Wall clock time and date at job start Tue Mar 31 2020 15:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 O 1.42901 * 109.47504 * 119.99931 * 2 1 3 5 5 C 1.35769 * 116.99700 * 89.99989 * 4 2 1 6 6 N 1.32133 * 119.71405 * 0.27206 * 5 4 2 7 7 C 1.32005 * 121.73115 * 180.26727 * 6 5 4 8 8 C 1.38172 * 120.95293 * 359.74932 * 7 6 5 9 9 Cl 1.73602 * 120.34412 * 179.97438 * 8 7 6 10 10 C 1.38836 * 119.32215 * 359.97426 * 8 7 6 11 11 C 1.38943 * 118.41105 * 0.02562 * 10 8 7 12 12 N 1.40172 * 120.49535 * 179.97438 * 11 10 8 13 13 C 1.34769 * 120.00159 * 325.88275 * 12 11 10 14 14 O 1.21595 * 120.00053 * 4.21358 * 13 12 11 15 15 N 1.34775 * 119.99995 * 184.22055 * 13 12 11 16 16 C 1.46499 * 119.99934 * 179.97438 * 15 13 12 17 17 H 1.09007 * 109.47239 * 35.00332 * 16 15 13 18 18 C 1.52994 * 109.47570 * 275.00027 * 16 15 13 19 19 C 1.50704 * 109.47271 * 154.99754 * 16 15 13 20 20 H 1.08001 * 119.99787 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00520 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99414 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00163 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46796 * 90.00188 * 23 21 19 25 25 H 1.48499 * 109.46949 * 209.99800 * 23 21 19 26 26 H 1.48500 * 109.47261 * 329.99943 * 23 21 19 27 27 H 1.09003 * 109.47019 * 299.99337 * 1 2 3 28 28 H 1.08999 * 109.47672 * 59.99739 * 1 2 3 29 29 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47291 * 240.00652 * 2 1 3 31 31 H 1.09001 * 109.47475 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47012 * 300.00665 * 3 2 1 33 33 H 1.09002 * 109.47079 * 60.00218 * 3 2 1 34 34 H 1.08001 * 119.52696 * 179.72336 * 7 6 5 35 35 H 1.08003 * 120.79552 * 180.02562 * 10 8 7 36 36 H 0.97006 * 119.99527 * 145.87878 * 12 11 10 37 37 H 0.96996 * 120.00533 * 359.97438 * 15 13 12 38 38 H 1.08996 * 109.47590 * 180.02562 * 18 16 15 39 39 H 1.09006 * 109.46577 * 299.99827 * 18 16 15 40 40 H 1.08992 * 109.47378 * 59.99794 * 18 16 15 41 41 H 0.97007 * 119.99572 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0118 1.0651 6 7 1.9752 -2.6256 -0.0808 7 6 2.1563 -3.9255 -0.2225 8 6 2.6088 -4.6988 0.8293 9 17 2.8408 -6.4071 0.6256 10 6 2.8760 -4.0956 2.0510 11 6 2.6758 -2.7258 2.1697 12 7 2.9313 -2.0722 3.3831 13 6 2.7013 -2.7047 4.5507 14 8 2.3454 -3.8674 4.5525 15 7 2.8655 -2.0484 5.7164 16 6 2.6149 -2.7358 6.9856 17 1 2.9146 -3.7803 6.8985 18 6 1.1243 -2.6592 7.3215 19 6 3.4113 -2.0746 8.0809 20 1 4.0415 -1.2273 7.8541 21 6 3.3364 -2.5518 9.3722 22 7 2.5702 -3.5845 9.6480 23 14 4.3241 -1.7325 10.7296 24 1 3.5150 -0.6509 11.3467 25 1 4.6749 -2.7394 11.7632 26 1 5.5676 -1.1560 10.1581 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9474 -4.3913 -1.1742 35 1 3.2309 -4.6773 2.8889 36 1 3.2737 -1.1646 3.3824 37 1 3.1497 -1.1210 5.7151 38 1 0.9379 -3.1703 8.2661 39 1 0.8248 -1.6148 7.4087 40 1 0.5483 -3.1375 6.5295 41 1 2.5172 -3.9201 10.5567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455847517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:02 Heat of formation + Delta-G solvation = -61.421245 kcal Electronic energy + Delta-G solvation = -25500.835732 eV Core-core repulsion = 21634.364732 eV Total energy + Delta-G solvation = -3866.471000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27429 -40.88320 -39.36777 -37.58128 -37.09712 -35.99614 -34.43028 -34.11115 -32.69562 -31.13470 -29.82408 -28.13381 -27.33457 -25.62129 -24.50418 -23.11017 -22.21758 -21.65246 -20.10882 -19.59488 -18.96315 -18.01084 -17.69882 -17.04455 -16.90301 -16.50513 -16.18143 -15.90497 -15.54033 -15.16531 -15.08733 -14.82838 -14.40743 -14.27319 -13.92214 -13.74216 -13.46478 -13.22279 -13.05655 -13.00982 -12.93190 -12.72456 -12.63966 -12.38094 -12.28132 -12.13515 -12.01790 -11.83219 -11.63263 -11.44245 -11.10069 -10.82837 -10.61074 -10.28229 -9.83443 -9.02352 -8.17172 -6.34339 -0.18253 -0.04418 0.97647 1.45949 1.46901 1.56053 1.62121 1.85602 2.06742 2.42069 2.55302 3.13027 3.15403 3.32462 3.67999 3.80128 3.96022 3.98125 4.05866 4.29996 4.39165 4.72087 4.73264 4.82451 4.84064 4.88236 4.91835 4.93796 5.00404 5.09060 5.25097 5.29650 5.36426 5.44018 5.58613 5.61362 5.80755 6.08044 6.12799 6.16136 6.54143 6.72761 7.14119 7.33662 7.59408 8.89328 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.003308 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.599564 B = 8462.507267 C =10237.678480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.306 3.694 6 N -0.505 5.505 7 C 0.140 3.860 8 C -0.109 4.109 9 Cl -0.046 7.046 10 C -0.057 4.057 11 C 0.104 3.896 12 N -0.663 5.663 13 C 0.695 3.305 14 O -0.621 6.621 15 N -0.710 5.710 16 C 0.289 3.711 17 H 0.004 0.996 18 C -0.134 4.134 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.973 3.027 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.264 1.264 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.204 0.796 35 H 0.145 0.855 36 H 0.424 0.576 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.010 0.990 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 7.550 -22.906 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 C -0.203 4.203 4 O -0.213 6.213 5 C 0.124 3.876 6 N -0.229 5.229 7 C -0.016 4.016 8 C -0.138 4.138 9 Cl -0.018 7.018 10 C -0.085 4.085 11 C 0.005 3.995 12 N -0.313 5.313 13 C 0.395 3.605 14 O -0.502 6.502 15 N -0.362 5.362 16 C 0.185 3.815 17 H 0.022 0.978 18 C -0.193 4.193 19 C -0.585 4.585 20 H 0.093 0.907 21 C -0.184 4.184 22 N -0.555 5.555 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.188 1.188 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.220 0.780 35 H 0.162 0.838 36 H 0.262 0.738 37 H 0.239 0.761 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.965 6.991 -23.127 24.180 hybrid contribution 0.784 -0.002 1.665 1.840 sum -0.181 6.989 -21.462 22.572 Atomic orbital electron populations 1.22209 0.94445 1.02136 1.03556 1.22662 0.94846 0.93698 0.86817 1.21928 1.02034 0.92275 1.04091 1.86298 1.80115 1.14584 1.40299 1.19591 0.92880 0.85920 0.89238 1.67509 1.21357 1.11714 1.22276 1.22786 0.93209 0.86798 0.98847 1.21740 1.08757 0.87603 0.95748 1.98371 1.95633 1.10521 1.97248 1.21538 0.96444 0.93224 0.97326 1.17465 1.04801 0.91666 0.85549 1.42224 1.68556 1.18986 1.01577 1.16198 0.78456 0.84788 0.81029 1.90852 1.55635 1.17143 1.86590 1.45446 1.70602 1.15849 1.04318 1.18294 0.92792 0.91807 0.78587 0.97836 1.21922 0.97413 0.99471 1.00491 1.21520 1.27454 1.16521 0.92972 0.90728 1.25775 0.96301 0.95330 1.01026 1.70055 1.39301 1.25140 1.20980 0.85329 0.78929 0.77940 0.78031 1.19689 1.21304 1.18803 0.92413 0.88704 0.93668 0.89111 0.91724 0.88203 0.91739 0.77978 0.83766 0.73782 0.76071 0.91304 0.94172 0.97103 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.53 71.98 0.69 -2.02 16 2 C 0.08 1.30 3.11 30.59 0.10 1.39 16 3 C -0.15 -1.78 9.56 71.98 0.69 -1.10 16 4 O -0.31 -7.14 9.34 -90.97 -0.85 -7.99 16 5 C 0.31 8.03 7.48 84.95 0.64 8.67 16 6 N -0.50 -11.70 8.64 -308.39 -2.66 -14.36 16 7 C 0.14 2.94 10.97 84.65 0.93 3.86 16 8 C -0.11 -2.77 6.34 22.40 0.14 -2.62 16 9 Cl -0.05 -1.08 28.98 -2.72 -0.08 -1.16 16 10 C -0.06 -1.80 8.61 22.58 0.19 -1.61 16 11 C 0.10 3.19 6.35 38.27 0.24 3.43 16 12 N -0.66 -20.77 5.21 -316.48 -1.65 -22.42 16 13 C 0.69 28.32 8.39 179.06 1.50 29.82 16 14 O -0.62 -30.35 13.45 -4.02 -0.05 -30.41 16 15 N -0.71 -29.32 5.07 -461.41 -2.34 -31.66 16 16 C 0.29 14.85 2.56 44.24 0.11 14.97 16 17 H 0.00 0.23 7.58 -2.38 -0.02 0.21 16 18 C -0.13 -6.81 9.26 71.98 0.67 -6.15 16 19 C -0.55 -28.48 8.73 25.60 0.22 -28.25 16 20 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 21 C 0.02 0.84 5.30 84.65 0.45 1.29 16 22 N -0.92 -52.11 11.32 21.45 0.24 -51.86 16 23 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.55 6.98 -2.39 -0.02 1.54 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.14 5.41 6.26 -2.91 -0.02 5.39 16 36 H 0.42 10.55 8.59 -92.70 -0.80 9.76 16 37 H 0.40 13.86 8.56 -92.71 -0.79 13.06 16 38 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 39 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -66.30 362.35 0.69 -65.61 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.51 Total: 29.04 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 6.57 Total: 21.69 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -6.41 Total: -120.30 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.90 Total: -38.39 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -66.30 0.69 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455847517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.192 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds