2.0364 -4.3467 41 1 6.1441 0.5968 -3.2330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450989594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:39 Heat of formation + Delta-G solvation = -77.388261 kcal Electronic energy + Delta-G solvation = -26830.662377 eV Core-core repulsion = 22945.622740 eV Total energy + Delta-G solvation = -3885.039637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.81449 -40.66144 -38.62073 -38.26277 -37.19819 -36.84975 -34.11773 -32.60377 -31.69199 -29.97372 -29.38068 -27.52890 -24.56191 -24.02655 -23.05986 -22.94172 -21.41873 -20.26325 -19.02025 -18.70672 -18.34951 -17.92471 -17.04521 -16.81776 -16.55625 -16.51719 -16.40270 -15.70639 -15.64150 -15.05915 -14.94149 -14.74732 -14.44891 -14.14631 -14.08872 -13.79609 -13.70588 -13.39390 -13.19272 -13.06509 -13.00346 -12.93680 -12.88120 -12.68637 -12.48378 -12.27038 -11.99621 -11.84356 -11.79856 -11.63792 -11.21713 -10.90988 -10.57735 -10.12925 -9.98638 -9.00904 -8.22447 -6.37319 -0.77259 0.14771 0.21369 1.37098 1.38641 1.45646 1.64660 2.36868 2.51857 2.88878 3.02959 3.18109 3.30762 3.35223 3.41839 3.79435 3.86338 3.97274 4.08400 4.18359 4.23198 4.30197 4.44849 4.46154 4.50237 4.55571 4.69340 4.77742 4.87362 4.95320 4.96174 5.05901 5.14840 5.16591 5.20350 5.35729 5.41411 5.42351 5.56687 5.58024 5.68199 5.97213 6.18393 6.68549 7.35317 8.84176 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.005629 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.574207 B = 4973.216063 C = 6626.169377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 N -0.942 5.942 4 C 0.160 3.840 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.058 3.942 8 F -0.145 7.145 9 C -0.126 4.126 10 C -0.153 4.153 11 S 2.605 3.395 12 O -0.973 6.973 13 O -0.977 6.977 14 C -0.549 4.549 15 C 0.008 3.992 16 C -0.536 4.536 17 H 0.048 0.952 18 C 0.047 3.953 19 N -0.889 5.889 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.273 1.273 23 H -0.267 1.267 24 C -0.195 4.195 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.266 0.734 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 -10.469 10.976 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.028 4.028 3 N -0.767 5.767 4 C 0.063 3.937 5 C -0.140 4.140 6 C -0.132 4.132 7 C 0.037 3.963 8 F -0.124 7.124 9 C -0.145 4.145 10 C -0.174 4.174 11 S 2.705 3.295 12 O -0.963 6.963 13 O -0.967 6.967 14 C -0.682 4.682 15 C 0.006 3.994 16 C -0.573 4.573 17 H 0.066 0.934 18 C -0.157 4.157 19 N -0.525 5.525 20 Si 0.755 3.245 21 H -0.204 1.204 22 H -0.198 1.198 23 H -0.192 1.192 24 C -0.232 4.232 25 C -0.175 4.175 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.060 -9.987 10.438 17.052 hybrid contribution 1.136 1.398 -0.182 1.811 sum -7.924 -8.589 10.256 15.548 Atomic orbital electron populations 1.22374 0.94525 1.04451 1.02469 1.21894 0.96301 0.78666 1.05891 1.55879 1.76769 1.24425 1.19598 1.17727 0.95524 0.93442 0.86962 1.21178 0.99658 1.02655 0.90525 1.21305 0.97973 0.94126 0.99763 1.17729 1.00930 0.95771 0.81833 1.91467 1.95331 1.79534 1.46097 1.20994 1.00807 1.01127 0.91582 1.21068 0.99712 0.97896 0.98752 1.05226 0.78307 0.73453 0.72479 1.93480 1.67618 1.75990 1.59229 1.93530 1.86253 1.33332 1.83582 1.29928 1.21134 1.09613 1.07501 1.18401 1.02574 0.92246 0.86176 1.20643 1.03168 0.90726 1.42792 0.93402 1.25469 0.94667 1.01560 0.93989 1.70003 1.11827 1.36676 1.33978 0.86041 0.77725 0.81450 0.79275 1.20360 1.19804 1.19202 1.23265 0.99450 1.01515 0.98943 1.22525 0.90648 1.00922 1.03439 0.90750 0.94112 0.88034 0.88723 0.86242 0.80886 0.80847 0.84147 0.86516 0.85910 0.84619 0.92452 0.88016 0.89859 0.91455 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 9.97 71.98 0.72 -2.55 16 2 C 0.09 1.93 5.33 86.38 0.46 2.39 16 3 N -0.94 -27.82 2.93 -339.34 -0.99 -28.82 16 4 C 0.16 4.70 6.05 38.17 0.23 4.93 16 5 C -0.12 -2.52 8.88 22.39 0.20 -2.33 16 6 C -0.11 -2.28 10.02 22.29 0.22 -2.06 16 7 C 0.06 1.50 7.30 22.38 0.16 1.66 16 8 F -0.15 -3.79 17.26 44.97 0.78 -3.01 16 9 C -0.13 -3.85 10.02 22.30 0.22 -3.62 16 10 C -0.15 -5.28 8.42 22.40 0.19 -5.09 16 11 S 2.61 103.95 4.47 -56.49 -0.25 103.70 16 12 O -0.97 -40.36 16.75 -127.65 -2.14 -42.49 16 13 O -0.98 -47.12 14.83 -127.65 -1.89 -49.01 16 14 C -0.55 -22.21 5.92 71.98 0.43 -21.78 16 15 C 0.01 0.40 1.32 -52.93 -0.07 0.33 16 16 C -0.54 -29.32 8.18 25.60 0.21 -29.11 16 17 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 18 C 0.05 2.53 5.38 84.65 0.46 2.98 16 19 N -0.89 -48.32 12.98 21.45 0.28 -48.04 16 20 Si 0.93 43.74 29.55 68.60 2.03 45.77 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.19 -8.07 9.96 30.62 0.30 -7.77 16 25 C -0.14 -5.92 9.49 30.62 0.29 -5.63 16 26 H 0.07 1.15 5.88 -2.39 -0.01 1.13 16 27 H 0.04 0.99 7.90 -2.39 -0.02 0.97 16 28 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.84 7.61 -2.39 -0.02 1.83 16 30 H 0.12 1.58 7.74 -2.39 -0.02 1.56 16 31 H 0.17 2.44 5.24 -2.90 -0.02 2.42 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.74 5.11 -2.91 -0.01 4.72 16 35 H 0.12 5.33 7.14 -2.39 -0.02 5.31 16 36 H 0.14 4.34 8.09 -2.39 -0.02 4.32 16 37 H 0.27 13.83 8.32 -92.71 -0.77 13.05 16 38 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -69.02 353.99 2.87 -66.15 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 1.05 Total: 23.40 kcal Atomic # 6 Polarization: -71.67 SS G_CDS: 4.02 Total: -67.65 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -0.72 Total: -76.86 kcal Atomic # 8 Polarization: -87.48 SS G_CDS: -4.03 Total: -91.51 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 103.95 SS G_CDS: -0.25 Total: 103.70 kcal Total: -69.02 2.87 -66.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450989594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.236 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds