Wall clock time and date at job start Tue Mar 31 2020 15:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 O 1.42901 * 109.47504 * 119.99931 * 2 1 3 5 5 C 1.35769 * 116.99700 * 89.99989 * 4 2 1 6 6 N 1.32133 * 119.71405 * 0.27206 * 5 4 2 7 7 C 1.32005 * 121.73115 * 180.26727 * 6 5 4 8 8 C 1.38172 * 120.95293 * 359.74932 * 7 6 5 9 9 Cl 1.73602 * 120.34412 * 179.97438 * 8 7 6 10 10 C 1.38836 * 119.32215 * 359.97426 * 8 7 6 11 11 C 1.38943 * 118.41105 * 0.02562 * 10 8 7 12 12 N 1.40172 * 120.49535 * 179.97438 * 11 10 8 13 13 C 1.34769 * 120.00159 * 325.88275 * 12 11 10 14 14 O 1.21595 * 120.00053 * 4.21358 * 13 12 11 15 15 N 1.34775 * 119.99995 * 184.22055 * 13 12 11 16 16 C 1.46499 * 119.99934 * 179.97438 * 15 13 12 17 17 H 1.09007 * 109.47239 * 35.00332 * 16 15 13 18 18 C 1.52994 * 109.47570 * 275.00027 * 16 15 13 19 19 C 1.50704 * 109.47271 * 154.99754 * 16 15 13 20 20 H 1.08001 * 119.99787 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00520 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99414 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00163 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46796 * 90.00188 * 23 21 19 25 25 H 1.48499 * 109.46949 * 209.99800 * 23 21 19 26 26 H 1.48500 * 109.47261 * 329.99943 * 23 21 19 27 27 H 1.09003 * 109.47019 * 299.99337 * 1 2 3 28 28 H 1.08999 * 109.47672 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47291 * 240.00652 * 2 1 3 31 31 H 1.09001 * 109.47475 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47012 * 300.00665 * 3 2 1 33 33 H 1.09002 * 109.47079 * 60.00218 * 3 2 1 34 34 H 1.08001 * 119.52696 * 179.72336 * 7 6 5 35 35 H 1.08003 * 120.79552 * 180.02562 * 10 8 7 36 36 H 0.97006 * 119.99527 * 145.87878 * 12 11 10 37 37 H 0.96996 * 120.00533 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47590 * 180.02562 * 18 16 15 39 39 H 1.09006 * 109.46577 * 299.99827 * 18 16 15 40 40 H 1.08992 * 109.47378 * 59.99794 * 18 16 15 41 41 H 0.97007 * 119.99572 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0118 1.0651 6 7 1.9752 -2.6256 -0.0808 7 6 2.1563 -3.9255 -0.2225 8 6 2.6088 -4.6988 0.8293 9 17 2.8408 -6.4071 0.6256 10 6 2.8760 -4.0956 2.0510 11 6 2.6758 -2.7258 2.1697 12 7 2.9313 -2.0722 3.3831 13 6 2.7013 -2.7047 4.5507 14 8 2.3454 -3.8674 4.5525 15 7 2.8655 -2.0484 5.7164 16 6 2.6149 -2.7358 6.9856 17 1 2.9146 -3.7803 6.8985 18 6 1.1243 -2.6592 7.3215 19 6 3.4113 -2.0746 8.0809 20 1 4.0415 -1.2273 7.8541 21 6 3.3364 -2.5518 9.3722 22 7 2.5702 -3.5845 9.6480 23 14 4.3241 -1.7325 10.7296 24 1 3.5150 -0.6509 11.3467 25 1 4.6749 -2.7394 11.7632 26 1 5.5676 -1.1560 10.1581 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9474 -4.3913 -1.1742 35 1 3.2309 -4.6773 2.8889 36 1 3.2737 -1.1646 3.3824 37 1 3.1497 -1.1210 5.7151 38 1 0.9379 -3.1703 8.2661 39 1 0.8248 -1.6148 7.4087 40 1 0.5483 -3.1375 6.5295 41 1 2.5172 -3.9201 10.5567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455847517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:03 Heat of formation + Delta-G solvation = -40.981083 kcal Electronic energy + Delta-G solvation = -25499.949380 eV Core-core repulsion = 21634.364732 eV Total energy + Delta-G solvation = -3865.584648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13449 -39.44749 -38.37157 -36.54938 -35.46755 -34.43621 -33.30345 -32.58170 -31.45070 -29.69319 -28.29882 -27.48478 -25.28331 -24.50159 -23.33345 -21.63881 -21.17596 -19.94965 -18.80027 -18.35664 -17.66655 -16.74208 -16.06578 -15.92117 -15.55069 -14.97510 -14.92308 -14.49550 -14.35533 -14.04870 -13.82394 -13.36689 -13.22632 -12.90110 -12.72229 -12.55294 -12.42622 -12.32144 -11.87941 -11.78634 -11.37223 -11.13448 -11.11418 -11.04209 -10.88926 -10.81924 -10.57869 -10.35299 -10.26013 -10.09170 -9.48530 -9.09085 -9.05594 -8.60128 -8.16173 -7.78763 -6.15387 -4.24780 0.88012 1.08563 2.00160 2.80073 2.99208 3.22797 3.30057 3.32306 3.42707 3.83198 4.12798 4.29719 4.61369 4.67810 4.74398 4.77924 4.92166 5.01975 5.16214 5.18514 5.30686 5.36179 5.50814 5.58516 5.70487 5.82890 5.92037 5.99976 6.13150 6.64740 6.74653 6.94608 7.03720 7.10517 7.16391 7.39250 7.58064 7.58866 7.77804 7.93879 8.11619 8.66755 8.78429 9.13872 9.43096 10.90658 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.003308 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.599564 B = 8462.507267 C =10237.678480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 C -0.151 4.151 4 O -0.298 6.298 5 C 0.298 3.702 6 N -0.508 5.508 7 C 0.121 3.879 8 C -0.103 4.103 9 Cl -0.055 7.055 10 C -0.045 4.045 11 C 0.132 3.868 12 N -0.682 5.682 13 C 0.693 3.307 14 O -0.583 6.583 15 N -0.714 5.714 16 C 0.280 3.720 17 H 0.051 0.949 18 C -0.148 4.148 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.410 0.590 37 H 0.388 0.612 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 5.530 -21.131 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 C -0.208 4.208 4 O -0.206 6.206 5 C 0.115 3.885 6 N -0.232 5.232 7 C -0.035 4.035 8 C -0.133 4.133 9 Cl -0.026 7.026 10 C -0.073 4.073 11 C 0.032 3.968 12 N -0.330 5.330 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.365 5.365 16 C 0.178 3.822 17 H 0.069 0.931 18 C -0.207 4.207 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.184 0.816 35 H 0.190 0.810 36 H 0.245 0.755 37 H 0.220 0.780 38 H 0.110 0.890 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.305 4.906 -21.291 21.888 hybrid contribution 0.921 0.667 1.280 1.712 sum -0.384 5.574 -20.011 20.776 Atomic orbital electron populations 1.22217 0.94854 1.03017 1.02571 1.22346 0.94463 0.92699 0.87796 1.21916 1.01975 0.93884 1.03058 1.86292 1.80324 1.15300 1.38675 1.19626 0.93880 0.85322 0.89673 1.67350 1.21412 1.11365 1.23058 1.22195 0.95825 0.87318 0.98190 1.21696 1.08451 0.86962 0.96154 1.98369 1.95663 1.11256 1.97356 1.21682 0.95653 0.92940 0.97039 1.17353 1.02639 0.91437 0.85360 1.42626 1.69139 1.18656 1.02620 1.16159 0.78918 0.85281 0.80276 1.90871 1.54065 1.15316 1.85856 1.45866 1.70067 1.15262 1.05284 1.18723 0.92872 0.93839 0.76723 0.93134 1.22104 0.97436 0.99182 1.01961 1.21196 1.27285 1.16235 0.92625 0.92028 1.24876 0.95365 0.94870 0.98536 1.69905 1.37879 1.23706 1.20471 0.86428 0.80185 0.79037 0.81320 1.20539 1.21041 1.19849 0.91886 0.91170 0.91917 0.89259 0.91798 0.90538 0.91492 0.81636 0.81031 0.75450 0.77985 0.89044 0.95481 0.96580 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.53 37.15 0.35 -1.20 16 2 C 0.08 0.81 3.11 -26.73 -0.08 0.72 16 3 C -0.15 -1.12 9.56 37.16 0.36 -0.76 16 4 O -0.30 -3.70 9.34 -19.02 -0.18 -3.88 16 5 C 0.30 4.07 7.48 -16.96 -0.13 3.95 16 6 N -0.51 -6.39 8.64 -13.15 -0.11 -6.51 16 7 C 0.12 1.40 10.97 -17.50 -0.19 1.21 16 8 C -0.10 -1.34 6.34 -39.38 -0.25 -1.59 16 9 Cl -0.05 -0.66 28.98 -51.86 -1.50 -2.17 16 10 C -0.04 -0.69 8.61 -39.10 -0.34 -1.03 16 11 C 0.13 2.02 6.35 -83.32 -0.53 1.49 16 12 N -0.68 -10.62 5.21 -14.00 -0.07 -10.69 16 13 C 0.69 13.77 8.39 -86.93 -0.73 13.04 16 14 O -0.58 -13.59 13.45 5.28 0.07 -13.52 16 15 N -0.71 -14.55 5.07 -59.81 -0.30 -14.86 16 16 C 0.28 7.01 2.56 -69.08 -0.18 6.83 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.67 9.26 37.15 0.34 -3.32 16 19 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 23 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.88 6.98 -51.93 -0.36 0.52 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.17 3.03 6.26 -52.48 -0.33 2.70 16 36 H 0.41 5.23 8.59 -40.82 -0.35 4.88 16 37 H 0.39 6.76 8.56 -40.82 -0.35 6.41 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -29.98 362.35 -8.24 -38.22 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.45 Total: 9.71 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -1.77 Total: 6.81 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.14 Total: -55.97 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.11 Total: -17.40 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.98 -8.24 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455847517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.762 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds